mRNA_P-fluviatile_contig6.12482.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12482.1
Unique NamemRNA_P-fluviatile_contig6.12482.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:1587443..1591769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12482.1prot_P-fluviatile_contig6.12482.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 1587443..1591769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816967.0770683-CDS-P-fluviatile_contig6:1587442..15874801622816967.0770683-CDS-P-fluviatile_contig6:1587442..1587480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 1587443..1587480 -
1693570629.2281513-CDS-P-fluviatile_contig6:1587442..15874801693570629.2281513-CDS-P-fluviatile_contig6:1587442..1587480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 1587443..1587480 -
1622816967.089525-CDS-P-fluviatile_contig6:1588429..15886551622816967.089525-CDS-P-fluviatile_contig6:1588429..1588655Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 1588430..1588655 -
1693570629.2383988-CDS-P-fluviatile_contig6:1588429..15886551693570629.2383988-CDS-P-fluviatile_contig6:1588429..1588655Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 1588430..1588655 -
1622816967.1028686-CDS-P-fluviatile_contig6:1591646..15917691622816967.1028686-CDS-P-fluviatile_contig6:1591646..1591769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 1591647..1591769 -
1693570629.2484453-CDS-P-fluviatile_contig6:1591646..15917691693570629.2484453-CDS-P-fluviatile_contig6:1591646..1591769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 1591647..1591769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12482.1

>prot_P-fluviatile_contig6.12482.1 ID=prot_P-fluviatile_contig6.12482.1|Name=mRNA_P-fluviatile_contig6.12482.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
ASVSREIDTTESMGCTSSKEQVAGGVSASGKVAEISDLGVKEQATTEAAP
AAADAAAAVKEVEEETKVEGETTAAAEEEETKAEVEAAVELEEVATPAAV
DPEQIAAPAVVVVDNTGDAPVITSTDTPA
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mRNA from alignment at P-fluviatile_contig6:1587443..1591769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12482.1 ID=mRNA_P-fluviatile_contig6.12482.1|Name=mRNA_P-fluviatile_contig6.12482.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4327bp|location=Sequence derived from alignment at P-fluviatile_contig6:1587443..1591769- (Porterinema fluviatile SAG_2381)
GCTTCAGTCTCCAGAGAGATAGACACAACCGAGAGCATGGGGTGCACTTC
ATCAAAGGAGCAGGTCGCTGGAGGTGTCTCGGCGTCTGGGAAGGTCGCCG
AGATATCTGATCTCGGAGTTAAGGTGGGATAAAGCGTCGGTGGTACACAC
AGGGATATTCAGAAGCGTTTTGTGTGTGTAGGAGAGAGAGAGAGGGAGAG
