mRNA_P-fluviatile_contig65.13131.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig65.13131.1
Unique NamemRNA_P-fluviatile_contig65.13131.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: D7G8V9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 7.700e-52
Identity = 93/113 (82.30%), Postives = 99/113 (87.61%), Query Frame = 1
Query:    1 SASAFVPTTSFAGSRVVAPVHASSPSSAALSMAASDMVGASAPLGFFDPMGFSKGPAERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            SASAFVP+ SF GS V +    +S  S A+SMAASDMVGASAPLGFFDPMGFSKGPAERL AYRE+ELKHGRTAMLAVVGFLTQENWHPLYNG LSSNP+KAITEVPPEGL Q
Sbjct:   13 SASAFVPSASFVGSPVSSVTRPAS--STAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ 123          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: A0A7S0XDX8_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDX8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.450e-27
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  106 DMVGASAPLGFFDPMGFSKGPA-ERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            ++VGASAPLGFFDP GFSKG + E L  YRESELKHGR AMLAV+G+LTQE +HP Y G LS NPL A  EVPP G +Q
Sbjct:   37 ELVGASAPLGFFDPFGFSKGVSDETLFKYRESELKHGRVAMLAVLGWLTQERFHPFYEGKLSGNPLVAFGEVPPLGFVQ 115          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: A0A7S3IA89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3IA89_9SPIT)

HSP 1 Score: 99.0 bits (245), Expect = 8.220e-24
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  106 DMVGASAPLGFFDPMGFSK--GPAERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            DMVGA  PLGFFDP+GFSK   PA  +A +RE+ELKHGR AMLA  G +T + +HPLY+G LSSNPL AI +VP  GLLQ
Sbjct:   19 DMVGACKPLGFFDPLGFSKDASPAS-MAKFREAELKHGRVAMLACAGMITADKFHPLYDGKLSSNPLLAIAQVPKLGLLQ 97          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: A0A7S3AG67_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG67_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 3.290e-23
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1
Query:  106 DMVGASAPLGFFDPMGFSKGPA-ERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            DMVG+SAPLGFFDP+GFSK  + E +  +RE+ELKHGR AMLAV G +T + +HPL+ G  SSNPL A+T+VP  G LQ
Sbjct:   47 DMVGSSAPLGFFDPLGFSKDASPETMKKFREAELKHGRVAMLAVFGMITADKFHPLFGGQCSSNPLLALTQVPKLGWLQ 125          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: I2CPJ1_NANGC (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ1_NANGC)

HSP 1 Score: 97.8 bits (242), Expect = 4.640e-23
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   88 LSMAASDMVGASAPLGFFDPMGFS-KGPAERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            ++M    M+G+SAP   FDP+GF+ K   + L  YRESELKHGR AMLAV+G++ QE WHPLY+G LSSNPLKA+TEVP  G  Q
Sbjct:   35 VNMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWVVQEVWHPLYDGKLSSNPLKALTEVPLIGWAQ 119          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: Q2IA68_ISOGA (Chloroplast light harvesting protein isoform 11 n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q2IA68_ISOGA)

HSP 1 Score: 97.4 bits (241), Expect = 4.960e-23
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 1
Query:  109 MVGASAPLGFFDPMGFSK--GPAERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            MVG SAPLGFFDP GFSK   PA  +A +RE+ELKHGR AMLA  G +T + +HPLY+G LSSNPL AI++VP  GLLQ
Sbjct:   38 MVGDSAPLGFFDPFGFSKEASPAS-MAKFREAELKHGRVAMLASAGMITADKFHPLYDGKLSSNPLLAISQVPKLGLLQ 115          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: A0A0G4GBS7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GBS7_VITBC)

HSP 1 Score: 98.2 bits (243), Expect = 1.740e-22
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  109 MVGASAPLGFFDPMGFSKGPA-ERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            ++G+SAPLGFFDP+GF+K  + + +A  RE ELKHGR AM AV+G++TQ  +HPLY G LS++PLKAITEVP  G++Q
Sbjct:   99 LIGSSAPLGFFDPLGFTKNKSTQEIARLRECELKHGRLAMFAVLGWMTQTVFHPLYGGKLSADPLKAITEVPAPGIIQ 176          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: A0A7S3TFW5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TFW5_EMIHU)

