mRNA_P-fluviatile_contig64.13083.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig64.13083.1
Unique NamemRNA_P-fluviatile_contig64.13083.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.380e-67
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 2 
Query:    2 MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            MI+PSAKE AEPN YYNGHK GFGMNFQAVCDAQYRI+AWTM+CPGSQNDRTAFN A F+KLLA LPEGHFVVGDAAY AS+RV+VPFPGTSLSASQDACNYYVSQCR AIE
Sbjct:   32 MIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIE 143
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 9.130e-67
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 2 
Query:    2 MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            MI+PSAKE AEPN YYNGHKKGFGMNFQAVCDAQYRI+AW MNCPGSQNDRTAFN +GF+KLLA LPEGHFVVGDAAY AS+RV+VPFPGTSLSASQDACNYYVSQCR AIE
Sbjct:  184 MIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIE 295
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 4.430e-47
Identity = 71/112 (63.39%), Postives = 90/112 (80.36%), Query Frame = 2 
Query:    2 MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            + EPS +    P  +Y+GHKKGFGMNFQAVC+A+Y+I AWTMNCPGS NDRTAF  +GFE++L  LP+G ++VGD AYPASD+VLVP+PGT+L+ SQD+ N+Y SQ R  IE
Sbjct:  125 IFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIE 236
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 4.580e-47
Identity = 75/96 (78.12%), Postives = 83/96 (86.46%), Query Frame = 2 
Query:   50 NGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            +GH       + AVCDAQYRI+AW MNCPGSQNDRTAFN +GF+KLLA LPEGHFVVGDAAY AS+RV+VPFPGTSLSASQDACNYY+SQCR AIE
Sbjct:  129 DGHVIARSTAYHAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIE 224
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.050e-45
Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 2 
Query:    2 MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            M +PS +    P S+Y+GHKKGFGMNFQ VC+A+Y IIAWTMNCPGS NDRTAF  + F  +L  LP G ++VGDAAYPASD+VLVP+PGTSL+ SQDA N+Y SQ R +IE
Sbjct:  191 MTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIE 302
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.730e-45
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 2 
Query:    2 MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            +I P  K  A P S+Y+GHKK FGMNFQ +C+A Y II WTMNCPGSQNDRTAF  +GF+ LL+ +P   F+VGDAAYPAS+RVLVP PGT+L+ SQDA N+Y SQ R +IE
Sbjct:  195 LIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIE 306
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.260e-33
Identity = 65/92 (70.65%), Postives = 71/92 (77.17%), Query Frame = 2 
Query:    2 MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTS 277
            MI+PSAKE AEPN YYNGHKKGFGMNFQ VC               SQNDRTAFN +GF+KLLA LPEGHFVVG+AAY AS+RV+VPFPGTS
Sbjct:  195 MIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC---------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTS 270
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5J641_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J641_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-18
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 2 
Query:   83 QAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            Q +CDA Y + A   N PGS N R A+  A F++L+  LP  + VVGD AY A+D++LVP+PG  L A Q A N++ SQ R  IE
Sbjct:    3 QVICDADYIVTAACCNTPGSTNVRQAYKEAEFDQLVEGLPGNYDVVGDTAYGATDKMLVPYPGCDLDADQQAFNFFQSQGRMCIE 87
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BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.670e-18
Identity = 53/112 (47.32%), Postives = 57/112 (50.89%), Query Frame = 2 
Query:    2 MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDACNYYVSQCRTAIE 337
            MI+PSAKE AEPN YYNGH+KG                                                 VVGDAAY AS+RV+VPFPGTSLSASQDACN YVSQ R AIE
Sbjct:  181 MIKPSAKEVAEPNLYYNGHRKGV------------------------------------------------VVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIE 244
[Close]
BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Match: A0A6G0K3H8_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0K3H8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.130e-16
Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = 2 
Query:   11 PSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQNDRTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGT-SLSASQDACNYYVSQCRTAIE 337
            P  KE +   S+++GH + +G+N QA CD   R  A   + PG   D  AF      +++ +LP G +VVGD AY  ++++L PFP   + SA+ D+ N+++SQ R  IE
Sbjct:  181 PQKKEVSRVRSFFSGHYQRYGVNVQACCDHLSRFTAVACSSPGGTGDAVAFLKWKLSRVVNELPNGLYVVGDKAYTNTNQLLTPFPRPRTTSAAHDSYNFHLSQLRIRIE 290
