mRNA_P-fluviatile_contig6.12699.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12699.1
Unique NamemRNA_P-fluviatile_contig6.12699.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: D7G2F8_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F8_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 4.680e-83
Identity = 136/200 (68.00%), Postives = 160/200 (80.00%), Query Frame = 1 
Query:    1 QACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDRDEVEVQAHQRTGSNGVPEVVGRVVPVPSEEQRQ 600
            QACGSYRRGKSHCGDVD+LIRPPEGQE     D  M  +L+ +L E GFITD+L+   GP+ PGK Q++MG+CKL G GRLHRR+DIK YPTS++AFAVLYFTGS HFN SMR+FAK+KG KLSD+GLCRVNTVN EEVH+F S SCLRE+DVF ALG+ WREPKDRD V+VQA    G  G  E+ GRVVPV  E+++Q
Sbjct:  210 QACGSYRRGKSHCGDVDVLIRPPEGQE-----DSPMFDDLIKRLVETGFITDKLTLAGGPHRPGKSQSFMGICKLPGTGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNTVNGEEVHRFPSYSCLREEDVFTALGLEWREPKDRDGVQVQAFCSKGEGGATELSGRVVPVTLEQEQQ 404
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 1.270e-76
Identity = 133/199 (66.83%), Postives = 159/199 (79.90%), Query Frame = 1 
Query:    4 ACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDRDEVEVQAHQRTGSNGVPEVVGRVVPVPSEEQRQ 600
            ACGSYRRGKSHCGDVD+LIRPPEGQE     D  +  +L+ +L E GFITD+L+    P+ PGK Q++MG+CKL G+GRLHRR+DIK YPTS++AFAVLYFTGS HFN SMR+FAK+KG KLSD+GLCRVNTVN EEVH+F S SCLRE+DVF ALG+ WREPKDRD V+VQA    G  G  E+ GRVVPV  E+++Q
Sbjct:  683 ACGSYRRGKSHCGDVDVLIRPPEGQE-----DSPVFDDLIKRLVETGFITDKLTLAGSPHKPGKSQSFMGICKLPGKGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNTVNGEEVHRFPSYSCLREEDVFTALGLEWREPKDRDGVQVQAFCSKGEGGATELSGRVVPVTLEQEQQ 876
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 7.260e-65
Identity = 118/177 (66.67%), Postives = 140/177 (79.10%), Query Frame = 1 
Query:    1 QACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDRDEVEVQAHQR 531
            QACGSYRRGKS+CGDVD+LIRPPEGQE     D  M +EL+ +L E GFITD L+ P GPYTPGKPQT+MG+CKL GEG++HRRLD+KLYPTSM+AFAVLYFTGSG FNM+MR FAK KG KL+D+GL +V+  + EEV      SCLRE+DVF ALGM+W EPKDR  V   +H +
Sbjct:  469 QACGSYRRGKSNCGDVDVLIRPPEGQE-----DSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGEGQIHRRLDVKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKSKGLKLNDKGLFKVDPFSGEEVPN-SGYSCLREEDVFSALGMDWIEPKDRKGVGPASHNQ 639
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 1.090e-59
Identity = 113/177 (63.84%), Postives = 133/177 (75.14%), Query Frame = 1 
Query:    1 QACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDRDEVEVQAHQR 531
