mRNA_P-fluviatile_contig62.12909.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig62.12909.1
Unique NamemRNA_P-fluviatile_contig62.12909.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig62.12909.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.490e-70
Identity = 204/217 (94.01%), Postives = 210/217 (96.77%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGNTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG*TALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADPMLSQYGSLPLNMAVYNGHLKAVRDLVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NA+P+LS YGSLPL MAVY+GHL+ VR+LVHWYGTDRCTSDGGALALATAASRKHVDIV FLC+AGV
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
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BLAST of mRNA_P-fluviatile_contig62.12909.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 5.050e-67
Identity = 178/217 (82.03%), Postives = 188/217 (86.64%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGNTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG*TALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADPMLSQYGSLPLNMAVYNGHLKAVRDLVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGS +  +ATTDIDRRCG+TN TPLMVASVIGSSRVV+DLLRQGASVSVADSDG TALHH+VYH+HLAVS               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NA+P+LS YGSLPL  AVYNGHLK V +LVHWYGTDRCT+DGG LALATAASRKHVDIVTFLCDAGV
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
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BLAST of mRNA_P-fluviatile_contig62.12909.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 5.720e-57
Identity = 192/218 (88.07%), Postives = 195/218 (89.45%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGNTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG*TALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADPMLSQYGSLPLN-MAVYNGHLKAVRDLVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCG+TNQTPLMVASVIG SRVVRDLLRQGASVSVADSDG TALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     LS YGSLPL  M          R+LV+WYG DRCTSDGGALAL TAASRKHVDIVTFL DAGV
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
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BLAST of mRNA_P-fluviatile_contig62.12909.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 6.610e-43
Identity = 140/209 (66.99%), Postives = 147/209 (70.33%), Query Frame = 1 
Query:   25 SGSADPTIATTDIDRRCGNTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG*TALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADPMLSQYGSLPLNMAVYNGHLKAVRDLVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 651
            SGS +  IATTDIDRRCG+TNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDG  ALHHAVYHKHLAVSK                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +P+LS                    +LV+WYGTD CTSDGGALALATAASR  VDIVTFLCDAGV
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
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BLAST of mRNA_P-fluviatile_contig62.12909.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 9.980e-37
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGNTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG*TALHHAVYHKHLAVSK 237
            MPSTLSKASGS DPTIATT IDR CG+TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHH+VYH HLAVSK
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSK 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig62.12909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE2.490e-7094.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE5.050e-6782.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE5.720e-5788.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE6.610e-4366.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI9.980e-3791.14EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig62contigP-fluviatile_contig62:113057..113707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D8LP44
KEGG koko:K10334
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817034.468389-CDS-P-fluviatile_contig62:113056..1133771622817034.468389-CDS-P-fluviatile_contig62:113056..113377Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 113057..113377 -
1693570903.323682-CDS-P-fluviatile_contig62:113056..1133771693570903.323682-CDS-P-fluviatile_contig62:113056..113377Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 113057..113377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817034.478671-UTR-P-fluviatile_contig62:113377..1137071622817034.478671-UTR-P-fluviatile_contig62:113377..113707Porterinema fluviatile SAG_2381UTRP-fluviatile_contig62 113378..113707 -
1693570903.3358479-UTR-P-fluviatile_contig62:113377..1137071693570903.3358479-UTR-P-fluviatile_contig62:113377..113707Porterinema fluviatile SAG_2381UTRP-fluviatile_contig62 113378..113707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig62.12909.1prot_P-fluviatile_contig62.12909.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig62 113057..113377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig62.12909.1

>prot_P-fluviatile_contig62.12909.1 ID=prot_P-fluviatile_contig62.12909.1|Name=mRNA_P-fluviatile_contig62.12909.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
MVVLIDAGANVDSRLDDGATPLFFAARDGWLEGVKILLRANADPMLSQYG
SLPLNMAVYNGHLKAVRDLVHWYGTDRCTSDGGALALATAASRKHVDIVT
FLCDAGV
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mRNA from alignment at P-fluviatile_contig62:113057..113707-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig62.12909.1 ID=mRNA_P-fluviatile_contig62.12909.1|Name=mRNA_P-fluviatile_contig62.12909.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=651bp|location=Sequence derived from alignment at P-fluviatile_contig62:113057..113707- (Porterinema fluviatile SAG_2381)
ATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGACGCTGTGGTAATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTCTGCGG
CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTAAACTGCTCTGCA
CCACGCGGTTTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCATAGATACACCACTTCAC
GTGGCCGCGACCAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACGC
AGGCGCGAATGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCT
TCGCGGCAAGGGACGGGTGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCG
AACGCTGATCCGATGCTGTCTCAGTACGGAAGTCTCCCGTTAAATATGGC
GGTTTACAATGGACACCTGAAAGCGGTCCGCGACCTTGTGCATTGGTACG
GAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig62:113057..113707-

>mRNA_P-fluviatile_contig62.12909.1 ID=mRNA_P-fluviatile_contig62.12909.1|Name=mRNA_P-fluviatile_contig62.12909.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig62:113057..113707- (Porterinema fluviatile SAG_2381)
ATGGTGGTGCTGATCGACGCAGGCGCGAATGTGGACAGCAGGCTCGACGA
CGGAGCAACACCGCTGTTCTTCGCGGCAAGGGACGGGTGGCTGGAAGGGG
TGAAAATTCTCCTTCGGGCGAACGCTGATCCGATGCTGTCTCAGTACGGA
AGTCTCCCGTTAAATATGGCGGTTTACAATGGACACCTGAAAGCGGTCCG
CGACCTTGTGCATTGGTACGGAACCGACCGCTGTACAAGCGACGGCGGCG
CACTGGCTCTCGCAACGGCCGCTTCTCGCAAACACGTGGACATCGTCACC
TTCCTGTGCGATGCCGGTGTGATGGTGGTGCTGATCGACGCAGGCGCGAA
TGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCTTCGCGGCAA
GGGACGGGTGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCGAACGCTGAT
CCGATGCTGTCTCAGTACGGAAGTCTCCCGTTAAATATGGCGGTTTACAA
TGGACACCTGAAAGCGGTCCGCGACCTTGTGCATTGGTACGGAACCGACC
GCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCCGCTTCTCGC
AAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGTG
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