mRNA_P-fluviatile_contig67.13258.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig67.13258.1
Unique NamemRNA_P-fluviatile_contig67.13258.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig67.13258.1 vs. uniprot
Match: A0A6H5JYB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.570e-14
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:  496 MMWQLAGCAMGTPTIYRLFKLTAVSDKGNRKKFSFGKASALADHILRTVTHFSTDE 663
            M+WQL+G AM TPT++RLFKLT VSDK ++KK  F + SALA+ ILR+V+HF+TDE
Sbjct:    1 MLWQLSGYAMSTPTMHRLFKLTTVSDKEDKKKILFVQTSALAEQILRSVSHFTTDE 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig67.13258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYB4_9PHAE1.570e-1464.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig67contigP-fluviatile_contig67:72996..76202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1664
Cds size918
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817079.2413445-UTR-P-fluviatile_contig67:72995..737381622817079.2413445-UTR-P-fluviatile_contig67:72995..73738Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 72996..73738 -
1693571049.2735207-UTR-P-fluviatile_contig67:72995..737381693571049.2735207-UTR-P-fluviatile_contig67:72995..73738Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 72996..73738 -
1622817079.3389149-UTR-P-fluviatile_contig67:76199..762021622817079.3389149-UTR-P-fluviatile_contig67:76199..76202Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 76200..76202 -
1693571049.352779-UTR-P-fluviatile_contig67:76199..762021693571049.352779-UTR-P-fluviatile_contig67:76199..76202Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 76200..76202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817079.2515607-CDS-P-fluviatile_contig67:73738..738581622817079.2515607-CDS-P-fluviatile_contig67:73738..73858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 73739..73858 -
1693571049.28514-CDS-P-fluviatile_contig67:73738..738581693571049.28514-CDS-P-fluviatile_contig67:73738..73858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 73739..73858 -
1622817079.2611048-CDS-P-fluviatile_contig67:74034..741001622817079.2611048-CDS-P-fluviatile_contig67:74034..74100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 74035..74100 -
1693571049.2934482-CDS-P-fluviatile_contig67:74034..741001693571049.2934482-CDS-P-fluviatile_contig67:74034..74100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 74035..74100 -
1622817079.2712004-CDS-P-fluviatile_contig67:74375..744471622817079.2712004-CDS-P-fluviatile_contig67:74375..74447Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 74376..74447 -
1693571049.305771-CDS-P-fluviatile_contig67:74375..744471693571049.305771-CDS-P-fluviatile_contig67:74375..74447Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 74376..74447 -
