mRNA_P-fluviatile_contig61.12876.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig61.12876.1
Unique NamemRNA_P-fluviatile_contig61.12876.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig61.12876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig61contigP-fluviatile_contig61:696403..701109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size398
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig61.12876.1prot_P-fluviatile_contig61.12876.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig61 696404..701109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817022.8590877-CDS-P-fluviatile_contig61:696403..6964431622817022.8590877-CDS-P-fluviatile_contig61:696403..696443Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 696404..696443 -
1693570854.6506066-CDS-P-fluviatile_contig61:696403..6964431693570854.6506066-CDS-P-fluviatile_contig61:696403..696443Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 696404..696443 -
1622817022.870183-CDS-P-fluviatile_contig61:697109..6972131622817022.870183-CDS-P-fluviatile_contig61:697109..697213Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 697110..697213 -
1693570854.6630695-CDS-P-fluviatile_contig61:697109..6972131693570854.6630695-CDS-P-fluviatile_contig61:697109..697213Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 697110..697213 -
1622817022.880547-CDS-P-fluviatile_contig61:697956..6980771622817022.880547-CDS-P-fluviatile_contig61:697956..698077Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 697957..698077 -
1693570854.6720238-CDS-P-fluviatile_contig61:697956..6980771693570854.6720238-CDS-P-fluviatile_contig61:697956..698077Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 697957..698077 -
1622817022.8908188-CDS-P-fluviatile_contig61:700978..7011091622817022.8908188-CDS-P-fluviatile_contig61:700978..701109Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 700979..701109 -
1693570854.6838043-CDS-P-fluviatile_contig61:700978..7011091693570854.6838043-CDS-P-fluviatile_contig61:700978..701109Porterinema fluviatile SAG_2381CDSP-fluviatile_contig61 700979..701109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig61.12876.1