            +ACGSYRR K +CGDVD+LIRPPEGQE     D  M +ELV +L E   ITD L+ P GPYTPGKPQT+MG+CKL GEGRLHRRLDIKLYP SM+AFAVLYF GSG FNM+MR F K KG KL+D+GL +V+  + EEV      SC RE+DVF ALGM+W EPKDR  V + +H +
Sbjct:  441 EACGSYRRVKRNCGDVDVLIRPPEGQE-----DSSMFLELVKELTETRLITDRLAVPEGPYTPGKPQTFMGVCKLPGEGRLHRRLDIKLYPASMFAFAVLYFAGSGDFNMNMRCFGKSKGLKLNDKGLFKVDPFSGEEVPN-SGYSCFREEDVFTALGMDWIEPKDRKGVGLASHNQ 611
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: A0A421FWQ7_9STRA (DNA polymerase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FWQ7_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.390e-35
Identity = 81/167 (48.50%), Postives = 109/167 (65.27%), Query Frame = 1 
Query:    1 QACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDR 501
            QACGSYRRGKS C DVD+LI  P+ ++CG      +L EL+ +L   GF+TD L+     +T G   T+MG+C++  EG  +RR+DIK+YP   + FA L+FTGS HFN SMR FA   G+ LSD  L RV  +N  +V + ES+ C  E DVF ALG+ ++EP +R
Sbjct:  441 QACGSYRRGKSACSDVDILITDPDAEQCG------ILPELLERLHAIGFLTDNLTHVSKQHTGGC-DTYMGVCRVS-EGLPYRRIDIKVYPRRFFGFATLHFTGSDHFNRSMRLFANKNGWNLSDRALTRVMRINGLKVKQGESVICESEVDVFIALGLEYKEPTER 599
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: A0A7S0CV83_9EUKA (DNA polymerase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CV83_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 4.720e-34
Identity = 80/174 (45.98%), Postives = 110/174 (63.22%), Query Frame = 1 
Query:    7 CGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLME----LVAKLKEAGFITDELSKPLGP-YTPGKPQTWMGMCKL----EGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDR 501
            CGSYRRG  + GDVD+L+  P+        D E+L      LV +L+  GF+TDELS   G      + QT  G+C+L    +G+ R +RR+D+K+YP   +AFA+LYFTGS HFN SMR +A  KG  LSD GLC+   VNRE V + +S+    E+D+FDALG+++ EP+ R
Sbjct:  253 CGSYRRGAPNSGDVDILMSHPK-------DDAELLSTFLPGLVTRLRRTGFLTDELSHGYGHGKRKHESQTCFGVCRLPPTTDGKRRRYRRIDLKVYPRRSFAFAILYFTGSDHFNRSMRWYAHKKGLTLSDHGLCKATRVNRERVWEGQSVFAETEKDIFDALGLDYVEPQFR 419
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: A0A7S2HHH8_9STRA (DNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHH8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.330e-34
Identity = 80/187 (42.78%), Postives = 113/187 (60.43%), Query Frame = 1 
Query:    7 CGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLE--------MLMELVAKLKEAGFITDELSKPLGPY-TPGK------------PQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDRD 504
            CGSYRRGK   GDVD+L+ PP      T QD E        +L  L+ +L  + F+TD+L+ P  P+ + G+            PQT+MG+CKL G   LHRRLDIK+YP  M AFA +YFTGS +FN SMR  A+ +G+ LSD+GL        ++     S++C  E+++F+ +GM+W+EP +RD