HSP 1 Score: 95.1 bits (235), Expect = 5.280e-22
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:  109 MVGASAPLGFFDPMGFSKGPA-ERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            MVG   PLG+FDP+GFSK  + E +A +RE+ELKHGR AMLA  G +T + +HPL+ G LSSNPL AIT+VP  GLLQ
Sbjct:   49 MVGDCKPLGYFDPLGFSKDASPETMAKFREAELKHGRVAMLACAGMITADKFHPLFGGKLSSNPLLAITQVPKLGLLQ 126          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: A0A7S0E1K9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E1K9_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 1.010e-21
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   76 SSAALSMAASDMVGASAPLGFFDPMGFSKGPA-ERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            SS A+ M    ++G  APL +FDP+GFSK  + E +  YRE+ELKHGR AMLA  G +TQ+ WHPL++G LS+NPL AI + P  G++Q
Sbjct:   23 SSVAVQMKVGGLIGDCAPLAYFDPLGFSKDASPETMKKYREAELKHGRVAMLAAWGMITQDAWHPLFDGKLSANPLLAIIQTPKLGVIQ 111          
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Match: A0A7S4B2U4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2U4_CHRCT)

HSP 1 Score: 94.0 bits (232), Expect = 1.420e-21
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  109 MVGASAPLGFFDPMGFSK--GPAERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPLKAITEVPPEGLLQ 339
            +VG SAPLGFFDP+G++K   PA+ L  YRE ELKHGR AMLA +G +  + WHPLY G  S+NPL AIT+VP  GLLQ
Sbjct:   55 LVGDSAPLGFFDPLGYTKKASPAD-LKKYRECELKHGRVAMLASMGMVVADFWHPLYGGGNSANPLVAITQVPKAGLLQ 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig65.13131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8V9_ECTSI7.700e-5282.30Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S0XDX8_9STRA5.450e-2769.62Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A7S3IA89_9SPIT8.220e-2465.00Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A7S3AG67_9EUKA3.290e-2362.03Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
I2CPJ1_NANGC4.640e-2360.00Protein fucoxanthin chlorophyll a c protein n=1 Ta... [more]
Q2IA68_ISOGA4.960e-2365.82Chloroplast light harvesting protein isoform 11 n=... [more]
A0A0G4GBS7_VITBC1.740e-2260.26Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3TFW5_EMIHU5.280e-2261.54Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S0E1K9_9EUKA1.010e-2152.81Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S4B2U4_CHRCT1.420e-2162.03Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig65contigP-fluviatile_contig65:276484..279442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue8.3e-41
Seed eggNOG ortholog2880.D7G8V9
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CSK6@1,2S49Q@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-15_004430.1
Exons2
Model size343
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817063.920087-CDS-P-fluviatile_contig65:276484..2765741622817063.920087-CDS-P-fluviatile_contig65:276484..276574Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 276485..276574 -
1693570988.8998199-CDS-P-fluviatile_contig65:276484..2765741693570988.8998199-CDS-P-fluviatile_contig65:276484..276574Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 276485..276574 -
1622817063.9331038-CDS-P-fluviatile_contig65:279190..2794421622817063.9331038-CDS-P-fluviatile_contig65:279190..279442Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 279191..279442 -
1693570988.9098592-CDS-P-fluviatile_contig65:279190..2794421693570988.9098592-CDS-P-fluviatile_contig65:279190..279442Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 279191..279442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig65.13131.1prot_P-fluviatile_contig65.13131.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig65 276485..279442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig65.13131.1

