mRNA_P-fluviatile_contig63.13014.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig63.13014.1
Unique NamemRNA_P-fluviatile_contig63.13014.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: D7G6G8_ECTSI (Dynein 18 kDa light chain, flagellar outer arm n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6G8_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 5.330e-91
Identity = 136/151 (90.07%), Postives = 144/151 (95.36%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLTAS 453
            MSLSQEEID CQEAFREVDVGRRGNINVWELR+VLQELGQNPTDKEFFEVVSTVDR+MKG IDFTSFLKIVASQK  +S+ +GDSGDLVDAFVACGGN DETG+ADV+KIVKIVKTDFGLDVDIE II+TLDVDGAGQLGFAQFKEMLTAS
Sbjct:    1 MSLSQEEIDACQEAFREVDVGRRGNINVWELRIVLQELGQNPTDKEFFEVVSTVDREMKGLIDFTSFLKIVASQKSVRSIWSGDSGDLVDAFVACGGNPDETGSADVDKIVKIVKTDFGLDVDIEAIIDTLDVDGAGQLGFAQFKEMLTAS 151          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: A0A835Z187_9STRA (EF hand-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z187_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.130e-45
Identity = 75/149 (50.34%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M L+QEEIDGC++AF   D  R GNI+VWELR VL+ +GQ PT++E F+++S VD +M G IDF+ FLK++ +QK  ++    D  D++DAFVACGG A+++G    + +VKI+K DFGL +DIE +I  +DVDG+G++ F +FK +L+
Sbjct:    1 MVLTQEEIDGCRDAFLAFDKDRSGNIDVWELRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFSEFLKVIENQK-MRAESFDDETDMIDAFVACGGLANKSGHVKRDTLVKIIKQDFGLTIDIEDLINRIDVDGSGEIEFEEFKTLLS 148          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: A0A7S2GY36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GY36_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.490e-45
Identity = 74/149 (49.66%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M LSQ+EIDGC+EAF   D  + G I+VWELR VL+ +GQ PT++E F+++S VD +M G IDF  FL ++ +QK +++    D  D++DAFVACGG AD+TG    + +VKI+KTDFGL +DIE +I  +D DG+G++ F +F  +L+
Sbjct:    1 MVLSQDEIDGCREAFLAFDKDQSGTIDVWELRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFAEFLLVIENQK-SRAESFDDENDMIDAFVACGGKADKTGHVKRDTLVKIIKTDFGLTIDIEDLINKIDTDGSGKIEFDEFMTLLS 148          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: F0WBF6_9STRA (Dynein light chain putative n=15 Tax=Oomycota TaxID=4762 RepID=F0WBF6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.480e-44
Identity = 75/149 (50.34%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M L+Q+EID C+EAF   D  R G I+VWELR VLQ +GQ PT++E F+++S VD DM G IDF  FL+++ +QK   ++   DS D++DAFVACGG++D++G      ++KI+K DFGL ++IE +I  LDVDG G++ F +FK +LT
Sbjct:   28 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLQAMGQQPTEEELFQMISEVDNDMSGAIDFAEFLQVIDNQKDRAALYDDDS-DMIDAFVACGGSSDKSGFVRKEGLIKIIKQDFGLTINIEEMINKLDVDGNGKIKFKEFKAILT 175          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: D8LKX2_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX2_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.530e-44