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig64.13083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KNF2_9PHAE1.380e-6787.50DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE9.130e-6788.39DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE4.430e-4763.39DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE4.580e-4778.13DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE1.050e-4565.18DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE4.730e-4564.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE3.260e-3370.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J641_9PHAE1.600e-1848.24DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE1.670e-1847.32DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6G0K3H8_9STRA2.130e-1637.27DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig64contigP-fluviatile_contig64:594244..595023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue2e-15
Seed eggNOG ortholog4792.ETI53028
EggNOG free text desc.nuclease activity
EggNOG OGs3QI3U@4776,KOG4585@1,KOG4585@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig64.13083.1prot_P-fluviatile_contig64.13083.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig64 594244..595022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817058.3348148-CDS-P-fluviatile_contig64:594243..5944951622817058.3348148-CDS-P-fluviatile_contig64:594243..594495Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 594244..594495 -
1693570977.3004901-CDS-P-fluviatile_contig64:594243..5944951693570977.3004901-CDS-P-fluviatile_contig64:594243..594495Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 594244..594495 -
1622817058.3456182-CDS-P-fluviatile_contig64:594938..5950221622817058.3456182-CDS-P-fluviatile_contig64:594938..595022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 594939..595022 -
1693570977.312452-CDS-P-fluviatile_contig64:594938..5950221693570977.312452-CDS-P-fluviatile_contig64:594938..595022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 594939..595022 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817058.3565729-UTR-P-fluviatile_contig64:595022..5950231622817058.3565729-UTR-P-fluviatile_contig64:595022..595023Porterinema fluviatile SAG_2381UTRP-fluviatile_contig64 595023..595023 -
1693570977.3224096-UTR-P-fluviatile_contig64:595022..5950231693570977.3224096-UTR-P-fluviatile_contig64:595022..595023Porterinema fluviatile SAG_2381UTRP-fluviatile_contig64 595023..595023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig64.13083.1

>prot_P-fluviatile_contig64.13083.1 ID=prot_P-fluviatile_contig64.13083.1|Name=mRNA_P-fluviatile_contig64.13083.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
MIEPSAKETAEPNSYYNGHKKGFGMNFQAVCDAQYRIIAWTMNCPGSQND
RTAFNVAGFEKLLADLPEGHFVVGDAAYPASDRVLVPFPGTSLSASQDAC
NYYVSQCRTAIE
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mRNA from alignment at P-fluviatile_contig64:594244..595023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig64.13083.1 ID=mRNA_P-fluviatile_contig64.13083.1|Name=mRNA_P-fluviatile_contig64.13083.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig64:594244..595023- (Porterinema fluviatile SAG_2381)
GATGATCGAGCCGAGCGCGAAGGAGACCGCGGAGCCGAACAGCTATTACA
ACGGGCACAAGAAAGGCTTCGGCATGAACTTCCAGGTACGAGCAGGTGTT
GAGCATGTGCACACATGTATAGCTTCTTTCGTCGGCAGCCTGTACTGGCG
CCAGGTGCTCTTTCGCCCGCAAAGCAGCGACGGACCCTCTCGGGTGCGGT
TGTGCTCGATAGTCCAAGGAAGCTCTCGAGTGTATTGTGCACTCCCCATC
GCACAGGATTCATCAATGTGTTGCGCACTTAAAGTACAGCGGTGTTGTCG
AGGCGTGTCATGGATTTGTTTCACAGGCTGGAAGAGCCCTGCTGTTGCTG
TCGCACATGGTCGAAAGTTGTGCAGATTCGCCTTGTGCTTGCGGTCCTCC
GTACTGAGCGGGCACGTGGGCGTGCCGTGCGTGCTCCTTTGATGATCCGT
TTCGAACCATTTCGCCTTTGTTGATGGCACTCTTCACGTTCTTACATGTT
CACGCACACGCTGTCAATCTTACTTCAGGCAGTATGCGACGCCCAGTATC
GCATCATCGCATGGACGATGAACTGCCCCGGAAGCCAAAACGACCGGACG
GCGTTCAACGTAGCGGGGTTCGAGAAACTCCTGGCGGACTTGCCCGAAGG
CCATTTTGTCGTGGGTGACGCGGCGTATCCGGCGTCCGACCGCGTCCTCG
TCCCGTTCCCGGGGACAAGCCTCTCCGCCAGCCAAGACGCGTGCAACTAC
TACGTGTCTCAGTGCCGGACGGCCATCGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig64:594244..595023-

>mRNA_P-fluviatile_contig64.13083.1 ID=mRNA_P-fluviatile_contig64.13083.1|Name=mRNA_P-fluviatile_contig64.13083.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=672bp|location=Sequence derived from alignment at P-fluviatile_contig64:594244..595023- (Porterinema fluviatile SAG_2381)
ATGATCGAGCCGAGCGCGAAGGAGACCGCGGAGCCGAACAGCTATTACAA
CGGGCACAAGAAAGGCTTCGGCATGAACTTCCAGATGATCGAGCCGAGCG
CGAAGGAGACCGCGGAGCCGAACAGCTATTACAACGGGCACAAGAAAGGC
TTCGGCATGAACTTCCAGGCAGTATGCGACGCCCAGTATCGCATCATCGC
ATGGACGATGAACTGCCCCGGAAGCCAAAACGACCGGACGGCGTTCAACG
TAGCGGGGTTCGAGAAACTCCTGGCGGACTTGCCCGAAGGCCATTTTGTC
GTGGGTGACGCGGCGTATCCGGCGTCCGACCGCGTCCTCGTCCCGTTCCC
GGGGACAAGCCTCTCCGCCAGCCAAGACGCGTGCAACTACTACGTGTCTC
AGTGCCGGACGGCCATCGAGGCAGTATGCGACGCCCAGTATCGCATCATC
GCATGGACGATGAACTGCCCCGGAAGCCAAAACGACCGGACGGCGTTCAA
CGTAGCGGGGTTCGAGAAACTCCTGGCGGACTTGCCCGAAGGCCATTTTG
TCGTGGGTGACGCGGCGTATCCGGCGTCCGACCGCGTCCTCGTCCCGTTC
CCGGGGACAAGCCTCTCCGCCAGCCAAGACGCGTGCAACTACTACGTGTC
TCAGTGCCGGACGGCCATCGAG
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