mRNA_P-fluviatile_contig65.13132.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig65.13132.1
Unique NamemRNA_P-fluviatile_contig65.13132.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig65.13132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig65contigP-fluviatile_contig65:278837..279218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig65.13132.1prot_P-fluviatile_contig65.13132.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig65 278881..279189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817061.5556238-UTR-P-fluviatile_contig65:278836..2788801622817061.5556238-UTR-P-fluviatile_contig65:278836..278880Porterinema fluviatile SAG_2381UTRP-fluviatile_contig65 278837..278880 +
1693570983.780986-UTR-P-fluviatile_contig65:278836..2788801693570983.780986-UTR-P-fluviatile_contig65:278836..278880Porterinema fluviatile SAG_2381UTRP-fluviatile_contig65 278837..278880 +
1622817061.5753539-UTR-P-fluviatile_contig65:279189..2792181622817061.5753539-UTR-P-fluviatile_contig65:279189..279218Porterinema fluviatile SAG_2381UTRP-fluviatile_contig65 279190..279218 +
1693570983.8008642-UTR-P-fluviatile_contig65:279189..2792181693570983.8008642-UTR-P-fluviatile_contig65:279189..279218Porterinema fluviatile SAG_2381UTRP-fluviatile_contig65 279190..279218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817061.5656025-CDS-P-fluviatile_contig65:278880..2791891622817061.5656025-CDS-P-fluviatile_contig65:278880..279189Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 278881..279189 +
1693570983.7899919-CDS-P-fluviatile_contig65:278880..2791891693570983.7899919-CDS-P-fluviatile_contig65:278880..279189Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 278881..279189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig65.13132.1

>prot_P-fluviatile_contig65.13132.1 ID=prot_P-fluviatile_contig65.13132.1|Name=mRNA_P-fluviatile_contig65.13132.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
MCVRQTKSTMPRTRAKTPHGPIVRVCFLRASSGRRTTKKGGIKQRKTREG
ARAIQQKTRTVSQGIQSRTDPRENGTITQTPTNREKTPCPNQYQPTTHRQ
VD*
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mRNA from alignment at P-fluviatile_contig65:278837..279218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig65.13132.1 ID=mRNA_P-fluviatile_contig65.13132.1|Name=mRNA_P-fluviatile_contig65.13132.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=382bp|location=Sequence derived from alignment at P-fluviatile_contig65:278837..279218+ (Porterinema fluviatile SAG_2381)
GGCATGTACATTGAATTTCGTACCGGCAGCAGCGGGGGAAACGCATGTGC
GTTCGGCAGACAAAGTCCACGATGCCACGGACACGAGCTAAAACACCACA
TGGACCGATCGTCAGGGTATGCTTTCTCCGGGCTTCATCAGGGCGTCGAA
CAACGAAAAAGGGGGGCATCAAGCAACGGAAAACGAGGGAGGGCGCGAGA
GCTATACAACAAAAAACTCGTACCGTAAGTCAGGGAATACAGTCAAGGAC
AGACCCCAGAGAGAACGGAACCATCACACAAACTCCAACCAACAGAGAAA
AAACGCCTTGTCCAAATCAGTATCAACCGACGACCCATCGACAAGTGGAC
TGACCTGGGTGAGGAACCCGACGACGGCGAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig65:278837..279218+

>mRNA_P-fluviatile_contig65.13132.1 ID=mRNA_P-fluviatile_contig65.13132.1|Name=mRNA_P-fluviatile_contig65.13132.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig65:278837..279218+ (Porterinema fluviatile SAG_2381)
ATGTGCGTTCGGCAGACAAAGTCCACGATGCCACGGACACGAGCTAAAAC
ACCACATGGACCGATCGTCAGGGTATGCTTTCTCCGGGCTTCATCAGGGC
GTCGAACAACGAAAAAGGGGGGCATCAAGCAACGGAAAACGAGGGAGGGC
GCGAGAGCTATACAACAAAAAACTCGTACCGTAAGTCAGGGAATACAGTC
AAGGACAGACCCCAGAGAGAACGGAACCATCACACAAACTCCAACCAACA
GAGAAAAAACGCCTTGTCCAAATCAGTATCAACCGACGACCCATCGACAA
GTGGACTGAATGTGCGTTCGGCAGACAAAGTCCACGATGCCACGGACACG
AGCTAAAACACCACATGGACCGATCGTCAGGGTATGCTTTCTCCGGGCTT
CATCAGGGCGTCGAACAACGAAAAAGGGGGGCATCAAGCAACGGAAAACG
AGGGAGGGCGCGAGAGCTATACAACAAAAAACTCGTACCGTAAGTCAGGG
AATACAGTCAAGGACAGACCCCAGAGAGAACGGAACCATCACACAAACTC
CAACCAACAGAGAAAAAACGCCTTGTCCAAATCAGTATCAACCGACGACC
CATCGACAAGTGGACTGA
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