mRNA_P-fluviatile_contig62.12902.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig62.12902.1
Unique NamemRNA_P-fluviatile_contig62.12902.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig62.12902.1 vs. uniprot
Match: A0A6H5K2J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 6.540e-8
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 GVETEGTRGESLREWVKEREWFGVLVQK-----PINASSAF-PWSGRYR 129
            GVETEG RGES+REWVKEREW GV++QK     P  A +AF P  G +R
Sbjct:   24 GVETEGARGESVREWVKEREWCGVVLQKGGARRPEGAEAAFTPDVGHFR 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig62.12902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2J4_9PHAE6.540e-861.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig62contigP-fluviatile_contig62:28309..33898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size219
Cds size219
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig62.12902.1prot_P-fluviatile_contig62.12902.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig62 28309..33898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.7883537-CDS-P-fluviatile_contig62:28308..283901622817032.7883537-CDS-P-fluviatile_contig62:28308..28390Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 28309..28390 -
1693570901.8151653-CDS-P-fluviatile_contig62:28308..283901693570901.8151653-CDS-P-fluviatile_contig62:28308..28390Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 28309..28390 -
1622817032.80297-CDS-P-fluviatile_contig62:29219..292721622817032.80297-CDS-P-fluviatile_contig62:29219..29272Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 29220..29272 -
1693570901.8243988-CDS-P-fluviatile_contig62:29219..292721693570901.8243988-CDS-P-fluviatile_contig62:29219..29272Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 29220..29272 -
1622817032.819352-CDS-P-fluviatile_contig62:33814..338981622817032.819352-CDS-P-fluviatile_contig62:33814..33898Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 33815..33898 -
1693570901.8342571-CDS-P-fluviatile_contig62:33814..338981693570901.8342571-CDS-P-fluviatile_contig62:33814..33898Porterinema fluviatile SAG_2381CDSP-fluviatile_contig62 33815..33898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig62.12902.1

>prot_P-fluviatile_contig62.12902.1 ID=prot_P-fluviatile_contig62.12902.1|Name=mRNA_P-fluviatile_contig62.12902.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=73bp
