mRNA_P-fluviatile_contig65.13152.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig65.13152.1
Unique NamemRNA_P-fluviatile_contig65.13152.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig65.13152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig65contigP-fluviatile_contig65:542772..543110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817061.6672978-UTR-P-fluviatile_contig65:542771..5428041622817061.6672978-UTR-P-fluviatile_contig65:542771..542804Porterinema fluviatile SAG_2381UTRP-fluviatile_contig65 542772..542804 +
1693570983.8363512-UTR-P-fluviatile_contig65:542771..5428041693570983.8363512-UTR-P-fluviatile_contig65:542771..542804Porterinema fluviatile SAG_2381UTRP-fluviatile_contig65 542772..542804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817061.6769855-CDS-P-fluviatile_contig65:542804..5431101622817061.6769855-CDS-P-fluviatile_contig65:542804..543110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 542805..543110 +
1693570983.8448198-CDS-P-fluviatile_contig65:542804..5431101693570983.8448198-CDS-P-fluviatile_contig65:542804..543110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 542805..543110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig65.13152.1prot_P-fluviatile_contig65.13152.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig65 542805..543110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig65.13152.1

>prot_P-fluviatile_contig65.13152.1 ID=prot_P-fluviatile_contig65.13152.1|Name=mRNA_P-fluviatile_contig65.13152.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MQTWRGRKYKAATPKAATVTNALIEETQEYACGRCRLRAIYCPTFPGHHF
LSFSTTTKTRTRSHLRGCDNNVGDRRIITAATPAHGCTYQGIRKTASVCS
HG
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mRNA from alignment at P-fluviatile_contig65:542772..543110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig65.13152.1 ID=mRNA_P-fluviatile_contig65.13152.1|Name=mRNA_P-fluviatile_contig65.13152.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=339bp|location=Sequence derived from alignment at P-fluviatile_contig65:542772..543110+ (Porterinema fluviatile SAG_2381)
CTGTAAGCCACAACACAACCTTGGAGCAACTTAATGCAAACTTGGAGGGG
GAGGAAGTACAAAGCTGCTACACCAAAAGCTGCCACAGTGACCAACGCAT
TGATCGAAGAGACGCAGGAGTATGCGTGTGGTCGATGTCGCCTTCGCGCC
ATCTACTGCCCCACCTTTCCGGGTCATCATTTCTTGAGTTTCTCCACCAC
GACGAAGACAAGAACAAGGAGCCACTTGCGAGGATGTGACAACAACGTCG
GAGACAGAAGGATCATCACAGCTGCTACACCGGCACACGGATGCACGTAC
CAGGGAATCCGAAAGACGGCCTCCGTTTGCAGCCACGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig65:542772..543110+

>mRNA_P-fluviatile_contig65.13152.1 ID=mRNA_P-fluviatile_contig65.13152.1|Name=mRNA_P-fluviatile_contig65.13152.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig65:542772..543110+ (Porterinema fluviatile SAG_2381)
ATGCAAACTTGGAGGGGGAGGAAGTACAAAGCTGCTACACCAAAAGCTGC
CACAGTGACCAACGCATTGATCGAAGAGACGCAGGAGTATGCGTGTGGTC
GATGTCGCCTTCGCGCCATCTACTGCCCCACCTTTCCGGGTCATCATTTC
TTGAGTTTCTCCACCACGACGAAGACAAGAACAAGGAGCCACTTGCGAGG
ATGTGACAACAACGTCGGAGACAGAAGGATCATCACAGCTGCTACACCGG
CACACGGATGCACGTACCAGGGAATCCGAAAGACGGCCTCCGTTTGCAGC
CACGGCATGCAAACTTGGAGGGGGAGGAAGTACAAAGCTGCTACACCAAA
AGCTGCCACAGTGACCAACGCATTGATCGAAGAGACGCAGGAGTATGCGT
GTGGTCGATGTCGCCTTCGCGCCATCTACTGCCCCACCTTTCCGGGTCAT
CATTTCTTGAGTTTCTCCACCACGACGAAGACAAGAACAAGGAGCCACTT
GCGAGGATGTGACAACAACGTCGGAGACAGAAGGATCATCACAGCTGCTA
CACCGGCACACGGATGCACGTACCAGGGAATCCGAAAGACGGCCTCCGTT
TGCAGCCACGGC
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