Identity = 74/149 (49.66%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M L+QEEIDGC++AF   D  R GNI+VWELR VL+ +GQ PT++E F+++S VD +M G IDF  FLK++ +QK  ++    D  D++DAFVACGG  D+TG      +VKI+K DFGL ++IE +I  +D DG+G++ F +FK +L+
Sbjct:   29 MVLTQEEIDGCRDAFLAFDKDRSGNIDVWELRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVIENQK-TRAQNFDDETDMIDAFVACGGRMDKTGHVKRGALVKIIKVDFGLTINIEDLINKIDADGSGEIEFPEFKALLS 176          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: A0A812KW91_SYMMI (Calmodulin n=6 Tax=cellular organisms TaxID=131567 RepID=A0A812KW91_SYMMI)

HSP 1 Score: 151 bits (382), Expect = 2.630e-44
Identity = 74/149 (49.66%), Postives = 105/149 (70.47%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M LSQEEIDGC+EAF   D  R G I+VWELR VL+ +GQ PT++E F+++S VD +M G IDF  FLK++ +QK  ++    D  D++DAFVACGG  D++G      +V+I+K DFGL +DIE +I  +D DG+G++ F +FK +L+
Sbjct:    1 MVLSQEEIDGCREAFLAFDKDRSGTIDVWELRQVLEAMGQKPTEEELFQMISEVDENMSGSIDFAEFLKVIENQK-ERAENFDDESDMIDAFVACGGLQDKSGHVKRETLVRIIKHDFGLTIDIEELINKIDTDGSGEIEFEEFKTLLS 148          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: A0A812ZLM1_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZLM1_SYMMI)

HSP 1 Score: 151 bits (382), Expect = 2.970e-44
Identity = 71/149 (47.65%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M LSQEEIDGC+EAF   D  R G I++WELR VL+ +GQ+PT++E F+++S VD +M G IDF+ FLK++ +QK  ++    D  D++DA+VACGG  D++G    + +++I+K DFGL ++IE +I  +D DG+G++ F +FK +LT
Sbjct:    5 MVLSQEEIDGCREAFLAFDKDRSGTIDIWELRQVLEAMGQSPTEEELFQMISEVDENMSGAIDFSEFLKVIENQK-ERAESFDDESDMIDAYVACGGQPDKSGHVARDTLIRIIKQDFGLPINIEELINKVDTDGSGEIEFDEFKTLLT 152          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: A0A7S1CKF1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKF1_9STRA)

HSP 1 Score: 151 bits (382), Expect = 9.970e-44
Identity = 73/149 (48.99%), Postives = 105/149 (70.47%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M L+QEEIDGC++AF   D  R G I+VWELR VL+ +GQ PT++E F+++S VD +M G IDF  FLK++  QK  ++    D  D++DAFVACGG AD+ G    + +VKI+K DFGL +DIE +I  +D DG+G++ + +FK +L+
Sbjct:   45 MPLTQEEIDGCRDAFLAFDKDRSGTIDVWELRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFGEFLKVIEKQK-ERAAKFDDESDMIDAFVACGGKADKEGHVHRDTLVKIIKHDFGLTIDIEQLINEIDADGSGEIEYEEFKSLLS 192          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: A0A485KGT0_9STRA (Aste57867_5639 protein n=8 Tax=Oomycota TaxID=4762 RepID=A0A485KGT0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.510e-43
Identity = 72/149 (48.32%), Postives = 105/149 (70.47%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M L+Q+EID C+EAF   D  R G I+VWELR VL+ +GQ PT++E F+++S VD DM G IDF  FL+++ +QK  ++    D  D++DAFVACGG  D+TG    + +VKI+K DFGL ++IE +I  LD++ +G++ F +FK +LT