>prot_P-fluviatile_contig61.12876.1 ID=prot_P-fluviatile_contig61.12876.1|Name=mRNA_P-fluviatile_contig61.12876.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=132bp
ATFSLSLAFWSPYPPEPNQSGEQGRATPDHLKGHGGIRTQPPSRSSDKAT
STRMSKGRDQHRSTPAPSYSSMLATRRTEAASAESLRPKSGSALLPARGE
SVEIANLRPLEAPNGSSSRVSARARAASITRG
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mRNA from alignment at P-fluviatile_contig61:696403..701109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig61.12876.1 ID=mRNA_P-fluviatile_contig61.12876.1|Name=mRNA_P-fluviatile_contig61.12876.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4707bp|location=Sequence derived from alignment at P-fluviatile_contig61:696403..701109- (Porterinema fluviatile SAG_2381)
GCTACTTTTTCTCTCTCGTTGGCTTTCTGGTCGCCTTATCCGCCCGAGCC
GAACCAGAGCGGCGAACAAGGCCGGGCGACCCCAGACCACCTCAAGGGCC
ACGGGGGGATCCGCACGCAACCACCGAGCAGGTTCGCTTTCGCCCTCGGC
CTGCTCGAAGGGCGTGAAATCGCCTTGAAAACCATGCGCTTTTCCTTCAA
CCTCTTTTCTCGGCGGCATGTGTATGTGTGAATGTTGTGCATCAAGAAGC
AAGAAACCATCTTGATGGGCATTAATTACAGGAGCCAGCCATCCATCGGC
CGCCGCCGAGATTTTTCCATGCACACACCACCAGAGTTCTCCCAACATCA
CGTGCCTCACGTGGGCACAAGGCAATACTGTTGGAATGTTGAGAACCGCA
ATAACAGGATTCAACATGCATTGGTTGAGAGGAGTGAAGGAACGTTCCAA
CGAAGTCGTCGATTTTTCATGGAGAACATCGATTGTGCAGCTACACACAC
ACACCTGCTGGAATCACTCGTGATGCCAATGTTTGTCACCCAACACGGCA
TGGAGAAGAGCAAGTGCAGTGTGCCAACCTCCCATGTCCTCTGGTGTGGT
TGTGAAAAGCATCATGATGGCGTGCCCCGCTGAATTTGTATGGCTATCCC
CCACGTTTCCGGAGAAAGCGCGCACGGCTCGGCAACACACACAATCGAGT
ACCTTTTTTTTTTTTTTTTCCGTAGTAATGGATTTGGCTACCGTCCTCGG
TGTTTGTTTGCGATGTTTTATTCGCCTCGATGTCTCGCGAGTAGTCTAAA
TCGCCTGCAATTAATAATGACGTCCTACAGCTTCATTCCTTCATTCAAAG
TAAGTGGCGAAAGAAGGCGTATCAAATGAAAATGAAGCAAACAGCTTTCT
CTGCACAGGCGTGATCTTAAAAATGGCCGGGGAATTTACGCCAATCGTGG
CGACGAGGACGGGGTGGACCTGTGTCGAAAGCGCTCGCCAGAGGATCGCG
TTGAAAAAATCGCTGGCTTCGCTGACGCTTGGATCTGAGTCGATCAACCC
GCAGTGAATGGTTTCAAAGCGAAAGCACGAAGAGTACGGTAAATATTGAG
ATGCGCCCACCACCTCACGCGCTTGCGTGGCACTCGACGCGATTTGTTGC
GATTTTCACGGGCGATTCCCCCTCCCCAACGTGTTGAAACGACCCCCGGA
CGCCGCCAAGGAACGGGCAAGATTTCGCAGACAACGCGGCCGTGCAGACG
ATCCTTGAAAATCGGAAACCACTTATCAGTACTTTGCACTATTCGTTTGC
TTCCGGGTCGAGTTCCCCCCTTTCAACGTGTTCGAAACGCCTCTTAACAT
TCCAACCACCACGAAAACGACGGCCAAGGAACGGGCGAGAATATCGCCGA
CAACGCTGCGCAGATGATCCTTGAAAATCGGAAGCCATATCACTCCGGAG
AATCGTTTTTTGTGCAGGCCAGGATAATATGTCTTGTCCTTGAAATACGT
ACGTGTACATGCATAGAACCTCAAGAACCCCGAGGAGGGCTCCCACTCTC