GVETEGTRGESLREWVKEREWFGVLVQKPINASSAFPWSGRYRDWRRRPS
ATSSSSDDDDDESGDGAIAVAVK
back to top

mRNA from alignment at P-fluviatile_contig62:28309..33898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig62.12902.1 ID=mRNA_P-fluviatile_contig62.12902.1|Name=mRNA_P-fluviatile_contig62.12902.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5590bp|location=Sequence derived from alignment at P-fluviatile_contig62:28309..33898- (Porterinema fluviatile SAG_2381)
GGGGTGGAGACAGAGGGCACGAGAGGAGAAAGCTTGCGCGAGTGGGTGAA
GGAGCGAGAGTGGTTTGGAGTACTGGTGCAGAAGGTGAGAATCATCCGGG
AGGCGTCTTGCCACACATCGCAACAATTGAAACCTGGAGGGACCAGAGAG
AGCAAACTGCGTCTGTTTCTTGTTTATTTGTTGCGCCTGCACAGGCGCTG
GTCGACATTCCAGTCTTTCGGAATGGAAGGGGGAGGGAGGGTCAAACAGC
TACGAGTGTTGAGTACGTTTGTCGTACTTGTAGAACGAGCCCAGAACCTC
TTTCATGTTCATTTCGGCAAAAAGCTAGGCTGGAACAGGCGACTGTTTGT
CCGACGACTTGTCGCACGATTTGTCGCTTGTACGCAAGGAGCACCGATGT
TGCTCTCCTTCTTCAAGATAGCTTTTAATGTACTGGAGAGGGAGAGGGAG
GGAGCAAAGTCCGAATAGCCATGATATGTCCGACGGTGTGTCGCGCGCTC
AAGGAGCACCGATCCTTCTGTCGCTCTTCAAACCAACATTTTTAAAATCG
GGGAGAGGGAGAGAACAGGATTCGAATAGCTGCGATTAGTGCGACAATGT
GGCGCGTGCGTAAGAAGCACCGATCCCGCTCTCCTCTACCAAACCAGCTT
TTCATATGTAGATCCGCGAAAAAGAGCGTGCAAAGTTCGAACGGCCATGA
TGTGTGCGACGCTCGGTCGGGCGCCCAAGGAGCGCCGATGCTCCGTCCGT
TCCACATTCCAGCAATTTTCAAATCTGCGAGAGGCAGAAACCAAAGTTCC
AATAGCCATGATGTGTCAAACGGTTTGTCGCGCGCGAGAGGAGCACAGAT
CCTGCTCTCGTTCTCCAAACCAGCTTTTATTTTTCAGGGAGAGAGCAAAG
TTCGAACACTATGGCATCCCAGGCTTGGTCGCGCGGGTAAGGATCGCCGA
TCGTGCTCTCGTTCCACCAACCAGCTGTATAACATCGGGGAGACGGAGAG
AGCAAAGCGAAAAGTTATGATGTGTCCTCTCGTTTGCCAAACCTGCTTTT
TGCAAGTCAAGAGAGGAAGAGCGTAGTTCAAACAGCCGTGATGAGCCGAC
GATTTATCGCGCCCGCAAGAAGCACCGACCCCTCGCTCGTTTTCCAACCA
TGCGAGGGCAGTTCAAACAGCCATGATTGATGTGTGTTCCGTCGCTTTGC
CGCGCGAACAAGTAGCATCCCACTCAGTTTGTTCTTGATACCAGCATTTT
TTGCAATTGGGGAGAGCATGAAGGCAAAAGTTCGAGCAGCCATGATGTTT
CGGAGGATTGTCGCGCGCGCAAGAAGCACCGATCCTACTCTAGTTCTTCA
TAGCAGCTTTTTGTAGGTCAGGGAGAGGGAGAGAGCACAGTTCAAATAAC
CATGCTGTGTCCCACGCTTGGTCGTACACCCGAAACACACCGATCCCTCT
CTCGTTCCACGCACCAGCGATTTTCAAATTCAGGAAAGGCCGAGAGCAAA
GTCCGAATACCCATGATGTGTCCCACGCTTTGTGGCGCTCGATCTTTCCC
TTGTTCCACAACCCAGCTTTTTGTAGTCGGGGAGGGCCAAAGTGCAAAGT
TTGAGCATCCATGGTGTGTCCGACGCTTGGTCGCGCACGCAAGAGGCACC
GATCTTGTCTTCTTCAAACCAGCTGTTCATATGTCAGAGAGGGAGAGAGC
AACTTTCGAACACCATGACACAAAGGAGCACCGATACTCCGTTCGTTCCA
CAAACCACCAATTTTCAAATCTAAGAACAGGCAAAAACCAAAGTTCACCT