Sbjct:  111 CGSYRRGKQSSGDVDVLLGPPPS---ATGQDSEADEAAMQSLLPNLLQQLHTSNFLTDDLTLPYTPFKSSGRYPSDGNSAEGSLPQTYMGVCKL-GADHLHRRLDIKVYPREMIAFAQMYFTGSDYFNRSMRCLARRQGWSLSDKGL--------KKRFGAGSVTCHSEKEIFEVMGMDWKEPHERD 285
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: A0A5D6XPH7_9STRA (DNA polymerase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPH7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 7.790e-34
Identity = 84/188 (44.68%), Postives = 118/188 (62.77%), Query Frame = 1 
Query:    4 ACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDR--------DEVEVQA-HQRTGS 540
            +CGSYRRGK   GD D+LI  P+ +EC      ++L EL+ +L E GF+TD+L+  +  +  G   T+MG+C++  +   HRRLDIK+YP   + FA+LYFTGS HFN S+R FA  KG+ LSD  L  V  VN + V +  S+ C  E DVF ALGM++++P++R        DE E  A H++ GS
Sbjct:  461 SCGSYRRGKLSSGDCDVLITDPDNEEC------DVLPELLKRLHETGFLTDDLTH-VSEHHMGGCDTYMGVCRVSKD-LPHRRLDIKVYPRRCFGFALLYFTGSDHFNRSVRLFANKKGWSLSDRALKPVTCVNDKRVARGASVVCTSEVDVFIALGMDYKDPRERNCFDVKFLDEDEANAKHRKKGS 640
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: A0A077ZTC7_STYLE (Helix-hairpin-helix motif family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZTC7_STYLE)

HSP 1 Score: 145 bits (367), Expect = 2.670e-33
Identity = 80/167 (47.90%), Postives = 110/167 (65.87%), Query Frame = 1 
Query:    4 ACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDRD 504
            ACGSYRRGK  CGD+D+LI   +G     S    ++ +LV KL+  GF+ + L   L   + G  + +MGMC+L  +  L+RR+DIK YP S Y FA+LYFTGSG+FN SMR FA+ KG+ LSD+GL  V  V  ++V +F SI C  E+DVF AL ++++ P +RD
Sbjct:  377 ACGSYRRGKQSCGDIDILITRTDG-----SPITGIVEKLVIKLESIGFLKERLGS-LRHSSTGS-EGYMGMCQLTPD-HLNRRIDIKAYPLSQYGFAILYFTGSGNFNRSMRLFAQKKGYSLSDQGLQPVLRVKGQKVAEFNSIPCETEEDVFKALNLDYKAPHERD 535
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BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Match: UPI0018F3A760 (DNA polymerase lambda isoform X4 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F3A760)

HSP 1 Score: 139 bits (350), Expect = 6.230e-33
Identity = 75/168 (44.64%), Postives = 105/168 (62.50%), Query Frame = 1 
Query:    4 ACGSYRRGKSHCGDVDMLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQTWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAKLKGFKLSDEGL-CRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDRD 504
            ACGSYRRGK  CGDVD+LI  P+G+       + +  +++A L++ GF+TD+L   +     G  + ++G+C+L G G  HRRLDI + P S +A A++YFTGS HFN SMRA AK KG  LS+  L C V      ++     IS + EQD+F  LG+ +REP +RD