GAACCTCGCTAAGTCCAAGCTGACCCGGTACAGCTTGACCCTCGTTGCGC
ATTACAACGGAAATAATAACCCGTCCCACGTGGTGAATGATAGCCACGCG
TAGCTTGAGATCCCTCTCTCCGCTCACAGAGTGCGGGGGCATCTATCTAA
ACTGACGTCGACTGACAGATAAATACGGGACGATTCCCCTCTTTCGAGAA
CGAGTTCAAATATCCCAATGTTCCAACAACCACAAGGATGACGCCAAGAA
ACGGGCAACATCTTCGCAGTCAACGCCACCGTGCAGACGATCCTTGAAAA
TGGAAAGCGATGGATATGCCTTCGAAAAATATCTTCACTGGTTGGTGTCT
AATTTGCGCACTTGGTGCACCTTGAAATGTGGTTGATGCACGGGTTCGCG
CATTTTTTGGAACGTATGCTGTGGCATGAACGTGTAGCGCAATTTTCGGC
CGACTTTTGCTCCATTTTCACAACTTGACGGAAAGAGTAGCATCTTGCTC
AACTGGGCTAAGCAGGCACCATCATCACGGGATTCATCTCGAGCATCACG
CAAACCCTCAGTATATCTCACGAACGATGCCCACTTGAAGGCTGCTGGGA
TGGTCGAAACAAGCGGACTTGAGACCTAGAGTGGTGCACCACATCCTCCT
TGACACCGGTTCCGATTTCATGACGGTTTTGGAAAGGTTTCGATTCATCC
ATTCGTTCTGGAAGAGAGAAAATCGGGCCGGACCGCGGTTTTGCGCATCG
CATGCATGATCGGTACAACCGCGGTGTAGCATGCTCTTTCATCGGGAATG
CAGCAAGCTGTTGAAACGAAACAGCGGACGCAGGCTGACCGATTGGAATA
TCTACCGTAGGTCGTATGAGATACCACACCCCCTAGGTCGAAATTTCAGA
GCTCAAGATCTCGACGGCGAGGGGTTGGCCAATACCGAGCGATGCGTCAC
TATCAAGCTCCCGTTGGCATCTTTCGAAGGCCACTCCGTTTCATGCAGCT
ACCTCTGTTGCCGCGGAGAAATCGAGCGCTGAAAATGGGTCCCGGGGTGT
GATATCTTGTGCGACCTACGGCAGCCGGATTGTGGAGCGAAACGTCGAGT
TTTCGAGGCGAGATAAAAAAATCAGCACCAAACCGCAACAACTCAATGAA
TTTGACGGCTGGGCAACTCCATGCGTGGTGCAGGTGTCGTGGCACGGGTT
TGTTCACCCTCGACGACAAGCAAAGCATCATACAAGCGCATTTGATCAGG
GCGAACGAGACCAGTTTACGATATTCTCGTCTCTCAAGAAAGGGTCTTCT
GCGATTGCCAAAGGTACAAGGCCGTTCTTCGCCTCCCCACGGTCTCCAGG
AAACCAATCGGGGGCGAAAGGATTTTCTCTGACTCGAGGCTGTATCAACG
AGTCGCCCCTGCGGTATCGTGTACGTGTGCGCACGCGTAAGGCACCGGCT
ACCGTGTCTGTTTTGTCCACCCCTGGCTGCAGGTCTAGCGACAAGGCCAC
GAGCACCAGGATGTCCAAAGGTCGGGATCAGCACCGATCTACCCCCGCTC
CTTCGTACAGCAGCATGCTCGCGACGCGGCGCACCGAAGCGGCTTCGGCA
GAGGTGAGCGCGAGGTCGGAAGGAAGGAACGAAGAATGCAAGCAAACAGA
GAAATGATCGGATGCCTGATTGGTTGGAAATGCGGGCAGGCGCGCTTGAC
GACAACGAGTCGTCCAGAGGGAATCATAGACAAAGTACCTGAGGCCCGCC
GAGGCGCCTGTTGGTGGCGCATAGAGCGCGATGTTTGAGCGGGCGGTGAG
GCAGTCGGAAAAGGTTTCGAATGACCGAAGGTGAAATCAAGGAAAATAAA
ACGTGAAACCATGATTCTAGTTCGGGCGGAACATGGTGGCAGTTTGTGGT
GGGCGAGACGGTGTTACCAGAGTATTGTTATAGAGGAATGCGGTTTGTCG
GACGCCGTGACCGAAGTGCTTGGTCGTTCTGCGCTCGTTTCTGCCCTCTC
CCTCTCCGTGCATCCCTCACTGCCCCCACAACCAGGTGTTCGTTTCGTCT
ATGAAGCGTCGCTCCCTTAGCTCCCTATCGAACACGTTGCTCGGCCCGGT
CTTCTTGGTTGACTCTTCACAAGAGCGCACGTACTTTCGATCCCCGCCCC