GGATTGCGGGAGGACGAAACACATCGAGAGAGCTGCATGCGATACATGCG
GAGCGCGTCAAATACAGAAACAGCAGCCACGCGCTACTGCTTCGTATGGA
GCCCCAGCTGATAGCAAAATTCAACCCTTGCCATGAGAGAAAGAGCGAGA
AAGAGAGGACAATACACGGCAGGGCAGGGAGGGAGCTATCTCTTGTGCGG
CAAAAATGCTTCTTCTGCTGCCGTTCCTTGTGGCCAGCAGCGAGGAGCCT
CGTTCCTATTCCGAATCACCAGGAAAGGGGTTCGACGTTCGAAAATCCTC
TAGCCGCGGCAATCGATTGCTTCTCGCCCTTCCTTGGGCTGCACACGCGT
GTGCCGTCAGCCTGCTGTGCCCAGCTGCTGGCTTTCTCTCCACCACCCTC
GGTCCCCGAAAAAGGAAAACCAAGAAAAACCTTTCCTGACTTTTTTTTTT
GCGGTCGCGAACATCGTTGGTTTTGTGAGACCTAGCCTCTCTCCTCGTTT
CAACTTGAACAGGAGGAAGAGGTTCAGCACAATGTGCTGAATCAAGGGGC
ACGGAAAGAAAACGAGAAATCAGCAGCAGTATCACAGGGGAGCCTTTGGT
CCTAACGGTACTGCAGGTTGTATGCGCGGGCGTCGTGCGTTGGGTGTGGG
CATAGAAGATCTCTACAACGGTTTTCGCCTCTTTCGCGCGTGCCGCGCAC
GCGGGGAATATACTTAGATTTTCAAGCTCGATCACACTTTCTTACAAGCG
CCGGTGACGCGGCTCTGTTGCGTCAGTCACCAAGTATACGAGCCCAAACA
CACGCTCTTTGTCCCGGTGTCCGACAGCCGTAGAGATGCAAGACTCAGAG
GTTCAGACTTGGCTTTTACTTCAAGGTTGTAGCGGCCTTGCCTCTTTCTC
CCTCGCTCCCCGCTCTCCGGCCCTCGCACTCCCTTGCGCCGGCCGTATCA
CTGCCCCCCCATCCTCTTCTTTCTCCTCCTACCGCCTCGCCCCCAAAAAC
GCATGCAAGCTTCCTTGCGTTTACCGTAGGTCGCATAAGGCATCACACAA
CCGAGATCGGTTTTGAAGTTCGGTATATCGACAGCGAGGAGTTGCCTTCA
CATTGAACGATGCGTCACTACAAGGCTCTCGACAGCCTCTCTCGAAAGCT
GCTCGGTTTGACGAAACAAGTACTGCTGTACCTATTTTGCCGCGGGGAAA
TTGAGCGTTCAAAATCGACCGAAGAGTGATGATATCTTATGCGACCTAGG
GTATCCCCAACCTCGACGTTTATGGTTATCATGATATCGACTCTGCGTAC
AGCAAAGAAGTTAAGCGGAGAAGTCAAGTCACTTGCGTCCCCACTCTTCC
TTGATCTCTCTCGTGCTCCGCGACTCGCGCTGCGCTCTGTCGCCCTCTCT
CCCGCGCGGCAAACCCCCTATCAACGCAATATTTGCTGCATACCGCACAT
GTCGGTCGGTCGTACACCAACCCATGTGCACGTATATGTTGCGTACAGAT
ATCATATACTCCATATCTGAAAACTCCCACGATATTTTGTTCTCTCGATC
ATCGAAGTCTCCGTACGTGGTGCGCGGTTCGTTTGCTGTTCAACATGGGA
TGTTGTCATCGCCATTCATCGCGCCTCGACGGTGGTTGGTTTTGCAGCCG
TAGAAACCTCATCGCCGGCTATCGTGTGCGACTTGTTTTTCCGGCATGCC
GTAGGGGTCGTGCAGCAGCAGGCAACCGAGCCTTCATGTTAATGTTTCAC
ACAAGCTCACCGACCCAACCAACTGATGATTCTCCGCCGACAGGTCGTGC
ACTGCCGTCGGCGTCGTTGTCCGAAATTCGTGTGCGTGTGCTGTGGATTT
CCACGCCCGGCTGTGGACAACTCTACGTTTCATTTATTGATAAAATAGAC
ATAAGGCAAACCCGTCTCATGTTGCGATTCATGTTCAGGCCGCCATCCTC
CCGTGGAATCTTGTCTCCTCGAGCCGTTATTATTAAGTAGCAACCTCCCC
CCGTTTCCAGCGCAAACCGCAATCGGTGTGCCAAAGCACAGAGTCCACAC
ACACAATTGTTTTGAGGCTCTCTCGATCATTGGGCTCTCCCCAAGCAAAG
CTTCGCGGTGGGGGTAGTTGACACCCGAAGTTTCATCCAGGAACATTTGC
TTCATCGTGAACCTGTCGTTCATGTTGTGGGGTTGACAAGACTGTATTAT
GCCAACAATGCCGTTTGCACCCGAGATTTCGCCTAATACGAAGCAGCAGC
TTTCTCGATCATGAACTCACCTTTTATTGTGCCATATTTCCTTGTGAGCA
GGGAACAAAACTCAGACGCTGGGCTCACTTCAACCTTCCCGAAAATGACA
AAAAAAAAAGGTCAAAACAAAGGACCCTCTGCACGAGGAGACGAGGTGAA
CCACGCAACTTCCGGGTCAAACTCCCTAAAAATCCCTCCTCATTTATGTG
AATCCCCGTGTCTACCGTTGTTTTTTTTTTTTTTTTTTTTTTTGTAATCC
CAAGGTCGATCGTTTCTGACTCTGGCATCACGTGAATCGGGGCTTGTGAC