Sbjct:  138 ACGSYRRGKPTCGDVDVLITHPDGKS-----HIGVFTKILAGLRDTGFLTDDL---VCREDIGNQKKYLGVCRLPGPGHRHRRLDIIVVPYSEFACALMYFTGSAHFNRSMRALAKTKGMSLSEHTLNCHVLRKGSAKISTGVPISTITEQDIFQQLGLPYREPCERD 297
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2F8_ECTSI4.680e-8368.00DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JHQ3_9PHAE1.270e-7666.83DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI7.260e-6566.67DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JQ91_9PHAE1.090e-5963.84DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A421FWQ7_9STRA1.390e-3548.50DNA polymerase n=2 Tax=Phytophthora kernoviae TaxI... [more]
A0A7S0CV83_9EUKA4.720e-3445.98DNA polymerase (Fragment) n=1 Tax=Amorphochlora am... [more]
A0A7S2HHH8_9STRA5.330e-3442.78DNA polymerase n=1 Tax=Dictyocha speculum TaxID=35... [more]
A0A5D6XPH7_9STRA7.790e-3444.68DNA polymerase n=1 Tax=Pythium brassicum TaxID=148... [more]
A0A077ZTC7_STYLE2.670e-3347.90Helix-hairpin-helix motif family protein n=1 Tax=S... [more]
UPI0018F3A7606.230e-3344.64DNA polymerase lambda isoform X4 n=1 Tax=Scyliorhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:3738667..3744235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.5
Seed ortholog evalue3.2e-61
Seed eggNOG ortholog2880.D7G2F8
Preferred namePOLB
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size2291
Cds size564
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817013.8064127-UTR-P-fluviatile_contig6:3738666..37387171622817013.8064127-UTR-P-fluviatile_contig6:3738666..3738717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 3738667..3738717 +
1693570791.9555562-UTR-P-fluviatile_contig6:3738666..37387171693570791.9555562-UTR-P-fluviatile_contig6:3738666..3738717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 3738667..3738717 +
1622817013.8621335-UTR-P-fluviatile_contig6:3742038..37420441622817013.8621335-UTR-P-fluviatile_contig6:3742038..3742044Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 3742039..3742044 +
1693570792.0032606-UTR-P-fluviatile_contig6:3742038..37420441693570792.0032606-UTR-P-fluviatile_contig6:3742038..3742044Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 3742039..3742044 +
1622817013.8716688-UTR-P-fluviatile_contig6:3742565..37442351622817013.8716688-UTR-P-fluviatile_contig6:3742565..3744235Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 3742566..3744235 +