>prot_P-fluviatile_contig65.13131.1 ID=prot_P-fluviatile_contig65.13131.1|Name=mRNA_P-fluviatile_contig65.13131.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=114bp
SASAFVPTTSFAGSRVVAPVHASSPSSAALSMAASDMVGASAPLGFFDPM
GFSKGPAERLAAYRESELKHGRTAMLAVVGFLTQENWHPLYNGSLSSNPL
KAITEVPPEGLLQA
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mRNA from alignment at P-fluviatile_contig65:276484..279442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig65.13131.1 ID=mRNA_P-fluviatile_contig65.13131.1|Name=mRNA_P-fluviatile_contig65.13131.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2959bp|location=Sequence derived from alignment at P-fluviatile_contig65:276484..279442- (Porterinema fluviatile SAG_2381)
AGCGCCTCGGCGTTCGTGCCGACGACCTCTTTCGCCGGCTCGCGAGTTGT CGCCCCCGTGCACGCCTCCTCCCCTTCCTCCGCCGCCCTTTCCATGGCGG CGTCGGACATGGTTGGCGCCAGCGCACCGCTGGGTTTCTTCGACCCAATG GGCTTCTCCAAGGGCCCCGCGGAGCGCCTGGCGGCGTACCGCGAGTCGGA GCTGAAGCACGGCCGCACCGCCATGCTCGCCGTCGTCGGGTTCCTCACCC AGGTCAGTCCACTTGTCGATGGGTCGTCGGTTGATACTGATTTGGACAAG GCGTTTTTTCTCTGTTGGTTGGAGTTTGTGTGATGGTTCCGTTCTCTCTG GGGTCTGTCCTTGACTGTATTCCCTGACTTACGGTACGAGTTTTTTGTTG TATAGCTCTCGCGCCCTCCCTCGTTTTCCGTTGCTTGATGCCCCCCTTTT TCGTTGTTCGACGCCCTGATGAAGCCCGGAGAAAGCATACCCTGACGATC GGTCCATGTGGTGTTTTAGCTCGTGTCCGTGGCATCGTGGACTTTGTCTG CCGAACGCACATGCGTTTCCCCCGCTGCTGCCGGTACGAAATTCAATGTA CATGCCGTACCGCCGTCATGAATATCGGATGTCGATGGAGAGACGTCGAC ATCAAATGGCGGGCAGGGAGGGGTTGGGCACGCGGAGTTCCACATTGCGT GTGGTGGCATTCGATTTTCCGACGAGTCCGTTCCGTTCGCCCCAACAGCT CGTGCTTTTCGTGTCGACCGTCGCGTCCGTTCCCCGCCAGCGGTTGACCG TTGGTGCATCCGGCGGGATATGGACGCTGCGCCGAAACGGAATGCGCGGG GTATTGATTCCGAAAGCACACACACTCCGGATGAACGAATGTCACCAGCC TCGGGATGCACGCCCTCCCCACCCCTACCCATCCCGCCCCACCCCGCCCG ACGGGTTATGGACGTCATACCGAGACGGGAAAGAGAAGGTGTCGTTAGTC GCCAAATGCGCACTCGCGCGGGTTGGGGCTAGCAGCGGGAGCGATTTAGC GTTCCGGCGGGCTCCTCCTGGCCCTTGAACTCTTCGATGCGTTCACGGCA GGATACTCCGTTGGTTCTTTGCCTCGTGCTCCTGCGGTTGTTGCGGCACA AAATGCGGGAGCTCGGAGGCAAGAATTAAGAGAATATCCTCCAGTGAAGG CAGACCAGGGTTTGACGACTTGGTGTAGCACTTTCGGGGTGGTAACCGCC TCCCGCCCCTCCCTATCCGTATCGCTCCCCACGGTGTACCGTTTTGTTCC CGTCGTTCCTGAATCTTGGTTCGCTCATTTTTTTTTTTTTTTTTCCGAGG TGGTATCCGATCCTGCAGAGAGCAACATTAGTCAAGGGGTCCGAGGTTCC AATCCAACTGTCACGGGATGGGAGCAGTAGGCCGTACAGCAGTGGGGGCG TGGAAGGAAGCCCTCGCTCAAGTTTTTTCTTTCTTTTATGCTGCTCAGCC TTCATGCGACTCGCTGAACGCTTCGTGCATAGTGAGTGCGAGGCTGGGCC GGTGTTGATACGTCCAACCGCGCCGTCATTTGAAGAATTGCGAGTTTTAT GGCCTAAGCGTTATGGGTTGCGTGACTTGAGTGCCCCTTCCCCCCCTCCT CCGGCAGCCGCTCTTAGTTTCATGCACGAAAAGGTTATGCGATGATCGTT TATATTTATTTGAACGGAAAGTCTGGAAAGTCTTCCCCGCCCGTGAAACA TAGGGGAGTCAACGGTGTCATGGAGCCGCGGGGGCGCTTTTCGCCCCCTC GCCCCCCCTTCCCCCCACCCTCTCGTCCTCTCCTCCCCTGAACCCGGACC ATTCGACCACACATATTCGTCGGGGTTCGGGTCGGGTTAAGGGAAAGGCG TCCGGAAGATTGGCTCCCCCGCGGATGGTGAAAGTGTTGTGGGGTGTGTG TGTTGTAACTGATGATTCGCTTTAGAACTTGTCGATCACACATCTCAAGT ATCTCTCGAATGCCTGTCGTCCTGGCCTCGCATTCGTTCAATCTGCGTGT GTTATTTTCGGCAGCACATTTCGCTTTGGTAAGCTTGAGCCGGTAGGCGA ACTCAGTATGGTACCGAGAGTAGTTTATCTACACGCGCCGATCAAAGCTT GCCGAAGCAGCTTCGCTACTCGTAGTGTCCAGTCCTCCCAAGTCTTGGAT GCCGCCAACAGCAAGGTTTATTCTTGGTTTGAGGCGTCCGTGCTCCTGCT CTCGCAGCAAACAACAGCAGGAGCAAGGAGAACACGATCCACAAAGATCC GCACGGCGATGGCACGCCAGAGCTTGGAGGACTGGGAGCAGTACGTTGGG GTGTATTTGCTGTTGATCCCCTCCCAGTGTTGATGCCATACACGGCACAG CGCCTGGACGCGGCGGTGGTTCACCTGAAGGCGTTTTCTCGTGATCTCGC GTGTTTCGTTTGTTTAACGGCGCGAGAGATTCGAGTCCTGTGTTCCTTTT CTGGCTGTCCAGAGAGCAGCAGCTTTGCACGTGAAAGCGCGCGGGTTTTT TTCGGGACACCAGCCCTCTGACACTCGGCTGGTCACTTGTAGTGCGCTCG GAGGTCAAGGAGGGCTGGGGCGAGTTGCTTGGATCTCCCCCAAAACGAAG TGTGATGCGACAGGACTACGGCGGGATTCCCTCGCCCGTTGCACTAAATT CGGTGCCGAATGAAGACATGCAATCGAATATACGCTCCACTGTACACCCT TTCCTGTCATTTTCGAGGCCGTGCCTGCGTGGTCTCACGATTTTTGCTCC TGTGATATCCCGCCATTCTGCTCCCCGCAATTAATTTTCCATGCATCGTC TCCCGGTCCCGCGCGCAGGAGAACTGGCACCCCCTGTACAATGGCAGCCT GTCCTCCAACCCCCTCAAGGCCATCACCGAGGTCCCGCCGGAGGGGCTCT TGCAGGCAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig65:276484..279442-

