mRNA_P-fluviatile_contig62.12943.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig62.12943.1
Unique NamemRNA_P-fluviatile_contig62.12943.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig62.12943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig62contigP-fluviatile_contig62:579630..580328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817033.9112327-UTR-P-fluviatile_contig62:579629..5799741622817033.9112327-UTR-P-fluviatile_contig62:579629..579974Porterinema fluviatile SAG_2381UTRP-fluviatile_contig62 579630..579974 +
1693570902.982451-UTR-P-fluviatile_contig62:579629..5799741693570902.982451-UTR-P-fluviatile_contig62:579629..579974Porterinema fluviatile SAG_2381UTRP-fluviatile_contig62 579630..579974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817033.9242787-CDS-P-fluviatile_contig62:579974..5803281622817033.9242787-CDS-P-fluviatile_contig62:579974..580328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 579975..580328 +
1693570902.9947863-CDS-P-fluviatile_contig62:579974..5803281693570902.9947863-CDS-P-fluviatile_contig62:579974..580328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 579975..580328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig62.12943.1prot_P-fluviatile_contig62.12943.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig62 579975..580328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig62.12943.1

>prot_P-fluviatile_contig62.12943.1 ID=prot_P-fluviatile_contig62.12943.1|Name=mRNA_P-fluviatile_contig62.12943.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=118bp
MNPHYSRCLRRSGSDRQRRPRSHWTISAGSRFQIASDSSQAPATLCRQQI
IASHSSHHPDMPPCVLRGQPNPTCCPQYPRCYVSLTHRTLPYPYDLLFET
AGPHIVAEALQKSCSCCS
back to top

mRNA from alignment at P-fluviatile_contig62:579630..580328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig62.12943.1 ID=mRNA_P-fluviatile_contig62.12943.1|Name=mRNA_P-fluviatile_contig62.12943.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=699bp|location=Sequence derived from alignment at P-fluviatile_contig62:579630..580328+ (Porterinema fluviatile SAG_2381)
GGTCTGCGTAGAATGTTGTCAAGTTGCGGTGTGCACAGCAGCAGCAGGAA
AATGGGGTGAAAGACTTCAGAGAAATAGCGGGGCGAAGGACTTAGAAGGG
TCGACGCACTCTTTGCCACCACAATTGCTGTCTCTTCGATCATCAGCACA
GCTGGTGAGCATGCAACAAATGGCGCACTGCTATTCGCTGATGAGCGATG
CGGGGTGTACTTCTCGAGCGGCGGACGCTCTCGCCGAGAGGCAGAAAGAA
GGGCCTTCAAAGCAGAATCAGGACAAACCTCGCAGTACGCAAACATCTCT
CATAATTCCCATCTCTCGCGACGTCTGTAGTCTCAGTACCGTGTAATGAA
TCCACACTACAGCCGCTGTCTTCGACGCTCAGGGAGTGACAGACAACGGC
GGCCTCGAAGTCACTGGACAATCTCTGCTGGCTCTCGATTTCAAATCGCA
TCTGATAGCAGTCAAGCTCCTGCAACATTGTGTCGCCAGCAGATCATCGC
GTCCCATTCATCGCATCATCCCGACATGCCCCCGTGTGTGCTGCGGGGGC
AACCAAATCCGACGTGTTGTCCGCAGTATCCACGCTGTTATGTTTCCCTT
ACCCACCGCACATTACCTTACCCGTACGACCTCCTCTTTGAGACAGCAGG
GCCACATATCGTAGCAGAAGCTCTACAGAAATCATGCTCCTGCTGCTCA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig62:579630..580328+

>mRNA_P-fluviatile_contig62.12943.1 ID=mRNA_P-fluviatile_contig62.12943.1|Name=mRNA_P-fluviatile_contig62.12943.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=708bp|location=Sequence derived from alignment at P-fluviatile_contig62:579630..580328+ (Porterinema fluviatile SAG_2381)
ATGAATCCACACTACAGCCGCTGTCTTCGACGCTCAGGGAGTGACAGACA
ACGGCGGCCTCGAAGTCACTGGACAATCTCTGCTGGCTCTCGATTTCAAA
TCGCATCTGATAGCAGTCAAGCTCCTGCAACATTGTGTCGCCAGCAGATC
ATCGCGTCCCATTCATCGCATCATCCCGACATGCCCCCGTGTGTGCTGCG
GGGGCAACCAAATCCGACGTGTTGTCCGCAGTATCCACGCTGTTATGTTT
CCCTTACCCACCGCACATTACCTTACCCGTACGACCTCCTCTTTGAGACA
GCAGGGCCACATATCGTAGCAGAAGCTCTACAGAAATCATGCTCCTGCTG
CTCAATGAATCCACACTACAGCCGCTGTCTTCGACGCTCAGGGAGTGACA
GACAACGGCGGCCTCGAAGTCACTGGACAATCTCTGCTGGCTCTCGATTT
CAAATCGCATCTGATAGCAGTCAAGCTCCTGCAACATTGTGTCGCCAGCA
GATCATCGCGTCCCATTCATCGCATCATCCCGACATGCCCCCGTGTGTGC
TGCGGGGGCAACCAAATCCGACGTGTTGTCCGCAGTATCCACGCTGTTAT
GTTTCCCTTACCCACCGCACATTACCTTACCCGTACGACCTCCTCTTTGA
GACAGCAGGGCCACATATCGTAGCAGAAGCTCTACAGAAATCATGCTCCT
GCTGCTCA
back to top