1693570792.015141-UTR-P-fluviatile_contig6:3742565..37442351693570792.015141-UTR-P-fluviatile_contig6:3742565..3744235Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 3742566..3744235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817013.818071-CDS-P-fluviatile_contig6:3738717..37387471622817013.818071-CDS-P-fluviatile_contig6:3738717..3738747Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3738718..3738747 +
1693570791.9671164-CDS-P-fluviatile_contig6:3738717..37387471693570791.9671164-CDS-P-fluviatile_contig6:3738717..3738747Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3738718..3738747 +
1622817013.827748-CDS-P-fluviatile_contig6:3739539..37397331622817013.827748-CDS-P-fluviatile_contig6:3739539..3739733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3739540..3739733 +
1693570791.9760683-CDS-P-fluviatile_contig6:3739539..37397331693570791.9760683-CDS-P-fluviatile_contig6:3739539..3739733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3739540..3739733 +
1622817013.8413775-CDS-P-fluviatile_contig6:3741089..37412511622817013.8413775-CDS-P-fluviatile_contig6:3741089..3741251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3741090..3741251 +
1693570791.9855201-CDS-P-fluviatile_contig6:3741089..37412511693570791.9855201-CDS-P-fluviatile_contig6:3741089..3741251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3741090..3741251 +
1622817013.8526633-CDS-P-fluviatile_contig6:3741860..37420381622817013.8526633-CDS-P-fluviatile_contig6:3741860..3742038Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3741861..3742038 +
1693570791.9944537-CDS-P-fluviatile_contig6:3741860..37420381693570791.9944537-CDS-P-fluviatile_contig6:3741860..3742038Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 3741861..3742038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12699.1prot_P-fluviatile_contig6.12699.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 3738718..3742038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12699.1

>prot_P-fluviatile_contig6.12699.1 ID=prot_P-fluviatile_contig6.12699.1|Name=mRNA_P-fluviatile_contig6.12699.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=188bp
MLIRPPEGQECGTSQDLEMLMELVAKLKEAGFITDELSKPLGPYTPGKPQ
TWMGMCKLEGEGRLHRRLDIKLYPTSMYAFAVLYFTGSGHFNMSMRAFAK
LKGFKLSDEGLCRVNTVNREEVHKFESISCLREQDVFDALGMNWREPKDR
DEVEVQAHQRTGSNGVPEVVGRVVPVPSEEQRQQHQQ*
