mRNA_P-fluviatile_contig66.13252.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig66.13252.1
Unique NamemRNA_P-fluviatile_contig66.13252.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig66.13252.1 vs. uniprot
Match: A0A6H5JDC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.790e-10
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 ARDNKEEPEPWIMRLVLGAPVQDVTLTQLK 90
            ARDNKEEPEPWIMRLVLGAPVQD TLTQ+K
Sbjct:  170 ARDNKEEPEPWIMRLVLGAPVQDATLTQVK 199
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BLAST of mRNA_P-fluviatile_contig66.13252.1 vs. uniprot
Match: A0A6H5KID2_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KID2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.680e-9
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 ARDNKEEPEPWIMRLVLGAPVQDVTLTQL 87
            ARDNKEEPEPWIMRLVLGAPVQD TLTQ+
Sbjct:  172 ARDNKEEPEPWIMRLVLGAPVQDATLTQV 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig66.13252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDC7_9PHAE2.790e-1093.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KID2_9PHAE3.680e-993.10Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig66contigP-fluviatile_contig66:837085..838206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817070.131351-CDS-P-fluviatile_contig66:837084..8371651622817070.131351-CDS-P-fluviatile_contig66:837084..837165Porterinema fluviatile SAG_2381CDSP-fluviatile_contig66 837085..837165 -
1693571029.8295274-CDS-P-fluviatile_contig66:837084..8371651693571029.8295274-CDS-P-fluviatile_contig66:837084..837165Porterinema fluviatile SAG_2381CDSP-fluviatile_contig66 837085..837165 -
1622817070.1416876-CDS-P-fluviatile_contig66:838122..8382061622817070.1416876-CDS-P-fluviatile_contig66:838122..838206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig66 838123..838206 -
1693571029.8426998-CDS-P-fluviatile_contig66:838122..8382061693571029.8426998-CDS-P-fluviatile_contig66:838122..838206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig66 838123..838206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig66.13252.1prot_P-fluviatile_contig66.13252.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig66 837085..838206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig66.13252.1

>prot_P-fluviatile_contig66.13252.1 ID=prot_P-fluviatile_contig66.13252.1|Name=mRNA_P-fluviatile_contig66.13252.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
ARDNKEEPEPWIMRLVLGAPVQDVTLTQLKLHTGELENRINQLEKLVNTQ
GDTHV
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mRNA from alignment at P-fluviatile_contig66:837085..838206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig66.13252.1 ID=mRNA_P-fluviatile_contig66.13252.1|Name=mRNA_P-fluviatile_contig66.13252.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1122bp|location=Sequence derived from alignment at P-fluviatile_contig66:837085..838206- (Porterinema fluviatile SAG_2381)
GCGCGTGACAACAAGGAGGAACCGGAACCTTGGATCATGCGCCTAGTCCT
AGGAGCTCCCGTGCAAGACGTGACACTCACTCAGGTGAAACCACGCCGAT
TGGAATCTGATTTTTCTGCTTCTCGTTCCGATGACACCCCTATCGTTCAG
CAAGTTGTACAACCCCAGCCGCAGCAGCAGGCAGCATCCCCGCACCAGCA
AAGCGGAGCCGGGTCACAACCGCAGCCGAATGTAGCACCTCTACCCCAGC
ACAGTGGAGACGTGTCACAACAGCAGCAGCAGAACAATCTAGCCATTCCC
ACACACGAGCAACGCACTCGCGCAACTCAAGACACTTTCAGAGCTCTCAA
GGCTTCCGAGTTTCCGCCAACTCTGAAACTTGAGGGTCTCCCATCGGAAG
ATGTACCCGAGATCATGGCACAGTACCGCACGCACATTCGCCTCTCGCTG
CCCGAAAACACCTCGGACGACATCATCGACCGTAGAGCTATTAAGAACTT
ACGCCTCATCACGAAAGGCGCCGCTGCGCAATCGCTTGACCTCATTCTGA
GTTCTCACTTGGAGTGGCGGTCGGAACAGCAGGTAGCCGCAATTCGTGCA
CGGGGTGAACAAGTTACCATCTCTCCTCCTCAAACCTGGAAACAATGGGT
TAACGCTATGACTACTCTCTTCGCACCCGCTAACAGAATCGCACTTCTCG
CACGCGAAGCCATGACTCTCCAAGCGAAACCTAACGAGTCTGTCGACCTG
TTTTCTATTCGAGTCTCACGCGCATACTCTAGACTTCTCGCCGAAGCCGA
ACGGACTGCACCACCGAATATGTCTGCACACGAACACGCATTTGAGAAAG
CACTCATTGCATCGTTTGAGAACGGTTTGCCGCCGGATATCAGGGTAGAG
ATGATTCGAGAAGACGCACCGCAAACGTTTATGACTTCCAAAACGCGCGC
CCGCAAACACGAAGCGAACAAACTGCGCTCTGCAACGTCTCAATCAGCCG
CCTCGATATCTTCCCTCCTCGATTCCACACTACAACCGCAGCTAAAACTT
CACACGGGTGAACTCGAGAATCGGATCAACCAGCTCGAGAAACTTGTCAA
CACGCAAGGAGACACCCACGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig66:837085..838206-

>mRNA_P-fluviatile_contig66.13252.1 ID=mRNA_P-fluviatile_contig66.13252.1|Name=mRNA_P-fluviatile_contig66.13252.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig66:837085..838206- (Porterinema fluviatile SAG_2381)
GCGCGTGACAACAAGGAGGAACCGGAACCTTGGATCATGCGCCTAGTCCT
AGGAGCTCCCGTGCAAGACGTGACACTCACTCAGGCGCGTGACAACAAGG
AGGAACCGGAACCTTGGATCATGCGCCTAGTCCTAGGAGCTCCCGTGCAA
GACGTGACACTCACTCAGCTAAAACTTCACACGGGTGAACTCGAGAATCG
GATCAACCAGCTCGAGAAACTTGTCAACACGCAAGGAGACACCCACGTCC
TAAAACTTCACACGGGTGAACTCGAGAATCGGATCAACCAGCTCGAGAAA
CTTGTCAACACGCAAGGAGACACCCACGTC
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