Sbjct:    1 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLEAMGQQPTEEELFQMISEVDEDMSGAIDFAEFLQVIDNQKD-RAALYNDESDMIDAFVACGGKPDKTGVVKRDTLVKIIKLDFGLTINIEEMINKLDINQSGEIEFDEFKAILT 148          
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Match: A0A7S1XYK3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK3_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.540e-43
Identity = 73/149 (48.99%), Postives = 104/149 (69.80%), Query Frame = 1
Query:    1 MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEVVSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNADETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLT 447
            M L+QEEIDGC+EAF   D  R G I+VWELR VL+ +GQ PT++E F+++S VD +M G IDF  FLK++ +QK  ++    D  D++DAFVACGG  D+ G      +VKI+K DFGL +DIE +I  +D DG+G++ F +F+ +L+
Sbjct:   48 MVLTQEEIDGCREAFLAFDKDRSGTIDVWELRQVLEAMGQKPTEEELFQMISEVDENMSGSIDFAEFLKVIENQKD-RAENFDDETDMIDAFVACGGRPDKEGNVKRETLVKIIKQDFGLTIDIEELINKIDTDGSGEIEFEEFRTLLS 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig63.13014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6G8_ECTSI5.330e-9190.07Dynein 18 kDa light chain, flagellar outer arm n=2... [more]
A0A835Z187_9STRA1.130e-4550.34EF hand-containing protein n=1 Tax=Tribonema minus... [more]
A0A7S2GY36_9STRA6.490e-4549.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0WBF6_9STRA1.480e-4450.34Dynein light chain putative n=15 Tax=Oomycota TaxI... [more]
D8LKX2_ECTSI1.530e-4449.66Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A812KW91_SYMMI2.630e-4449.66Calmodulin n=6 Tax=cellular organisms TaxID=131567... [more]
A0A812ZLM1_SYMMI2.970e-4447.65Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
A0A7S1CKF1_9STRA9.970e-4448.99Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A485KGT0_9STRA1.510e-4348.32Aste57867_5639 protein n=8 Tax=Oomycota TaxID=4762... [more]
A0A7S1XYK3_9STRA1.540e-4348.99Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig63contigP-fluviatile_contig63:686658..691868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.4
Seed ortholog evalue1.6e-71
Seed eggNOG ortholog2880.D7G6G8
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein 18 kDa light chain, flagellar outer arm
Ec32 orthologEc-05_006150.1
Exons4
Model size456
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig63.13014.1prot_P-fluviatile_contig63.13014.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig63 686658..691868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.7809992-CDS-P-fluviatile_contig63:686657..6867661622817048.7809992-CDS-P-fluviatile_contig63:686657..686766Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 686658..686766 +
1693570933.9053483-CDS-P-fluviatile_contig63:686657..6867661693570933.9053483-CDS-P-fluviatile_contig63:686657..686766Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 686658..686766 +