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mRNA from alignment at P-fluviatile_contig6:3738667..3744235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12699.1 ID=mRNA_P-fluviatile_contig6.12699.1|Name=mRNA_P-fluviatile_contig6.12699.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5569bp|location=Sequence derived from alignment at P-fluviatile_contig6:3738667..3744235+ (Porterinema fluviatile SAG_2381)
CAGGCCTGTGGGAGCTACAGGAGGGGGAAGAGCCACTGCGGCGACGTCGA
CATGCTCATTCGCCCCCCCGAAGGCCAAGAGGTGTGCATGCGTGGTCAAA
ATGCTTGCGCGCGCGAGCAGGAGAGAGGGAGAGGGAGAGATAGATCACCA
ATCGTTCCACTAGTGTACCTTCCTGCATTCTGCTGGGTGTTGGCCGTTTC
AGTCGCCACTTTCCCGTGGACCGTCCAGCCGAAAAAGCCAGGCGTTTATT
GTACGTCGGTGGAATACTCATTTAGCGCCCTCTTGTGAAGTAGTAGGAGG
GTTGGAGGTTGCGAGCACGCGGAGTATTGTTTTGGCATGTTACTCACTCA
AACTCCTGGCGTGCGACTCATCGGCGCTGAAACGAAAGGCCTTGCCACAA
GTCACCGTCGCTGCTGCTGACGATGGTGATGATGATGACGTGGAGAGGTC
GAATAATGGTGAGCAATTCGCGCCGCATTTCACTTGAATACGCACCCCGG
GGTTTGCAAAGTAATTGTGTCGGCGGGGCAGAACGAAGGCTGCCGCATGT
ATGCTTCATCGTCGTCTCTCTCCACGGCTTTAAGCAAGGTTACACTCTCG
CTGTTGCTCGTTCTCACTCTCACTCTCACGCTCACACCGGTCGGAAGTCA
CCGCAACGCAGATGGCCGACGGCATCTGAGCTCAACCCGTACCCCGTGTG
TCCGCCGTTGGAATCGCCTATACCCCCGATTTGACGTTTATTTGTTTCCT
ATTTTCCCCGTTCTCTCCTCGCACGCAGCCTCATTCCCCGCCCTTCACTT
CCAACCCCTCCTTTTGTTTCCATTGTCTCTCTCCCCTTTCGTCGCATACC
CTGCCGTCGCCGCCGCCGCCGAGTGCGGTACGTCGCAGGATCTCGAAATG
CTGATGGAGCTGGTGGCCAAGCTGAAGGAGGCGGGCTTCATCACCGACGA
ACTCTCGAAGCCCCTGGGGCCCTACACGCCGGGAAAACCGCAGACGTGGA
TGGGGATGTGCAAGCTGGAGGGGGAGGGGCGGCTCCACCGCAGGCTCGAC
ATCAAGCTCTACCCCACGTGCGTATGAGGGCATGGTTTTTGCTGGTGGTG
ATGGTGTTGGTCGAGAAATGGACCTGGGAGTATGAGTCCTTGTATAGTGC
CGGTGTGTGCCAGAGGCCAGACTCCTCGGCACTATTTCAGGCCGCCGGCA
CTTCGCAGAAAATGGAAGCACCAGGCCGTCCGCGCTTTGAGACAAAAAGT
GCAAGTAAACTTCCCGGGTCCAAGACACTGGTCATTTCGGAAGCAAGATG
CGACGCACGTTCATGTCGAGACATCGTTGCTCAAACCTTGAAAACACTTA
CTCGCGGTAAGGTAACCTTTGACAACTTAATCATGCCTGGAATGAAAGCG
GGGCCGCCTTCATAGGCGTCGGCATTTCTGCCAAGGAAAATCACGGGCGA
TTTATCAGTATATCGGCGCGGTTCAAGTGGTGTCATGGCACAGCTATCTA
GTAACGATACCACCCGTCCGTCATCAAATACCTCTGGAACCAAGCAACAC
CGATGATATGAAGTAGGTGAGTTTCGGAGACGGATTCAGAGAAAATTTGG
GGGAAATGCAAGCGTTCGTGTATGGCAACGATGTCGTTAGTTGATGAAGA
AACCCCACAGAAGAAACAGCTATACGGATAGGCCTGCGCAACCAGTGTGA
GTGCGGTGGATGGTACACCGCGAAAGCGCGGTACGATGTCGAGCTTCGAC
GAGCCCCGTGTCGAGCGTTGATATTGTCGCGTACGTCACCGCTGCACACT
TGTCGAAGGGTTGGTTCCGCCCGAAGTGATGCATACGTGCCTTATCTCAT
TCGGATACCGCGCCGGTTCCGAATGATAGGCAGGCAAGCAAGGTACTCCT
CGCGGTCCACCCTGCCCCTCGGCGGCCTCTCGACGCAATGCCGTTTGTTA
TTTAGATGCGTGACGTGATCGGATCAACCCGCCCTTGAAAGTGGTTCTTG
AGCTTCAGGATTCATCCATTCGTAGGACTCCTTGTGTGACGCTCGTGAGT
AAAACGCCTTTCTTTGTCCGCGTAGCAACCACGAGACACGGGTCGAAGTA
GCGGTGTCAATCTGCTCGCTCCTTGACCATCTTGGGTGTTTGCAAACCTG
AAGGCACGATGCTAACACCACTTAGACGTCACACCATAAGGACGCATGAT
