mRNA_P-fluviatile_contig64.13103.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig64.13103.1
Unique NamemRNA_P-fluviatile_contig64.13103.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig64.13103.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.120e-10
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:    3 IDGKLLSVDRSFKVAKVVRARVTRSGADTMPFHLVVTFFNEFEQA 137
            +DG +L VD SFK+AK+VR R   + ADT PFH VVT FNEFEQA
Sbjct:  109 VDGTVLKVDASFKLAKLVRVRAPGAAADTKPFHCVVTLFNEFEQA 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig64.13103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFL9_9PHAE5.120e-1064.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig64contigP-fluviatile_contig64:812102..812714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size195
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig64.13103.1prot_P-fluviatile_contig64.13103.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig64 812102..812693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817050.27521-CDS-P-fluviatile_contig64:812101..8122351622817050.27521-CDS-P-fluviatile_contig64:812101..812235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 812102..812235 +
1693570939.132505-CDS-P-fluviatile_contig64:812101..8122351693570939.132505-CDS-P-fluviatile_contig64:812101..812235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 812102..812235 +
1622817050.2856627-CDS-P-fluviatile_contig64:812632..8126931622817050.2856627-CDS-P-fluviatile_contig64:812632..812693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 812633..812693 +
1693570939.1411362-CDS-P-fluviatile_contig64:812632..8126931693570939.1411362-CDS-P-fluviatile_contig64:812632..812693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 812633..812693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817050.2956564-UTR-P-fluviatile_contig64:812693..8127141622817050.2956564-UTR-P-fluviatile_contig64:812693..812714Porterinema fluviatile SAG_2381UTRP-fluviatile_contig64 812694..812714 +
1693570939.1491234-UTR-P-fluviatile_contig64:812693..8127141693570939.1491234-UTR-P-fluviatile_contig64:812693..812714Porterinema fluviatile SAG_2381UTRP-fluviatile_contig64 812694..812714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig64.13103.1

>prot_P-fluviatile_contig64.13103.1 ID=prot_P-fluviatile_contig64.13103.1|Name=mRNA_P-fluviatile_contig64.13103.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=65bp
SSTVSCSVSTGRSRLPRWCGHGSLAAVQIQCPSTLWSPSSTSSNRQWIRP
PGALEHGRAAKMRP*
back to top

mRNA from alignment at P-fluviatile_contig64:812102..812714+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig64.13103.1 ID=mRNA_P-fluviatile_contig64.13103.1|Name=mRNA_P-fluviatile_contig64.13103.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=613bp|location=Sequence derived from alignment at P-fluviatile_contig64:812102..812714+ (Porterinema fluviatile SAG_2381)
TCATCGACGGTAAGCTGCTCAGTGTCGACCGGTCGTTCAAGGTTGCCAAG
GTGGTGCGGGCACGGGTCACTCGCAGCGGTGCAGATACAATGCCCTTCCA
CCTTGTGGTCACCTTCTTCAACGAGTTCGAACAGGTGAGGGCGGAGTTCA
CGTGCATCGTATATTGTCAAGGCGGTACTTGCATAATTTGAGTATTCAAA
GTGCATATCTCACGTTTGCGAGGTACATGTGTTTTGAAGCAACGCTTGGT
ACTGAAGCATCTTTGACGTGTAAATGATCTGCGGCATTTTTTCACCGTGC
CTTGTCAACTTTGGCTATCTCAAGTCAGCACGACTGCCTCTTCACAACGC
ACGAATCGCGTTTCAGATCGCATTTCAGCGAAGATAGATTGCAAGTTCGG
CGTCGGCGGAATTCTTATGCACGAGTGTCACTTTTGTTGCGTCCAGGTGG
TGATGCAAAAATCGTTGTAGTCGGCCTCGTTTCGTGAAGTCAAGCAAGAC
GTGAAGGCGCTATTTGTTGCGCGATATAAAGGCAGTGGATTCGACCTCCC
GGAGCTCTTGAGCACGGAAGGGCTGCGAAGATGAGGCCCTGATGAACGAG
ATACTTCAGGAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig64:812102..812714+

>mRNA_P-fluviatile_contig64.13103.1 ID=mRNA_P-fluviatile_contig64.13103.1|Name=mRNA_P-fluviatile_contig64.13103.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig64:812102..812714+ (Porterinema fluviatile SAG_2381)
TCATCGACGGTAAGCTGCTCAGTGTCGACCGGTCGTTCAAGGTTGCCAAG
GTGGTGCGGGCACGGGTCACTCGCAGCGGTGCAGATACAATGCCCTTCCA
CCTTGTGGTCACCTTCTTCAACGAGTTCGAACAGTCATCGACGGTAAGCT
GCTCAGTGTCGACCGGTCGTTCAAGGTTGCCAAGGTGGTGCGGGCACGGG
TCACTCGCAGCGGTGCAGATACAATGCCCTTCCACCTTGTGGTCACCTTC
TTCAACGAGTTCGAACAGGCAGTGGATTCGACCTCCCGGAGCTCTTGAGC
ACGGAAGGGCTGCGAAGATGAGGCCCTGAGCAGTGGATTCGACCTCCCGG
AGCTCTTGAGCACGGAAGGGCTGCGAAGATGAGGCCCTGA
back to top