1622817079.2818868-CDS-P-fluviatile_contig67:74580..747581622817079.2818868-CDS-P-fluviatile_contig67:74580..74758Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 74581..74758 -
1693571049.3147671-CDS-P-fluviatile_contig67:74580..747581693571049.3147671-CDS-P-fluviatile_contig67:74580..74758Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 74581..74758 -
1622817079.2966495-CDS-P-fluviatile_contig67:75052..751921622817079.2966495-CDS-P-fluviatile_contig67:75052..75192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 75053..75192 -
1693571049.323622-CDS-P-fluviatile_contig67:75052..751921693571049.323622-CDS-P-fluviatile_contig67:75052..75192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 75053..75192 -
1622817079.3108208-CDS-P-fluviatile_contig67:75378..755701622817079.3108208-CDS-P-fluviatile_contig67:75378..75570Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 75379..75570 -
1693571049.333247-CDS-P-fluviatile_contig67:75378..755701693571049.333247-CDS-P-fluviatile_contig67:75378..75570Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 75379..75570 -
1622817079.323215-CDS-P-fluviatile_contig67:76049..761991622817079.323215-CDS-P-fluviatile_contig67:76049..76199Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 76050..76199 -
1693571049.3445904-CDS-P-fluviatile_contig67:76049..761991693571049.3445904-CDS-P-fluviatile_contig67:76049..76199Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 76050..76199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig67.13258.1prot_P-fluviatile_contig67.13258.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig67 73739..76199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig67.13258.1

>prot_P-fluviatile_contig67.13258.1 ID=prot_P-fluviatile_contig67.13258.1|Name=mRNA_P-fluviatile_contig67.13258.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=306bp
MDLYTSIMMHIFGNRAHQMNARLVRGDRNAFVPWEMVAPAVEALLPVMDE
SEHFQHRSHALMWSVDQPDNMWALSEARKMDLTRSISELARPAGQTYLGS
STYSDIYKTDTILQVVDVDVAMEYILNAWFEQRNENKRQLAKTIEMHRAI
EHGSQLMGFARFSEMMWQLAGCAMGTPTIYRLFKLTAVSDKGNRKKFSFG
KASALADHILRTVTHFSTDEHRAKEILNEGDNRHLQEKAQQSWQDMCTNT
TSKSRGERLRLYIVLQARMRGWKTRWRHQMSTRIQSLGRGYMVRRRRANN
WGRRF*
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mRNA from alignment at P-fluviatile_contig67:72996..76202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig67.13258.1 ID=mRNA_P-fluviatile_contig67.13258.1|Name=mRNA_P-fluviatile_contig67.13258.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3207bp|location=Sequence derived from alignment at P-fluviatile_contig67:72996..76202- (Porterinema fluviatile SAG_2381)
GCAATGGATCTGTACACATCAATCATGATGCACATTTTCGGCAACCGGGC
GCATCAAATGAATGCCCGGCTGGTGAGAGGAGATAGGAATGCCTTCGTTC