>mRNA_P-fluviatile_contig65.13131.1 ID=mRNA_P-fluviatile_contig65.13131.1|Name=mRNA_P-fluviatile_contig65.13131.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=684bp|location=Sequence derived from alignment at P-fluviatile_contig65:276484..279442- (Porterinema fluviatile SAG_2381)
AGCGCCTCGGCGTTCGTGCCGACGACCTCTTTCGCCGGCTCGCGAGTTGT
CGCCCCCGTGCACGCCTCCTCCCCTTCCTCCGCCGCCCTTTCCATGGCGG
CGTCGGACATGGTTGGCGCCAGCGCACCGCTGGGTTTCTTCGACCCAATG
GGCTTCTCCAAGGGCCCCGCGGAGCGCCTGGCGGCGTACCGCGAGTCGGA
GCTGAAGCACGGCCGCACCGCCATGCTCGCCGTCGTCGGGTTCCTCACCC
AGAGCGCCTCGGCGTTCGTGCCGACGACCTCTTTCGCCGGCTCGCGAGTT
GTCGCCCCCGTGCACGCCTCCTCCCCTTCCTCCGCCGCCCTTTCCATGGC
GGCGTCGGACATGGTTGGCGCCAGCGCACCGCTGGGTTTCTTCGACCCAA
TGGGCTTCTCCAAGGGCCCCGCGGAGCGCCTGGCGGCGTACCGCGAGTCG
GAGCTGAAGCACGGCCGCACCGCCATGCTCGCCGTCGTCGGGTTCCTCAC
CCAGGAGAACTGGCACCCCCTGTACAATGGCAGCCTGTCCTCCAACCCCC
TCAAGGCCATCACCGAGGTCCCGCCGGAGGGGCTCTTGCAGGCAGAGAAC
TGGCACCCCCTGTACAATGGCAGCCTGTCCTCCAACCCCCTCAAGGCCAT
CACCGAGGTCCCGCCGGAGGGGCTCTTGCAGGCA
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