CCTAGGTAGTGCCTCCATGGCCAAGACCCGTCGTTCGCCATCTCGGGCTT
TGTCGGGACTCGAGGTCAATGGTCTCATGGTCGCAGCGTGTGAATGACTT
TGAGAACACTCCCCACCCCCTCGATGACCAGAAGTCCCCCCTCCCCCTCC
CCCCTCGTCTCTTGCTCGCCGCCGCTCTCCCTCGcCCCCCTTCCTCCTGC
CGTCGCCTTCTGCTTGCTCGCAGGTCGATGTACGCCTTTGCCGTGCTGTA
CTTCACGGGGTCGGGCCACTTCAACATGAGCATGCGCGCGTTTGCCAAGC
TTAAGGGTTTCAAGCTCAGCGACGAGGGCCTGTGCAGAGTCAACACGGTC
AACAGGGAGGAGGTGCACAAGTTCGAGAGCATCAGGTGCGGACCAGCGGG
TGGGGGTGCAGCAGGAGTACCAATCGTGTGTCCCGTAGTACGGCAGCAGC
AGCAGCAGCGGCTGAAGCGGTTGTTGCATTTTTGGCTTTCGGACAGCAAT
TCCACAAGCACATTAGAGAGGTTGCGACACCGCCGGAGTAAGGCATCAGA
TGTGCATCACCACCAGATAGCAGCGCTGCAGTCACGTCCACCTAGCGTGG
GAGATTCGCCCCGCGACAGGCCTTTGCCCCAAGCGCATCTGCAGGCGATC
TTTTATCACTTGTTTGTGGGCGTGCCATCCTACAATCCAGCGCGCCCTCT
GTCCATGCGGTCCAGCATCTCCCCGCCCCCACCCTCTCCAGCTAGCCTGG
CCGGGGTGCTGGTGGGGGCGCAAGGGGTTCGTTCCTCCTTCTACTGCAAG
ACGGTCATGCCTGCATGCTGACTAGCGATCTCCGCATCCCCGGCCCTTCG
TCTGCCCCGCCTCTTTTCTTCCGCGGACCAGCGATGCCGCCTCTTAACTC
TCTCCTACCTGTTTTCCGAATATCCCTCCTCCGCTCTTCCTTCCCTCCTC
CCTGCCGGCCTTCCTCCCTTCCTCCGTGCTACTTAAATCACCAGCTGCCT
GCGAGAGCAAGACGTGTTTGACGCGCTTGGGATGAATTGGAGGGAGCCGA
AGGACAGGGACGAGGTCGAGGTGCAAGCTCACCAGCGAACCGGATCCAAT
GGGGTGCCTGAGGTGGTTGGGCGTGTGGTGCCGGTGCCGTCCGAGGAGCA
GCGGCAGCAGCATCAGCAGTAGCAGCAGGTGATGAGGTTTCAGCCCCGAG
AGGTCCGCGTCGCCGCGGACGCTTCTGTTTCCTTTGTTGCGTGCAGAGGT
AGAACAGGATGAGCTTGCTTCCCTTTGAGCGCGGGGGTTGGGAGCAATGG
CCGCACTTTTCATGGCCGTACAAAGTACAGAGGTGAATCCACTCCATTTC
TGGCGGCGCAGCCGCGGACGGATGCCCTCGCGGCGGGTGGGTAAAGGTGG
CGTGCGGATTCGACGGGTATGTTGCCCCAGAGCAGAGTTGTGCACTGCGG
CAGCTGACTTTAGGAGTGGGTAGCAAACGCAAATGCTCGGACGGAGAGCT
TCATGGTCAAAAGCGAAAGGTGTGCTCCACTCAAGTTTATTGCAATCAAG
TGAAACGGGAAATCCGGAATAACAGGATGAAGAGCTCTTATTGCGGATGT
TAGCCCTTACCGCAATGCGCTCTGCATGGCTTTATTCCTGTACTCTACGT
GTTCAGCACCATCGCTCATACCATAAGGTTTGATTCACCATTCTCTCAGG
CGGCGGGCGACTGCTGCGGCGGCGAGGAGCAGGAGAACGAACTGGAACCA
ATGATTCGGAAGCAGGCGTACTTGGAGCGGAGGGAGAGCGAGGAGCTGCA
GAAAGCGATCCTCAGCGGCAGTGTCGCTTTCTGCTCCGGGGTGGGAGGGT
CGGCGGCAGCGGCCGCGGCGGTGGGTAGAGCGGCGGGCGGAGGAGGGGGC
GCCGCAGAGGACGACTTTTATTCCGGGAACGACCAGATGATGCAGGAGGC
GCTTCGCCGCATCGTTACCGACATCGCACCAACCGTGAGGGGCGCCCGAC
CGGGGGATGGAGGGGAGGAGGAAGAGTTATGGGAGGAGCTGCCGCCCAAG
CTTCTGGCGGGCGGCGGCGGAAGCGGCTTTGCGGTGAGGGATGGTGGAGG
CGGCGGCGGCGACGGTGGCGGTGTCGGCAGCGCAGGCACTGGCAGCGAGC
ACTCGCCTGTGTGCTTCTGAAGCTGAAGCCGGAGGGGTAGGAGGGGGGCT
GCTCTCTGGAGGGCTAGCCTGAGATGCAGCGAATGCATCGGAAGGGCACG
TATGCCCCCGGCAGTTTACCGGCATAAGGATGATAGGGAAACACGACGAG
TGGACTCGGGATGGAAGGGGCCCCGCGGGATGACCGCAAGGAAGAAATAA
GAAGACGGCCAAGTGGGAAACAGCGTGTGCCAAGTAGACGCGACGGCATA
GGTGGGCGATTGAGGTCTGGGTAGTGCAAAGCGGCAATATGACGAGGGGG
