mRNA_P-fluviatile_contig61.12890.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig61.12890.1
Unique NamemRNA_P-fluviatile_contig61.12890.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig61.12890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig61contigP-fluviatile_contig61:805525..806165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size641
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig61.12890.1prot_P-fluviatile_contig61.12890.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig61 805596..806063 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817023.2998805-UTR-P-fluviatile_contig61:805524..8055951622817023.2998805-UTR-P-fluviatile_contig61:805524..805595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig61 805525..805595 +
1693570857.5320122-UTR-P-fluviatile_contig61:805524..8055951693570857.5320122-UTR-P-fluviatile_contig61:805524..805595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig61 805525..805595 +
1622817023.323944-UTR-P-fluviatile_contig61:806063..8061651622817023.323944-UTR-P-fluviatile_contig61:806063..806165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig61 806064..806165 +
1693570857.5614219-UTR-P-fluviatile_contig61:806063..8061651693570857.5614219-UTR-P-fluviatile_contig61:806063..806165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig61 806064..806165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817023.313032-CDS-P-fluviatile_contig61:805595..8060631622817023.313032-CDS-P-fluviatile_contig61:805595..806063Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 805596..806063 +
1693570857.5466537-CDS-P-fluviatile_contig61:805595..8060631693570857.5466537-CDS-P-fluviatile_contig61:805595..806063Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 805596..806063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig61.12890.1

>prot_P-fluviatile_contig61.12890.1 ID=prot_P-fluviatile_contig61.12890.1|Name=mRNA_P-fluviatile_contig61.12890.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=156bp
MPSNCVEESAIRLISFKMQPVETVSAYALRFQSELTRFGSSVKRISPNRS
PHQALSVILFQNGLPPAIRSPYMSERPAQTIREAVDRARRHEAANLMGNN
PNPTVSAMSFTHVPNRTAIAEQFTSTQPRRQSRPVRSGPGSGPSGGQPHV
PTDKG*
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mRNA from alignment at P-fluviatile_contig61:805525..806165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig61.12890.1 ID=mRNA_P-fluviatile_contig61.12890.1|Name=mRNA_P-fluviatile_contig61.12890.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=641bp|location=Sequence derived from alignment at P-fluviatile_contig61:805525..806165+ (Porterinema fluviatile SAG_2381)
CAGATTTGGCGAATTCTTTCACCCCGCCAAGTAACTGGTCTGAGCTCAAA
ACGGCTCTTCTAGACTGCCTCATGCCCTCTAACTGTGTAGAGGAGAGCGC
GATCCGTCTGATCTCGTTTAAAATGCAGCCCGTCGAAACAGTGAGCGCGT
ACGCTCTCCGTTTCCAGTCTGAACTCACCCGGTTCGGAAGTTCAGTCAAA
CGAATTAGTCCGAACCGCTCCCCCCACCAGGCCTTGTCCGTCATTCTGTT
TCAAAATGGTTTGCCGCCTGCGATCAGGAGCCCTTACATGTCCGAAAGGC
CTGCTCAAACAATCCGTGAAGCTGTCGATCGTGCCCGCCGTCACGAGGCC
GCAAACCTCATGGGCAACAACCCAAACCCTACTGTCAGCGCAATGTCATT
CACTCACGTCCCAAACCGCACCGCCATCGCCGAACAGTTCACGTCAACGC
AGCCGCGGCGGCAGTCCCGCCCCGTCAGGAGCGGCCCCGGTAGCGGTCCA
AGCGGTGGTCAGCCGCACGTCCCCACCGACAAGGGATAACGTCCTGCCCG
CAGCTATGGGAAGCAGCGGGAGCGACCGCAATGCACGCACCCTACGTGCA
AACAGTGACTCGGCCATACGGTCGACACCTGTTTTACGCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig61:805525..806165+

>mRNA_P-fluviatile_contig61.12890.1 ID=mRNA_P-fluviatile_contig61.12890.1|Name=mRNA_P-fluviatile_contig61.12890.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=936bp|location=Sequence derived from alignment at P-fluviatile_contig61:805525..806165+ (Porterinema fluviatile SAG_2381)
ATGCCCTCTAACTGTGTAGAGGAGAGCGCGATCCGTCTGATCTCGTTTAA
AATGCAGCCCGTCGAAACAGTGAGCGCGTACGCTCTCCGTTTCCAGTCTG
AACTCACCCGGTTCGGAAGTTCAGTCAAACGAATTAGTCCGAACCGCTCC
CCCCACCAGGCCTTGTCCGTCATTCTGTTTCAAAATGGTTTGCCGCCTGC
GATCAGGAGCCCTTACATGTCCGAAAGGCCTGCTCAAACAATCCGTGAAG
CTGTCGATCGTGCCCGCCGTCACGAGGCCGCAAACCTCATGGGCAACAAC
CCAAACCCTACTGTCAGCGCAATGTCATTCACTCACGTCCCAAACCGCAC
CGCCATCGCCGAACAGTTCACGTCAACGCAGCCGCGGCGGCAGTCCCGCC
CCGTCAGGAGCGGCCCCGGTAGCGGTCCAAGCGGTGGTCAGCCGCACGTC
CCCACCGACAAGGGATAAATGCCCTCTAACTGTGTAGAGGAGAGCGCGAT
CCGTCTGATCTCGTTTAAAATGCAGCCCGTCGAAACAGTGAGCGCGTACG
CTCTCCGTTTCCAGTCTGAACTCACCCGGTTCGGAAGTTCAGTCAAACGA
ATTAGTCCGAACCGCTCCCCCCACCAGGCCTTGTCCGTCATTCTGTTTCA
AAATGGTTTGCCGCCTGCGATCAGGAGCCCTTACATGTCCGAAAGGCCTG
CTCAAACAATCCGTGAAGCTGTCGATCGTGCCCGCCGTCACGAGGCCGCA
AACCTCATGGGCAACAACCCAAACCCTACTGTCAGCGCAATGTCATTCAC
TCACGTCCCAAACCGCACCGCCATCGCCGAACAGTTCACGTCAACGCAGC
CGCGGCGGCAGTCCCGCCCCGTCAGGAGCGGCCCCGGTAGCGGTCCAAGC
GGTGGTCAGCCGCACGTCCCCACCGACAAGGGATAA
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