GCCCCTCCCCGTGTCCCTCCCCCCCACGCCTCTCCTCTCACCCCATGCAC
GCCCTAACTCGCCGGTCAACTACCCCCTGTCCCCCGCCCCTTCATTAAAG
CGTGTTTGTACTTACGCTTCCTGCGCCCACCGCTTGCCGCAAACGAACGG
TTCGATTCTGGTCGATGCGTTCGGCTTTGATTTCGGCGATGGAAAGTCTT
TACGGCCGAAGTCCGGCTCGGCTCTCCTGCCCGCCAGAGGGGAGTCGGTG
GAGATCGCCAACCTTCGTCCCTTGGAGGCGCCGAACGGGTCGTCGTCCAG
GTGAAGATAACGAAGGAGTTGGCTGTGTTAGCCAACGAGTTGAGACTTGT
GCGTAGGAACTTCTGCTTCTCTCTGCGGAGGGTACGGACAGGGTACAAGC
CGGCCGGAGCAAACTCGTGCCTGATGCCGATCAGACCGTGAGTACAGCGA
GTCGAGGGAACCACCCCATAAAACGTCTGAGAGATAGGATGCACGTGTTC
ACGCCAATTTTAGACGGTATTGCGACGGCGATGTGGGTTGCCGTTCCGCC
GTATTTTCACGTCATGTTTGATTCTGCGGCGGTTGGAGTGTTTCTATCGG
CGATCCAGGCATTTATTATGTGCCCACAAGAGCTGGGAGACCAGTGCGTT
GTAACTACACCGCGAAGAGGAGAGAAGGGCGCAGGAAAACGAGCACGGGG
CTTTCCTATCGAAAATGGTTCACCTTTTGGTAGTTGGTATACACCAGGTT
TCTGGAACGTACCGGAGACCAAAGCGGGAATACTCTACGACCTGATACTC
GCGCTCGTTCAAATCATCTTCAAGCAACATTGCGAGCATTCGGTTCCTGT
CTCTTCGTTGTTGACGCGCTACTACTGCCGCGAACAGAGCCCCCCGTCAC
CCCCGCCCCCCTCCTTTCCCTCCCTGCCACACATTCGATGCTCCACCGTG
GTCCGCGTTGGTTTAGGGTAAGCGCGCGCGCGAGGGCGGCCAGCATCACA
AGGGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig61:696403..701109-

>mRNA_P-fluviatile_contig61.12876.1 ID=mRNA_P-fluviatile_contig61.12876.1|Name=mRNA_P-fluviatile_contig61.12876.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=792bp|location=Sequence derived from alignment at P-fluviatile_contig61:696403..701109- (Porterinema fluviatile SAG_2381)
GCTACTTTTTCTCTCTCGTTGGCTTTCTGGTCGCCTTATCCGCCCGAGCC
GAACCAGAGCGGCGAACAAGGCCGGGCGACCCCAGACCACCTCAAGGGCC
ACGGGGGGATCCGCACGCAACCACCGAGCAGGCTACTTTTTCTCTCTCGT
TGGCTTTCTGGTCGCCTTATCCGCCCGAGCCGAACCAGAGCGGCGAACAA
GGCCGGGCGACCCCAGACCACCTCAAGGGCCACGGGGGGATCCGCACGCA
ACCACCGAGCAGGTCTAGCGACAAGGCCACGAGCACCAGGATGTCCAAAG
GTCGGGATCAGCACCGATCTACCCCCGCTCCTTCGTACAGCAGCATGCTC
GCGACGCGGCGCACCGAAGCGGCTTCGGCAGAGGTCTAGCGACAAGGCCA
CGAGCACCAGGATGTCCAAAGGTCGGGATCAGCACCGATCTACCCCCGCT
CCTTCGTACAGCAGCATGCTCGCGACGCGGCGCACCGAAGCGGCTTCGGC
AGAGTCTTTACGGCCGAAGTCCGGCTCGGCTCTCCTGCCCGCCAGAGGGG
AGTCGGTGGAGATCGCCAACCTTCGTCCCTTGGAGGCGCCGAACGGGTCG
TCGTCCAGTCTTTACGGCCGAAGTCCGGCTCGGCTCTCCTGCCCGCCAGA
GGGGAGTCGGTGGAGATCGCCAACCTTCGTCCCTTGGAGGCGCCGAACGG
GTCGTCGTCCAGGGTAAGCGCGCGCGCGAGGGCGGCCAGCATCACAAGGG
GGGGTAAGCGCGCGCGCGAGGGCGGCCAGCATCACAAGGGGG
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