mRNA_P-fluviatile_contig60.12758.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig60.12758.1
Unique NamemRNA_P-fluviatile_contig60.12758.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig60.12758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig60contigP-fluviatile_contig60:68524..68976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817018.5073748-UTR-P-fluviatile_contig60:68523..686611622817018.5073748-UTR-P-fluviatile_contig60:68523..68661Porterinema fluviatile SAG_2381UTRP-fluviatile_contig60 68524..68661 +
1693570821.372148-UTR-P-fluviatile_contig60:68523..686611693570821.372148-UTR-P-fluviatile_contig60:68523..68661Porterinema fluviatile SAG_2381UTRP-fluviatile_contig60 68524..68661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817018.5175085-CDS-P-fluviatile_contig60:68661..689761622817018.5175085-CDS-P-fluviatile_contig60:68661..68976Porterinema fluviatile SAG_2381CDSP-fluviatile_contig60 68662..68976 +
1693570821.3818355-CDS-P-fluviatile_contig60:68661..689761693570821.3818355-CDS-P-fluviatile_contig60:68661..68976Porterinema fluviatile SAG_2381CDSP-fluviatile_contig60 68662..68976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig60.12758.1prot_P-fluviatile_contig60.12758.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig60 68662..68976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig60.12758.1

>prot_P-fluviatile_contig60.12758.1 ID=prot_P-fluviatile_contig60.12758.1|Name=mRNA_P-fluviatile_contig60.12758.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=105bp
MACGRDNFVLIKAEWFEVYKGSTIHRRPTRPHIVRWSFRGRESNSSESSC
RENMLSAAACFPPLFVLRGLHDTLRADRMSTKSLKSLCDSTPLATIAAPM
GSCIS
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mRNA from alignment at P-fluviatile_contig60:68524..68976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig60.12758.1 ID=mRNA_P-fluviatile_contig60.12758.1|Name=mRNA_P-fluviatile_contig60.12758.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=453bp|location=Sequence derived from alignment at P-fluviatile_contig60:68524..68976+ (Porterinema fluviatile SAG_2381)
CGGCTCACCCGGAGCCCGAAGAAGGACTGATGGTGTCCGACTCCTCTTCG
ACCTGCGGAGACCTGACGGTTGACACTCTAGAGTAGTGCACGCGGCCAAC
GGCAAGGCTCCTAAGGTAGAAATGGCGGGCGCGTCAGTATGGCTTGTGGT
CGTGACAACTTCGTCCTCATCAAGGCTGAATGGTTCGAGGTCTACAAGGG
GAGTACCATCCATCGTCGGCCCACCCGGCCCCACATAGTCAGATGGAGCT
TTCGTGGTCGCGAGAGTAACAGCTCGGAAAGTTCCTGCAGGGAAAACATG
CTGTCTGCGGCTGCCTGCTTCCCCCCCCTTTTCGTCCTTAGAGGCTTACA
CGACACGCTTCGTGCGGACAGAATGTCGACGAAATCCTTGAAGAGTCTGT
GCGACTCCACTCCCCTAGCTACCATTGCTGCACCCATGGGATCATGCATT
TCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig60:68524..68976+

>mRNA_P-fluviatile_contig60.12758.1 ID=mRNA_P-fluviatile_contig60.12758.1|Name=mRNA_P-fluviatile_contig60.12758.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=630bp|location=Sequence derived from alignment at P-fluviatile_contig60:68524..68976+ (Porterinema fluviatile SAG_2381)
ATGGCTTGTGGTCGTGACAACTTCGTCCTCATCAAGGCTGAATGGTTCGA
GGTCTACAAGGGGAGTACCATCCATCGTCGGCCCACCCGGCCCCACATAG
TCAGATGGAGCTTTCGTGGTCGCGAGAGTAACAGCTCGGAAAGTTCCTGC
AGGGAAAACATGCTGTCTGCGGCTGCCTGCTTCCCCCCCCTTTTCGTCCT
TAGAGGCTTACACGACACGCTTCGTGCGGACAGAATGTCGACGAAATCCT
TGAAGAGTCTGTGCGACTCCACTCCCCTAGCTACCATTGCTGCACCCATG
GGATCATGCATTTCGATGGCTTGTGGTCGTGACAACTTCGTCCTCATCAA
GGCTGAATGGTTCGAGGTCTACAAGGGGAGTACCATCCATCGTCGGCCCA
CCCGGCCCCACATAGTCAGATGGAGCTTTCGTGGTCGCGAGAGTAACAGC
TCGGAAAGTTCCTGCAGGGAAAACATGCTGTCTGCGGCTGCCTGCTTCCC
CCCCCTTTTCGTCCTTAGAGGCTTACACGACACGCTTCGTGCGGACAGAA
TGTCGACGAAATCCTTGAAGAGTCTGTGCGACTCCACTCCCCTAGCTACC
ATTGCTGCACCCATGGGATCATGCATTTCG
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