1622817048.7938402-CDS-P-fluviatile_contig63:690308..6903861622817048.7938402-CDS-P-fluviatile_contig63:690308..690386Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 690309..690386 +
1693570933.9197743-CDS-P-fluviatile_contig63:690308..6903861693570933.9197743-CDS-P-fluviatile_contig63:690308..690386Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 690309..690386 +
1622817048.8055966-CDS-P-fluviatile_contig63:690624..6907021622817048.8055966-CDS-P-fluviatile_contig63:690624..690702Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 690625..690702 +
1693570933.9283633-CDS-P-fluviatile_contig63:690624..6907021693570933.9283633-CDS-P-fluviatile_contig63:690624..690702Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 690625..690702 +
1622817048.8178923-CDS-P-fluviatile_contig63:691677..6918681622817048.8178923-CDS-P-fluviatile_contig63:691677..691868Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 691678..691868 +
1693570933.9366932-CDS-P-fluviatile_contig63:691677..6918681693570933.9366932-CDS-P-fluviatile_contig63:691677..691868Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 691678..691868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig63.13014.1

>prot_P-fluviatile_contig63.13014.1 ID=prot_P-fluviatile_contig63.13014.1|Name=mRNA_P-fluviatile_contig63.13014.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=152bp
MSLSQEEIDGCQEAFREVDVGRRGNINVWELRVVLQELGQNPTDKEFFEV
VSTVDRDMKGFIDFTSFLKIVASQKGAKSVCTGDSGDLVDAFVACGGNAD
ETGTADVNKIVKIVKTDFGLDVDIEGIIETLDVDGAGQLGFAQFKEMLTA
S*
back to top

mRNA from alignment at P-fluviatile_contig63:686658..691868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig63.13014.1 ID=mRNA_P-fluviatile_contig63.13014.1|Name=mRNA_P-fluviatile_contig63.13014.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5211bp|location=Sequence derived from alignment at P-fluviatile_contig63:686658..691868+ (Porterinema fluviatile SAG_2381)
ATGTCTCTATCTCAGGAGGAAATCGACGGCTGCCAGGAGGCATTCCGAGA GGTGGATGTTGGCAGGCGCGGTAACATCAACGTTTGGGAGCTGCGCGTCG TTCTTCAGGGTGAGAAGTTCGGACGCATTCGCTTGGTTTATAACACATGA AGCTGTGAGAGTATACGCGGCTGTAGTGAAGCCCAGAGCTGAAGCTCTGC GTGCACCTGCTACAGTTCGTTCCACTGATTCTTGAGTTTGATCCACCACC TGCATCGTGACCTCAACCTGAAAAAAACATGAGGAGACTGCTGTGCGCTT CGATTTCACGGCACCATCAAAGCATCAAACATCAGATATGAACGAATTCT CTACAACCAGAAAGTAAAGGTCGCCACTCAGGTAATGATCTCAAGAAGGG TCCACCGATACAAGCTCTCTATACAGGGGCGTCAAGAAGCCGAAGGGAGG AGATTGCGAATGGGCGAATCGACTCCAATGGTGTGGGGACTAGATCTTGA TGAATGAAATGGTAGCTAGACCAGATTGGAATGAAGATCGTAGTCTCTAC ATATGTGCATTTGTTGTATTTGATGTACTGGCAGGGAGCAAAACGAGTAG GCCATACAGAGAGTAGCAAATACTCTCGGAGTATCGAGCATCGAGAGGTA CAGGGAGGAACACGGGGACAGAAAGGGTGACAGTAGAGAGGATTTTCTTC ACCATTTTAAAGGTGAAATAAGTCAAAATTATTGAACGGAAGGAGTAGGT GTTTTCAACCTTTTTTGATGTCATGTATGTGTGTCGTTCGGCAAATGATC GGAAGGCATTCGATATAATGATAAAAAAGGAACAGCGCCATAATGACCCG AGAGTATATTTCCATCAATCAACGATGCGTAACAGCTTTTTGTGCGCCAG ACGGTGCGGAGACAAAATATTTGCTTCACTCCAGACGGGGCAGCAGTGCG