AGCCATCATGTTTCAAACGGTTTATCTCGCACGCGAGGAGCATCGATGTG
AATTTTTCAAATCGGGGACAGGGAGAGAGCAGAGTCCGAGCAGCCATGAT
GTGCTAGACGCTTGGTCGCGCGCGCAAGGAAGCACCGACCCTCTGTTCCA
CAACAGCTTCTTATACAACGATCGAAACAGCCATGATATGTCCGACGGTG
TGTTGCGCACGCGAGGAACACCAATCTCGCTCTCGTTCCACAAACCAGCA
ATTATTGAATCGGGGAGAGGGAGAGAGCAACGTTCGCAAAGCTAAAATGT
GTCCGACAAGTGTCGCGTGCGCAAGGAGCACAGGTCCTCCGTTCGTGTTT
CAATCGGTCAGAGGGAGAGAGGGAAGTGCGAATAGATCGGAGCGAGCCTC
GCCGATTTATCCCCATTTAGAAGAGTGCTGATAACGAAACATTCCACGTT
CCGTCCCGGTTTCGACCGTGGGCGGTTTTCTCGATTCTGGAGACGATTCG
TACGCCGACGGATGGCTCCAAAGGAAGCCATGTGCACGTATAACAACGTG
CTTATGTGCTGCGTTGTTTAATTGATAGACAAATGGTTTCGTGCTTGCCC
GCGTGGCACCATCTATGCCAGTGTCGACAAAAATCCGAAGCAAGAAGCAG
ATCAAGTCTGAGCTACCCACGGATCGCCTGCCCGGCCTGGCTACCTAGCC
CAACACCCACGAATGCTCAAATCTGCGCAATGGATGTTTCATCCCCATGC
ACTGACGCTTGACACTGAGGGGTAGCAACGCCGTGCCCTGGATCTACGTG
TGACTTATGTTCGCGGGACAAAGAGCTGGCTGCTTGAAAGATGGCTTGGT
CTCGATCTCCTCCACGCGTTGATCGGGCTCCTGTTGTTGTGCTCGAGGCT
TCTGCTGTTGTTCCGGTGGCGGCTGCCGGTGCCTTCGCTTGCGCTCTTTG
TCAGCACTAGAAGCTCGCACTCTCTCGAGCTCGATATGTTGAAAAAACCG
ACACTGTTGTCACGTACTGGTGCTGATTATAGTGCTGATTATTGTGCTTG
TACACACGCGTTCCAACTCCGTACGTTGTGTTTGAACAATCACAACAAGA
TCCTTGTAGACTGGCGCTCTTTTTCCGCAGGCCGCTCGAGTACCTCTGAC
AAATCCATGGGATCGAACCCTTCCTTTTCCTCTAAGAATTGAAACACCCC
ACAAACCCCTGTATCGATGTCGCACAGAGCATGCCCGGTAAACAGCGAAA
CACCCTAGAAAAACGCGGAGTACTCCGCCGTGCGAAACTCTTCTCTGGGT
TCCATCTTATCCGGGAGGTACCCGAGGAAAGCTCCATCGTGCTTGTTGTT
GTACCTGTCGAAAAGTTATGGGGGCGGGTAAAAGCATCAGCCAACTTATA
TCAAATTCTTTATTGGCCGCAACACACGCCCGAATAGTTCACCAACACCA
CGCACCTAGACAGGGCCGCCAAGAGCACCCGGGGCTTCGCCGCCCTCTTC
TTCAGAAGCGGGAGCATGCGAGCGATCGATGTTGATTTCTTCCGGGACGC
ACGCTCTGTAGAACCACCGGTGTCGATTGGCCACAGCCTAGAGACCGCGT
GAACTGCCTCCTCCTGTCGCAGCAGGCGGATGACACCCTTCAGTCCCCGC
ACCATCTCGCGGTGGACTTTCATTGACTGAATCTGCGAAAATACGATGTA
GCCAAGTCCAGGGGCGTGCCGATGAACCCTTCGTCTTCTTCCCCCTCATC
ACTGTCGCACGGAAACCGAACGCCCGATGTCGCGTCCGCCCCGGCTTCGA
GTAGCAAGCGCGCGAATCTGGGAGCATGAAAGCTTCCCAGGTTGAAGGTG
CTCACAAGGGGAGTTTCTTGGAACACGAATTCGTCGTAGGTTTCCGGGAG
AGTACCGTGGTCCATATTGACGTAGGCGCGCGTACCTGTGTTGGCATTTC
CCCCCTGTCTCCCCAGCAGAAGGTTGACGCACGCCTCGCTACATCCCTCC
ATGGCGGCACACAGGGCCACGCCCTCCGTATCAACCACACCGGCATCGCA
CAGGAAGGTGACGATGTCCACGTGTTTGCGAGAAGCGGCCGTTGCGAGAG
CCAGTGCGCCGCCGTCGCTTGTACAGCGGTCGGTTCCGTACCAATGCACA
AGGTCGCGGACCGCTTTCAGGTGTCCATTGTAAACCGCCATATTTAACGG
GAGACTTCCGTACTGAGACAGCATCGGATCAGCGTTCGCCCGAAGGAGAA
TTTTCACCCTTCCAGCCACCCGTCCCTTGCCGCGAAGAACAGCGGTGTTG