CATGGGAAATGGTCGCTCCAGCGGTGGAGGCACTACTCCCGGTGATGGAC
GAGGTCCGGTGCTTCGGTGATAGGCCAAACAGTGATATGGAACGATATTG
TTTTGGAGGGCCCGGTTTACTTGGTGGTTTCGTTGTGTTTTTATTGTTGC
CGTTACCTTCACCTGACCACACGAACCGTTGTGGTCCTTTATTTTCCCCT
CTAGATCTGCCCTTATCTGTGCCATAAGAGCCGACTTCCATCGTGAAAGG
TTGAATTTCAAGGAGAATCACATCTGATGAGATGGAATGGACGCAGAAAG
ATGGGACACACGAAAAGTTATACGCTTTGTCGTCGTGAAATTTGCGGCTC
ACTTGTTCGGCAATGAACGCACATATCTCCCTTCCTCGTGGGGGAAGTCG
GGCTGCCTCCTGGTGTTTAAACTGTTCGTTACATGCCATTCACTCAAACA
GCAGGCTTGGGCTTTCGTGATTTTTTTCTTGACTTGCTTCAGCCCGTTCG
GCGCCTGTCCCATTTGTTTGTGTTTGACGTAGAGCGAACACTTCCAACAT
CGCAGCCATGCCCTCATGTGGTCGGTTGACCAACCGGACAACATGTGGGC
CTTAAGTGAAGCGCGCAAAATGGATCTCACGCGGTCCATTTCGGAGCTTG
CAAGGCCCGCTGGGCAAACGTATCTCGGCTCGTCTACGTATTCTGATATC
TACAAGACAGACACAATTTTGCAGGTGATGTTAACGCTAGGACAACAACC
CATTCTCTTAGAGTGACGAATGTATTGGCGTCCATTGTTGATACCCATAT
TGGTTCGTCCTTGCAATTGAGGATTCACTGAGCCCCCAGTCATTCCCGAG
GGGAGCTAATGTGGACCAAAAGTGAAGGTCATCATCCTGCTGTTTGTCCC
TTTCGACCAGGTGGTGGACGTTGACGTTGCAATGGAATACATTCTGAACG
CGTGGTTCGAGCAGCGGAACGAAAATAAGAGGCAGCTGGCCAAGACCATC
GAGATGCACCGTGCGATCGAACATGGAAGCCAACTCATGGGCTTTGCAAG
GTTAATGCCACTTTTGAGTAAAATGCCGATCATGAGCCTGCAAACTACCC
GAAATCGACGGACATTGTCGTGTGCGCATTGTCCTCGCACGCGCAAGTCG
TTTCCGACCACCTGTGACCCCCCGCCCCCTTTGGTTGTGCTTGAATCAAG
GCCCCGAGGGATACATGCCTGTTGGAATGCCAGGATCGGCGTAAGAATCG
GATGGTTTCTCCCAATCCACTTAGAGAGTGAACGAAAGTGGCCCCATCCC
GACACCCCCCCCCCCCACGCTGCCTGTCCATGCCTCTTTTCCAGATTCAG
CGAGATGATGTGGCAATTGGCAGGATGTGCCATGGGCACCCCAACCATTT
ACCGGCTGTTCAAGCTGACGGCCGTTTCGGACAAGGGAAATAGGAAGAAG
TTCTCGTTCGGGAAGGCATCCGCGCTGGCGGACCATATTCTCCGTACTGT
TACGCATTTCAGCACCGACGAGGTAAGGTTTTTCCCATTCAAGGAAAAAT
GCGTAGTGGCTTTGCTTCAACGGAAATCCCTTCTACCATCGTGTATAAAT
GAGCCTTTGCTCTCCGATTCCGCACTGACCGCCGATCGCTGATCTGTTGC
GTCAGCATCGAGCCAAGGAAATATTGAACGAAGGCGATAACCGCCATCTG
CAAGAAAAAGCACAACAGAGTTGGCAGGTTAGTACACGCGTACCATTTTA
TGTACGGCAGCCTGCAATAATAGGTGGTACCATTCTCCTGCACTCATTGT
GCAAGCTTGAAGTGGGCAAATAAAGTGTCTCACAGTATCTTCCATGTTCT
GCCAAACTATATCCCGATCTAATGCTTGGAACTTTGGATAGAACGCTCGT
GCGTGGCGTGTGAGGGCATAGTCGGGCGTTGCCGCTGTCTCTCAATCGTT
CGAACACCGAAGGTTCGTTCCATATAAAACACCTGTCATATGGCGCACAC
AGGATATGTGCACGAATACCACCAGCAAGAGCCGCGGGGAAAGGCTTCGC
TTGTACATCGTACTCCAGGTACAAAAACAACAGCCTTCGTCTCAATCCAC
GCACAAGCCGGATTTGCACGTCTTTCATTTTTTCCAGAAATTTCGGGCAA
GATGCAGCTATGCAAAGTATTGTGCGAGGCTTGTCAAGCGCTCCCACAGT
AAGTTCCGCCGGGTCTCCTTTGCCTTCTTCTGTTCTCTGGCCAGGCGCGC
ATGCGTGGATGGAAGACTCGATGGAGGCACCAAATGTCTACCCGTATCCA
GAGTCTCGGTCGAGGATACATGGTGCGACGTCGTCGCGCAAACAATTGGG
GTCGTCGATTTTGAAAATGGTTGAAGACACTCATGCTTGCTACCCCCGGC
TGGCCCATATTACTGTCATGAACTTTCGGTTGATTCCCTTGTCCACAATA
ATTGGTCACGTTTATTGGAAGCTCGGGTGTTCCTTTTCTTCAGAAGCCTG
CATGGATGCCGTCAGGTTTACTATGCTACAGATGTCAATAAACTTTCTTG
GCCGGTTCGTTGTTGAAGTTTAAGCTGAAGCAGGGTCAGGGCGAGGATAA
TGCATCGGGAAAACAAAAACCGGGCGAAGTAAAAGAGTTTTGCCGAGAAT