TGCACACCCTGCCCTGTGATGAATTACGCGCGGTGAGAACAAAGATTCCC GTTGATTTCCCTCAAATAGGATGCGTCTACTGGATACTTTTCTGCAGCGG GCATACATGGGTACACCCTCAATCCTCGCAGGAAGAGTCTTGCAGCACCT TTCTCACAACGAAGGCTAGCCCTGCCATTGGAAGGTAGGAGGCAACTAAA CGAAAACTCACGAGAAATGAAAGAAACAATATAAAAAATCCCGTTTTTGT CCGTCCTCCTGAGTAACACCAGTAGGTCCGTCGAAGCATGAGAGAAGAAA CGCCAAAACGTTCTGAAGACTGTCGCCAAAATAAAATGGTAGAACTAATA CGATTGGTTTTTAACGTCTTGCTTTCAATGGGAACAGGAAAGCAAATGTC GTCTGTCTGAATGGCAGGAAGTTGCTGGTTTTAAGTTATGAGGAGGGCCG TAGGACAGATGACGGAGGAAATAAGCTATTCACCGTACTTCGACGTTTCA AAGGTGGTAGGTGTAAGGTAGATGTTGTTCATCATCGAGAGTAAACGAAG TCACAACATAGAGTGGAAGTATTTGACTTTTTGATTTCTGTGTCTGCATG TGTTTCCAGGTATTATCGGAGGGCAAATGACAAGAAACACAGTAAAACGA CGCCACCAAATGGGCGTTTTTGGGGCAAAAATAGTCAGGAGTGCAGGAGA GTGTTCGGCATCACTACCGTCAGCGGGGGACGTAGTAGTGACAATAGCTT CTGCTTCGGAGCTGCTGTTGTCCTCAACGCCTTGATGGCCGCTGTCACAG CCTTCAAATGCCCGGCCCAACTAGCAGCTCCGAGCATACCACCAAACGTA CACGCGCGCAGCACCTCGCCAGAATAGGGCGGGTTTCACCTGTGTTTTTA GCATTTGGGAATGTCGGTTCCAGAATCCGCCAAGACTTCGGATTTGTTCT TGCGCACGCGTCTCGAGCGTGCCCAGCGACCAGACCCTGACGGTTGCGAG TGCTGGGGATGGGATATTCGTACTCACTTGGGGCTTACCTTGGTCGTTTG ACCGTTGACAACAAATCCCTGACGACACCGAGCAAGATGGATGAGTCGCG ATGCAAAGTTCTCGCGTGTTTTCCGTCCTAGTAAATTCTCATTTACCTCG GCAAAGCTGTCTGCCTTTCCTCCCTTCTCCGCCGTGTACCTCCCCCCTTC TCTCTCTTTCGAAAAACGGGAAAGCGTGCCTTTCAATTCGTTGTCCTGCC ACCGTTGTGTCTGCGCTGAAGAATCGATGAAAAGGCTCAACAGAGTTCGA CCACATGCCGAAGTGGAACAGGCCCGGGTGGACGAGGACATGCTTGAAGG GTCCCAAGAAGAAAATGTATTTTTTCTAATTCCCTCAAGACAGGGAAATA CTGGAACTGTCGACAAAAAACGCTTTCGAGTTTTCCACCCAAAGTGCTTC GTATCCTCTAAACAAAACGAGGGTCGGAGGGTCCGGCAAAACTGGCGTTC TTCTGTTTTTTTATTCCCCGAAGACGAGAGATCTTCCTGCCAGTCGGGCC GCGAAAAATCGCCTTTTCGTCATTTATTTTAATTCAGAGGATCATCGCAG GGTCGCGAAAAGCTGATATGTTTGTTTTTTTCCTATCTAATAAATGTTTC ATCAAGTCACTTGTCTTTCGTCGCCCTCGCCCGGTCACTCCGCCCGCCGC TTCTCCTCTTCTACCGTTGCGGCTCGATTCAACGCTTCCTTTATCACAAA GTCGTGTGCGCTTCGTTAGTTACAGTTTGTAGACTCACACGTCCAGGGCA ATGGCCACCCCCCTGGCGTTTCTTTTGAACTGTTTCTCCCTACGTATTTT CGGATGGGATGTGGATGAAGGCTTCTGCGCAGTGGCAGGAAGAAAGTCAT GCTTGGATGCACCGCCGCCGCTGTGGATGAGCATCAGCCAGAGCTGCGCT GCATGCAGAGAGCCCACGGCATCAAACCAAAACAAAACACTGTGGGAGTG GGAGGGGCGGTCTTCCAATTTTGTCCTAGGTGTCGCCGGTGTTTGTCGGC ATCTCGGCAGAATCACCGCAGGCGCGACAAATACATCGATATTTTATATT CTCAATAAATCCAAAAACATTATAGAACTGATATCTTTCTTCAGGTTTTG GCAGCGGGACTGTATGATGTACACCATTATATTGCGAAAGGTTTCACAAA GAATCGTGAATTTCCATGCTGCATTGTATTCTTTGAAACACGGGGAAGAA ATGCTTTGTGCCTGCGGACGCTGAAGCAAGGAAGCGGAGGGATCCTTTGC GTGTAGAAACAAAAAAAGAATCGGGCACACGCCTTCTTTGATTTCGGACC GATCTGCGTTCGTTAGTTCGGCCCCGTGTTTTTCCTTCGGTGTCGTCGTG CGCCGTCTTTTACCGAGAATCAGCACCTTTTCTGGAGCAATCGATACCGT TGGTTGATCGATTTCACCAAGCGGCGCCCTTTGTGACCATTTCCGGCGGC CGACTACATGTAGGACGTCGGATCTCGGGCGAACCCCCCCCGCCAAGTTG CTCCTGAAGGTCGATATCGGAGGCCGTTCAGTACGGATTGATTGAGTGCG AAGTTTCTCCTCGAAGAATTGATTCATTCATCATGGATTGATTGTCCCCC CCCCCGCGGCGTGCGCCTTGTTGCGACCTTGTCGGCCCACGATGACGACA GAGCTCGGGCAGAATCCTACCGATAAAGAGTTCTTCGAGGTGGTGAGCAC