ATGTGGGTTGTGTGGTACTCTCTCTCTTTCCCGAGAAGATGCCCTGGTCG
CGTGATGTGCATTCATGCGTGCGGCGCATTTTTGCATGTACGGAGCGAGA
GGGAAAGGCGGCAGTTGAGTACTTCGTCCCATGGCCCGGCTGTTTGGAGT
GGCTTGGGACTCGGAAATTTTTTCTGTAGGGAAAACGTGATGGATATTCG
CCTCTCACTGAGCGGGATGAAAGCCCCCCTTTCGTGAAGAAGAGCATGAG
GCATGTATGTATGGTGCACGATTTCGTGCGATGTACGGTGAAGTCTGGGG
CGCACATATGTTAGGCTTTTATGAGGTCGGAGTGTGTGTGTTGTGTTTCG
CGGTGTTTTTTACGTGAAATCATTGGGTCGTGAAGGGTGAATCTAGAACG
GAGAGTTTTGTGTGTGGTCTCGTACAGCGTTTCCACGCCCGATCCAGTGG
AGAAGTTCCAGCACGAGCTCGACTTCGATATCACGCTCAGACACTGCCTC
GGCAAGCATGAGCGCCGCGGTGTGCGGTTCATGCCTTGGACGTATGACGA
AAACGTAGAGCGGCACAAATGGAATTCGATGGGTGATGTTGTCAACACCG
CAGTACCTACGTGTTGGTTGCCGAGGGTGTGGTGGATCGGTCCGCCGAAT
GGAGGGCGGCCGCAAGGAATGGGAGACGGGAACCGACACGCATGTGCAGC
GGACAAGCAGGTCTTCATGCGAGGACGGCGTGGTTTTCTCTGGAGTGGGA
CCGAGAGAACAAAAGTTTGTCGTCGAGCTCGCTTTTGACGTTATTTTCCG
CGTTTTTTGTGCGATCGGGTCAGCGGCGCCGTCAAGCCATCTGTGTGGGC
AGCCTGGAGAACTGTGGACTCCGTCACCGCAGAGTACAGAGAAACAAGTG
TCTCAGCAGGCTCGTCGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig6:3738667..3744235+

>mRNA_P-fluviatile_contig6.12699.1 ID=mRNA_P-fluviatile_contig6.12699.1|Name=mRNA_P-fluviatile_contig6.12699.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1128bp|location=Sequence derived from alignment at P-fluviatile_contig6:3738667..3744235+ (Porterinema fluviatile SAG_2381)
ATGCTCATTCGCCCCCCCGAAGGCCAAGAGATGCTCATTCGCCCCCCCGA
AGGCCAAGAGTGCGGTACGTCGCAGGATCTCGAAATGCTGATGGAGCTGG
TGGCCAAGCTGAAGGAGGCGGGCTTCATCACCGACGAACTCTCGAAGCCC
CTGGGGCCCTACACGCCGGGAAAACCGCAGACGTGGATGGGGATGTGCAA
GCTGGAGGGGGAGGGGCGGCTCCACCGCAGGCTCGACATCAAGCTCTACC
CCACTGCGGTACGTCGCAGGATCTCGAAATGCTGATGGAGCTGGTGGCCA
AGCTGAAGGAGGCGGGCTTCATCACCGACGAACTCTCGAAGCCCCTGGGG
CCCTACACGCCGGGAAAACCGCAGACGTGGATGGGGATGTGCAAGCTGGA
GGGGGAGGGGCGGCTCCACCGCAGGCTCGACATCAAGCTCTACCCCACGT
CGATGTACGCCTTTGCCGTGCTGTACTTCACGGGGTCGGGCCACTTCAAC
ATGAGCATGCGCGCGTTTGCCAAGCTTAAGGGTTTCAAGCTCAGCGACGA
GGGCCTGTGCAGAGTCAACACGGTCAACAGGGAGGAGGTGCACAAGTTCG
AGAGCATCAGGTCGATGTACGCCTTTGCCGTGCTGTACTTCACGGGGTCG
GGCCACTTCAACATGAGCATGCGCGCGTTTGCCAAGCTTAAGGGTTTCAA
GCTCAGCGACGAGGGCCTGTGCAGAGTCAACACGGTCAACAGGGAGGAGG
TGCACAAGTTCGAGAGCATCAGCTGCCTGCGAGAGCAAGACGTGTTTGAC
GCGCTTGGGATGAATTGGAGGGAGCCGAAGGACAGGGACGAGGTCGAGGT
GCAAGCTCACCAGCGAACCGGATCCAATGGGGTGCCTGAGGTGGTTGGGC
GTGTGGTGCCGGTGCCGTCCGAGGAGCAGCGGCAGCAGCATCAGCAGTAG
CTGCCTGCGAGAGCAAGACGTGTTTGACGCGCTTGGGATGAATTGGAGGG
AGCCGAAGGACAGGGACGAGGTCGAGGTGCAAGCTCACCAGCGAACCGGA
TCCAATGGGGTGCCTGAGGTGGTTGGGCGTGTGGTGCCGGTGCCGTCCGA
GGAGCAGCGGCAGCAGCATCAGCAGTAG
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