mRNA_P-fluviatile_contig63.12992.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig63.12992.1
Unique NamemRNA_P-fluviatile_contig63.12992.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig63.12992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig63contigP-fluviatile_contig63:449273..449686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.1135387-CDS-P-fluviatile_contig63:449272..4495781622817042.1135387-CDS-P-fluviatile_contig63:449272..449578Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 449273..449578 +
1693570922.649039-CDS-P-fluviatile_contig63:449272..4495781693570922.649039-CDS-P-fluviatile_contig63:449272..449578Porterinema fluviatile SAG_2381CDSP-fluviatile_contig63 449273..449578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.123924-UTR-P-fluviatile_contig63:449578..4496861622817042.123924-UTR-P-fluviatile_contig63:449578..449686Porterinema fluviatile SAG_2381UTRP-fluviatile_contig63 449579..449686 +
1693570922.6576276-UTR-P-fluviatile_contig63:449578..4496861693570922.6576276-UTR-P-fluviatile_contig63:449578..449686Porterinema fluviatile SAG_2381UTRP-fluviatile_contig63 449579..449686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig63.12992.1prot_P-fluviatile_contig63.12992.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig63 449273..449578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig63.12992.1

>prot_P-fluviatile_contig63.12992.1 ID=prot_P-fluviatile_contig63.12992.1|Name=mRNA_P-fluviatile_contig63.12992.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
GGSRCVNAGGGVPRKEKVSRVNATRRILNSPTQLFFPSRGQLTRPKRLTG
QAFKRGIEDEENEDDAFCSGGNGGNEGKIRLQTKRSDGPWVGASDWLHRW
I*
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mRNA from alignment at P-fluviatile_contig63:449273..449686+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig63.12992.1 ID=mRNA_P-fluviatile_contig63.12992.1|Name=mRNA_P-fluviatile_contig63.12992.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=414bp|location=Sequence derived from alignment at P-fluviatile_contig63:449273..449686+ (Porterinema fluviatile SAG_2381)
GGGGGGTCCCGCTGTGTCAACGCGGGGGGGGGCGTCCCGAGGAAAGAAAA
GGTGAGCAGGGTCAACGCAACTCGTAGGATATTAAATAGTCCGACGCAAT
TGTTCTTTCCGAGTAGAGGGCAGCTGACGAGGCCGAAGAGGTTGACGGGG
CAGGCGTTTAAGCGGGGAATAGAAGATGAAGAGAACGAGGACGATGCATT
TTGCTCCGGGGGGAACGGGGGGAACGAAGGCAAGATAAGATTGCAAACGA
AACGATCGGATGGGCCGTGGGTGGGGGCTAGCGACTGGCTTCACCGATGG
ATTTAGGGGAGGCCGTATTGCACAAGTTCAACCGCCATACCTCAGGCTTG
TGAGGCACTCGGCTGGACACGCGGTCGGCAAACATCCACCTCGAATGAAA
CCAGAACCAGAGCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig63:449273..449686+

>mRNA_P-fluviatile_contig63.12992.1 ID=mRNA_P-fluviatile_contig63.12992.1|Name=mRNA_P-fluviatile_contig63.12992.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig63:449273..449686+ (Porterinema fluviatile SAG_2381)
GGGGGGTCCCGCTGTGTCAACGCGGGGGGGGGCGTCCCGAGGAAAGAAAA
GGTGAGCAGGGTCAACGCAACTCGTAGGATATTAAATAGTCCGACGCAAT
TGTTCTTTCCGAGTAGAGGGCAGCTGACGAGGCCGAAGAGGTTGACGGGG
CAGGCGTTTAAGCGGGGAATAGAAGATGAAGAGAACGAGGACGATGCATT
TTGCTCCGGGGGGAACGGGGGGAACGAAGGCAAGATAAGATTGCAAACGA
AACGATCGGATGGGCCGTGGGTGGGGGCTAGCGACTGGCTTCACCGATGG
ATTTAGGGGGGGTCCCGCTGTGTCAACGCGGGGGGGGGCGTCCCGAGGAA
AGAAAAGGTGAGCAGGGTCAACGCAACTCGTAGGATATTAAATAGTCCGA
CGCAATTGTTCTTTCCGAGTAGAGGGCAGCTGACGAGGCCGAAGAGGTTG
ACGGGGCAGGCGTTTAAGCGGGGAATAGAAGATGAAGAGAACGAGGACGA
TGCATTTTGCTCCGGGGGGAACGGGGGGAACGAAGGCAAGATAAGATTGC
AAACGAAACGATCGGATGGGCCGTGGGTGGGGGCTAGCGACTGGCTTCAC
CGATGGATTTAG
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