GGTGGACAGAGATATGAAGGGCTTCATAGGTGAGGGAGGGCGAGAGAGAG AGAGAGAGAGGAGCGTTTGCGAGTTCAATTTGTAGCACGCGGAACACGGG GTGATGGCACGTAATAATGGTGCGTGCTTCTGAACTTTCTGGTCGGTCGA GTGCCTGCGCGCGTGTCAACTGCCGCAGGTACTTCACCATGTACCCATGC CGCCTTCCTGTGTTCCGCTCTCATCTTGTGCTTTTTCATGTTTCGATTTT CGTCTTGCTCGGAACAGACTTCACCTCCTTCCTGAAGATCGTCGCCAGCC AGAAGGGCGCGAAGAGCGTCTGTACTGGCGACAGTGGTGACCTGGGTGAG CGCGGGTTGTGTCGGGACCAAAGTATAGGTGCAAAGAAAGGTGCTCACCC TGTACCTTCCCGGTATCCAGCGCCAGTACAACCAGCATCCAGCACAATCG GTACAGAACGGGCTCGCGCTTGAGAACATCCTCTTTTTGCGAGGCAGGGG TTCTCGTTTCCCCTCTTGGCTGTCAATTGCCTACCAATGTGTACTTTCAT ACAGAGGCTTTTTTCCAGGCATCTAAAATGAGTGACGGTGCTTTGAATTT GCTGAGGGTCATGTTCTCAGGTGCCTTGTTTCCAAGTGGTGAGCCGTTCT GTCGAGTGGGCAAGGGACACAGAGAAGGGAAGCCTTCAGTGTTACGCCGA CCCGGATCGGAGCTTCCTCCTACCCCCGGAAATGCTGTGATCGCTGGCGC ATTCAACAATGAGAAATTATCAGAACACTTGCGGTGGTTCAATTCAAATA ATTCGGATATCCTATCCGTGTATGCAGTGTTAAACACAAGCATTGTGATT CTCTCTTATTTTACACAATATGACGTACACTCATCCCCGGCGAAGGGACG ACGATCGTTTTTGCATTTTTCAAATGTCCAAAGTGCGGGCAATTGTCATC ATGATTCAAAAGGAAGATGAGACGAAATGCTCCCTGTTTCAGAATGGTAG TGGGGACGACTGGAAATAGCGGCGAAGCATCGGCACTTTAATTCAACATT TGATGATAGAACGTTGTGCGAAATATCACGGAGAAAACGTTTTATGCGCC TGCGGCGATCTGGCTGCAGTCGTCGCGGCCGTGGCGTTCGGCGGGAAGCC AGCCGCGACCGAGACGGCCGACGTGGGCTAGATCACCATGGCTTTCTCTC TCTCCAGTACTTTCTTGCCACGAAACGAATGGTTTTTTATTTTAATTTAT TTGTATTCTCTATGAACATCAAATTTATCTCCTTCGTTTATCTATTTCCG CTCGCGATTTCTGACTGCAGTCGACGCGTTCGTGGCGTGCGGCGGGAACG CGGACGAGACCGGGACGGCCGACGTGAACAAGATCGTCAAGATCGTCAAG ACGGACTTCGGCCTCGACGTGGACATCGAGGGCATCATCGAGACCCTCGA CGTCGACGGCGCCGGCCAGCTAGGGTTCGCGCAGTTCAAGGAGATGCTCA CGGCTTCGTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig63:686658..691868+

>mRNA_P-fluviatile_contig63.13014.1 ID=mRNA_P-fluviatile_contig63.13014.1|Name=mRNA_P-fluviatile_contig63.13014.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=912bp|location=Sequence derived from alignment at P-fluviatile_contig63:686658..691868+ (Porterinema fluviatile SAG_2381)
ATGTCTCTATCTCAGGAGGAAATCGACGGCTGCCAGGAGGCATTCCGAGA
GGTGGATGTTGGCAGGCGCGGTAACATCAACGTTTGGGAGCTGCGCGTCG
TTCTTCAGGATGTCTCTATCTCAGGAGGAAATCGACGGCTGCCAGGAGGC
ATTCCGAGAGGTGGATGTTGGCAGGCGCGGTAACATCAACGTTTGGGAGC
TGCGCGTCGTTCTTCAGGAGCTCGGGCAGAATCCTACCGATAAAGAGTTC
TTCGAGGTGGTGAGCACGGTGGACAGAGATATGAAGGGCTTCATAGAGCT
CGGGCAGAATCCTACCGATAAAGAGTTCTTCGAGGTGGTGAGCACGGTGG
ACAGAGATATGAAGGGCTTCATAGACTTCACCTCCTTCCTGAAGATCGTC
GCCAGCCAGAAGGGCGCGAAGAGCGTCTGTACTGGCGACAGTGGTGACCT
GGACTTCACCTCCTTCCTGAAGATCGTCGCCAGCCAGAAGGGCGCGAAGA
GCGTCTGTACTGGCGACAGTGGTGACCTGGTCGACGCGTTCGTGGCGTGC
GGCGGGAACGCGGACGAGACCGGGACGGCCGACGTGAACAAGATCGTCAA
GATCGTCAAGACGGACTTCGGCCTCGACGTGGACATCGAGGGCATCATCG
AGACCCTCGACGTCGACGGCGCCGGCCAGCTAGGGTTCGCGCAGTTCAAG
GAGATGCTCACGGCTTCGTGATCGACGCGTTCGTGGCGTGCGGCGGGAAC
GCGGACGAGACCGGGACGGCCGACGTGAACAAGATCGTCAAGATCGTCAA
GACGGACTTCGGCCTCGACGTGGACATCGAGGGCATCATCGAGACCCTCG
ACGTCGACGGCGCCGGCCAGCTAGGGTTCGCGCAGTTCAAGGAGATGCTC
ACGGCTTCGTGA
back to top