CTCCGTCGTCGAGCCTGCTGTCCACATTCGCGCCTGCGTCGATCAGCACC
ACCATTCCTTGGCAAAACCCTTTGGTCGCGGCCACGTGAAGTGGTGTATC
TATGCCACCAGGCCTCGCTTCAAGGTCCGCTCCCGCCTCGATCAGGTCTT
TGCTCACGGCCAGGTGTTTGTGATAAACCGCGTGGTGCAGAGCAGTATAA
CCGTCGCTGTCCGCTACCGAGACGCTGGCACCCTGCCGCAGAAGGTCTCT
GACGACGCGCGAGGAACCAATGACGGAGGCCACCATCAGCGGTGTCTGGT
TCGTATCACCACAGCCTCGGTCGATGTCGGTCGTAGCAATGGTAGGATCG
GCGGAACCGCTGGCTTTGCTCAGAGTCGATGGCATGTTGGGGGAGAGTGT
TGTGTTTGAATGCACAAAGTTCTAGGCAAACAAAGTTTTTGGGAAACAAA
TGCTCCAAGCGTTGACAAATGGTTTTGACACCAACGTGCTTCTTTGTCTG
AATTGTTCTGTACACAATGGGAAAAGCCAATCAACGCCTCCTCCGCCTTC
CCGTGGTCGGGGCGATATCGAGATTGGAGGTGAGCCCGGCCAGAGCCCGA
GGCTTCTTGTTGGCTCCATCTTAGTCTTCGTTTATTTAGCCGAGACAACA
GCCTTGACTGCAGATTTAACCTTCGTCTTGGCATTGGTCTCTTGCGTTTT
CAGGGCGTCCGCCTTGCGTTTGGCGGACACCGCGACCTTTGACTTTTTTG
CTGCCACTGACTGAGCTGTTTTTGCTTTTTTGGTGACCACGGTCGAAGAA
GACGATGCCTTGCGCTTTGTGCCCCTCGCTGACTTGGCTTTCGTCGCCTT
GGCTTTGGCCGCATCAGCTTCCTTCTTCAGCCTTCTTGCCCGTGTAGCTG
CTTTCATGTGGGGGTCGCAACCTTTTGCGCGTGGGGCAAAGTCGACGCCA
GCCAGCCTTTTAAAGGCCTTTTCTTTGGCAGTCAGGGCCGCTGCCGGCTT
TTTCGCTCCCAGTAGCGCGAGCGTGTTGTTCAGGATTTTGGTCATACTGC
TCTTCACCTTTTCTTGCTGCCGAAAAACTTCCATGTGTTTGTACAAGTGG
GAGCAGATGACTTGTCTGTACACTTCTTTGGTTCGTTTCATCGTTGCATT
TCTGCCTACTATCCTGATCAACCTTTCCAGCAGATCCTTTTTGTATGTGA
CTTCGAAGCTTTTCCAATGGAGTGGAATCGGTCGTTGCTCGTGCGGAGAA
AAACGAGCCACGGGTAAGGTGTGAGGCACCTTTTCTTGTCCATTGTATTG
TAGCACTTGACCTTTCCCATACACGCCACCACTTTTCCCTCCATTATGCT
ACGGAATATAACAAAATGTTTTGTGCCGCGTCCTTGAACCAAAATCCACT
TGAAAAAGGAGGCGCCCATCCGCTACGTCTTCCAGCTCCGACGACGACGA
CGACGAGAGCGGAGACGGCGCGATCGCGGTCGCCGTCAAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig62:28309..33898-

>mRNA_P-fluviatile_contig62.12902.1 ID=mRNA_P-fluviatile_contig62.12902.1|Name=mRNA_P-fluviatile_contig62.12902.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=438bp|location=Sequence derived from alignment at P-fluviatile_contig62:28309..33898- (Porterinema fluviatile SAG_2381)
GGGGTGGAGACAGAGGGCACGAGAGGAGAAAGCTTGCGCGAGTGGGTGAA
GGAGCGAGAGTGGTTTGGAGTACTGGTGCAGAAGGGGGTGGAGACAGAGG
GCACGAGAGGAGAAAGCTTGCGCGAGTGGGTGAAGGAGCGAGAGTGGTTT
GGAGTACTGGTGCAGAAGCCAATCAACGCCTCCTCCGCCTTCCCGTGGTC
GGGGCGATATCGAGATTGGAGCCAATCAACGCCTCCTCCGCCTTCCCGTG
GTCGGGGCGATATCGAGATTGGAGGAGGCGCCCATCCGCTACGTCTTCCA
GCTCCGACGACGACGACGACGAGAGCGGAGACGGCGCGATCGCGGTCGCC
GTCAAGGAGGCGCCCATCCGCTACGTCTTCCAGCTCCGACGACGACGACG
ACGAGAGCGGAGACGGCGCGATCGCGGTCGCCGTCAAG
back to top