mRNA_P-fluviatile_contig66.13203.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig66.13203.1
Unique NamemRNA_P-fluviatile_contig66.13203.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig66.13203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig66contigP-fluviatile_contig66:377914..378344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817070.3892894-CDS-P-fluviatile_contig66:377913..3782671622817070.3892894-CDS-P-fluviatile_contig66:377913..378267Porterinema fluviatile SAG_2381CDSP-fluviatile_contig66 377914..378267 +
1693571030.1757736-CDS-P-fluviatile_contig66:377913..3782671693571030.1757736-CDS-P-fluviatile_contig66:377913..378267Porterinema fluviatile SAG_2381CDSP-fluviatile_contig66 377914..378267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817070.408172-UTR-P-fluviatile_contig66:378267..3783441622817070.408172-UTR-P-fluviatile_contig66:378267..378344Porterinema fluviatile SAG_2381UTRP-fluviatile_contig66 378268..378344 +
1693571030.183625-UTR-P-fluviatile_contig66:378267..3783441693571030.183625-UTR-P-fluviatile_contig66:378267..378344Porterinema fluviatile SAG_2381UTRP-fluviatile_contig66 378268..378344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig66.13203.1prot_P-fluviatile_contig66.13203.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig66 377914..378267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig66.13203.1

>prot_P-fluviatile_contig66.13203.1 ID=prot_P-fluviatile_contig66.13203.1|Name=mRNA_P-fluviatile_contig66.13203.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=118bp
GGCCCCGSCCADLLQRSVRTGGRRSALSCTAAQAARQAQRPSHLNAKYDA
KKLRACHLLSDLWGQLGRQELVSSAATRGGGCADITFPPQRECEPKLIHH
RHSSRCVGSVEADRTRC*
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mRNA from alignment at P-fluviatile_contig66:377914..378344+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig66.13203.1 ID=mRNA_P-fluviatile_contig66.13203.1|Name=mRNA_P-fluviatile_contig66.13203.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=431bp|location=Sequence derived from alignment at P-fluviatile_contig66:377914..378344+ (Porterinema fluviatile SAG_2381)
GGCGGCTGCTGCTGCTGTGGTAGTTGCTGCGCCGACCTGCTTCAAAGATC
GGTCCGAACGGGGGGGCGGCGCTCAGCGTTGTCGTGCACGGCGGCCCAAG
CAGCCAGACAAGCTCAGAGACCTTCACATCTGAACGCAAAATATGATGCG
AAAAAGCTCAGAGCTTGCCACTTGCTTAGCGACCTATGGGGCCAGTTGGG
CAGGCAGGAGCTCGTGTCTTCTGCAGCCACACGAGGGGGGGGATGTGCCG
ATATTACGTTTCCTCCACAAAGAGAGTGCGAACCAAAGCTAATCCATCAC
CGTCACAGCTCGAGATGCGTGGGCTCGGTCGAAGCTGATCGCACTAGATG
CTGAGCGGAGGACGAATGGTGCCCTTTTCTTTCGAATCAGAGGTAATCTG
TCGGCGGCATTGTCGGCCAGCAGGATAACGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig66:377914..378344+

>mRNA_P-fluviatile_contig66.13203.1 ID=mRNA_P-fluviatile_contig66.13203.1|Name=mRNA_P-fluviatile_contig66.13203.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=708bp|location=Sequence derived from alignment at P-fluviatile_contig66:377914..378344+ (Porterinema fluviatile SAG_2381)
GGCGGCTGCTGCTGCTGTGGTAGTTGCTGCGCCGACCTGCTTCAAAGATC
GGTCCGAACGGGGGGGCGGCGCTCAGCGTTGTCGTGCACGGCGGCCCAAG
CAGCCAGACAAGCTCAGAGACCTTCACATCTGAACGCAAAATATGATGCG
AAAAAGCTCAGAGCTTGCCACTTGCTTAGCGACCTATGGGGCCAGTTGGG
CAGGCAGGAGCTCGTGTCTTCTGCAGCCACACGAGGGGGGGGATGTGCCG
ATATTACGTTTCCTCCACAAAGAGAGTGCGAACCAAAGCTAATCCATCAC
CGTCACAGCTCGAGATGCGTGGGCTCGGTCGAAGCTGATCGCACTAGATG
CTGAGGCGGCTGCTGCTGCTGTGGTAGTTGCTGCGCCGACCTGCTTCAAA
GATCGGTCCGAACGGGGGGGCGGCGCTCAGCGTTGTCGTGCACGGCGGCC
CAAGCAGCCAGACAAGCTCAGAGACCTTCACATCTGAACGCAAAATATGA
TGCGAAAAAGCTCAGAGCTTGCCACTTGCTTAGCGACCTATGGGGCCAGT
TGGGCAGGCAGGAGCTCGTGTCTTCTGCAGCCACACGAGGGGGGGGATGT
GCCGATATTACGTTTCCTCCACAAAGAGAGTGCGAACCAAAGCTAATCCA
TCACCGTCACAGCTCGAGATGCGTGGGCTCGGTCGAAGCTGATCGCACTA
GATGCTGA
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