TCAGCCATTTTTTTCCCAAGACCCACGCAAACTTCACCCGTAGTACGTCG
AGTGACGGTTTTGCGTATAAATCTGGCAGGAATGGTACATACGCGGGTCA
TGTTGTGTGTTGGGTGGATGGGGGGCAAGGTCTCGTCTTGACACCGAAAT
CGAGATTTTCTGCGATCAAGGCGCTCTGTGATAGATCGAATCGGAGGTCA
GAACGAATAGCTAGATAGTCTAGGAACAATCTTACAGAGTCAGCCGCGGG
CGTTTCATGAAGCTCTCGGCTCGGTATTGCTGCGTCATGAATCGATTTTC
CGCGATGCGACCACTCTTCCGAATGTAAATGTATAATTTCCATTCCAAAA
AGCGAGCGAAGGGATATTTGCGATCAGTGCATTCTTCTTTTGGAGTATAC
CGCAGGTTGATAAGCTGAAACGCGGTTTCCGCTAATTCGATCAATAGCTC
AACGCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig67:72996..76202-

>mRNA_P-fluviatile_contig67.13258.1 ID=mRNA_P-fluviatile_contig67.13258.1|Name=mRNA_P-fluviatile_contig67.13258.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1836bp|location=Sequence derived from alignment at P-fluviatile_contig67:72996..76202- (Porterinema fluviatile SAG_2381)
ATGGATCTGTACACATCAATCATGATGCACATTTTCGGCAACCGGGCGCA
TCAAATGAATGCCCGGCTGGTGAGAGGAGATAGGAATGCCTTCGTTCCAT
GGGAAATGGTCGCTCCAGCGGTGGAGGCACTACTCCCGGTGATGGACGAG
ATGGATCTGTACACATCAATCATGATGCACATTTTCGGCAACCGGGCGCA
TCAAATGAATGCCCGGCTGGTGAGAGGAGATAGGAATGCCTTCGTTCCAT
GGGAAATGGTCGCTCCAGCGGTGGAGGCACTACTCCCGGTGATGGACGAG
AGCGAACACTTCCAACATCGCAGCCATGCCCTCATGTGGTCGGTTGACCA
ACCGGACAACATGTGGGCCTTAAGTGAAGCGCGCAAAATGGATCTCACGC
GGTCCATTTCGGAGCTTGCAAGGCCCGCTGGGCAAACGTATCTCGGCTCG
TCTACGTATTCTGATATCTACAAGACAGACACAATTTTGCAGAGCGAACA
CTTCCAACATCGCAGCCATGCCCTCATGTGGTCGGTTGACCAACCGGACA
ACATGTGGGCCTTAAGTGAAGCGCGCAAAATGGATCTCACGCGGTCCATT
TCGGAGCTTGCAAGGCCCGCTGGGCAAACGTATCTCGGCTCGTCTACGTA
TTCTGATATCTACAAGACAGACACAATTTTGCAGGTGGTGGACGTTGACG
TTGCAATGGAATACATTCTGAACGCGTGGTTCGAGCAGCGGAACGAAAAT
AAGAGGCAGCTGGCCAAGACCATCGAGATGCACCGTGCGATCGAACATGG
AAGCCAACTCATGGGCTTTGCAAGGTGGTGGACGTTGACGTTGCAATGGA
ATACATTCTGAACGCGTGGTTCGAGCAGCGGAACGAAAATAAGAGGCAGC
TGGCCAAGACCATCGAGATGCACCGTGCGATCGAACATGGAAGCCAACTC
ATGGGCTTTGCAAGATTCAGCGAGATGATGTGGCAATTGGCAGGATGTGC
CATGGGCACCCCAACCATTTACCGGCTGTTCAAGCTGACGGCCGTTTCGG
ACAAGGGAAATAGGAAGAAGTTCTCGTTCGGGAAGGCATCCGCGCTGGCG
GACCATATTCTCCGTACTGTTACGCATTTCAGCACCGACGAGATTCAGCG
AGATGATGTGGCAATTGGCAGGATGTGCCATGGGCACCCCAACCATTTAC
CGGCTGTTCAAGCTGACGGCCGTTTCGGACAAGGGAAATAGGAAGAAGTT
CTCGTTCGGGAAGGCATCCGCGCTGGCGGACCATATTCTCCGTACTGTTA
CGCATTTCAGCACCGACGAGCATCGAGCCAAGGAAATATTGAACGAAGGC
GATAACCGCCATCTGCAAGAAAAAGCACAACAGAGTTGGCAGCATCGAGC
CAAGGAAATATTGAACGAAGGCGATAACCGCCATCTGCAAGAAAAAGCAC
AACAGAGTTGGCAGGATATGTGCACGAATACCACCAGCAAGAGCCGCGGG
GAAAGGCTTCGCTTGTACATCGTACTCCAGGATATGTGCACGAATACCAC
CAGCAAGAGCCGCGGGGAAAGGCTTCGCTTGTACATCGTACTCCAGGCGC
GCATGCGTGGATGGAAGACTCGATGGAGGCACCAAATGTCTACCCGTATC
CAGAGTCTCGGTCGAGGATACATGGTGCGACGTCGTCGCGCAAACAATTG
GGGTCGTCGATTTTGAGCGCGCATGCGTGGATGGAAGACTCGATGGAGGC
ACCAAATGTCTACCCGTATCCAGAGTCTCGGTCGAGGATACATGGTGCGA
CGTCGTCGCGCAAACAATTGGGGTCGTCGATTTTGA
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