CGCGTCGTGACAGCTGCTGCTCCTTTGGTACTTGTAGAGTGACCGCCGTT
TCGGCGCACTTGTTTTCCGCTTTCTGGGGGCCGCACGTCCTCTGGACTGC
ACGAAAGCATGCCCCCCCTCTTTCCCACTAGCTGTGTGTTTTGGGGCCTC
GCCCGGCCTTTCGGCTTCACAAAAATCGTGTTCCATCCGTCACCTCTATC
CCCCGCAAGCTTCCATGGAAGTGTTCCAATATTTTGTTGTGCCACAGGCA
ATCATGCCCTCCCCTCCGCCCCCCCGCTCTTCCCCCCCCTCGTCTGGCTG
CAATGCCTCCTTGTTGCACCCTTATGCACACCGGATCCTCGGGCATCATC
GCCCGCCCCCGCAGGAGCAAGCCACGACCGAAGCTGCGCCTGCTGCCGCC
GACGCAGCAGCGGCCGTGAAGGAGGTCGAGGAAGAGACCAAAGTGGAGGG
GGAGACCACGGCGGCGGCGGAGGAGGAGGAGACCAAGGCGGAAGTAGAGG
CGGCGGTGGAGTTGGAGGAGGTGGCTACCCCTGCCGCCGTCGACCCCGAG
CAGATCGCTGCCCCGGCCGTTGTTGTCGTTGACAACACAGGTGTGTGTGT
TTGTCCGTGGTCAGGGTCATCATTGCAGTTGAACAGGGCCTCGGTTCGAG
CACGCAGCATGCCTTACGATCTCACCCGCTCGGAAGGCGGTACCCGCGCT
GTACAAGCGGGCGATAATTGGGCCCCGCCGTGCAGCCGGCTCGAGGTCTA
CCGGGCCGTCAGACGGAGATAACATAAGTTTCAGTGAAACTGCCTCCTCA
AAAATCGGACACGTCTCTCTGTGCTTGTGGTTTGTGTGTCTGGTGCCGCA
TCCAACGAATTTTTCCTCTGTGAGCAGCAGGCAAGGTGGTCTCAGCTGCC
TTTCGATTGCCTCTTTTTGGCGTCGGTTTCCGTGTCGCGAAAAGATGTCT
GCTGAACTGAAACCAAGCCGTCAGGATTCGTAGGCAGCTTCGCTACGGGT
TACGATGTAGCGCGCGACGAGGGATAGGGGGGGGAGGGGGCAGGAGGCGA
CGGGTTGAACTTTCGATTTCTTCGCTCGATCTCGCCGCCGGCAATATTCC
TAGCAGCTTGACTATCCCCATCCTCGTCTCGTGTGTTGGTCGAGTCTGCT
TCTGCCAGAAGACTCGTCGCTTCGCGGAGAGCAATAGCAGCAGTTCCAAT
CGAGAAAAGGACGAAGACGATTTCACCCGTGTAATACCGTCCCCCCCGCC
TCGGCGCCTAGGGCCGGAGAGGAGAGATTGCGCGACGCTGGCTTGCGAAT
TTACGTTGTAGGAGAGGAGATCGCTTGTCGCTGGCTCACAAATGGGCATT
ATGGGAGAGGAGGATCTCGCGACGCTGACTCGAAAATAGACGTTGTAGGA
GAGGAGAGATCTTGCGACGCTGACTCGAAAATTGACGTCGCAGGAGAGAA
GACATCGCGCAACGCTGGCTCGACAACAGACGCTGAGCCCCCCTTACCCC
TTCCCTCTCCTCCAACCCGCGCGGTTCGGTACGCGGCAGGAGATGCTCCG
GTGATCACGAGCACCGACACTCCCGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig6:1587443..1591769-

>mRNA_P-fluviatile_contig6.12482.1 ID=mRNA_P-fluviatile_contig6.12482.1|Name=mRNA_P-fluviatile_contig6.12482.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig6:1587443..1591769- (Porterinema fluviatile SAG_2381)
GCTTCAGTCTCCAGAGAGATAGACACAACCGAGAGCATGGGGTGCACTTC
ATCAAAGGAGCAGGTCGCTGGAGGTGTCTCGGCGTCTGGGAAGGTCGCCG
AGATATCTGATCTCGGAGTTAAGGCTTCAGTCTCCAGAGAGATAGACACA
ACCGAGAGCATGGGGTGCACTTCATCAAAGGAGCAGGTCGCTGGAGGTGT
CTCGGCGTCTGGGAAGGTCGCCGAGATATCTGATCTCGGAGTTAAGGAGC
AAGCCACGACCGAAGCTGCGCCTGCTGCCGCCGACGCAGCAGCGGCCGTG
AAGGAGGTCGAGGAAGAGACCAAAGTGGAGGGGGAGACCACGGCGGCGGC
GGAGGAGGAGGAGACCAAGGCGGAAGTAGAGGCGGCGGTGGAGTTGGAGG
AGGTGGCTACCCCTGCCGCCGTCGACCCCGAGCAGATCGCTGCCCCGGCC
GTTGTTGTCGTTGACAACACAGGAGCAAGCCACGACCGAAGCTGCGCCTG
CTGCCGCCGACGCAGCAGCGGCCGTGAAGGAGGTCGAGGAAGAGACCAAA
GTGGAGGGGGAGACCACGGCGGCGGCGGAGGAGGAGGAGACCAAGGCGGA
AGTAGAGGCGGCGGTGGAGTTGGAGGAGGTGGCTACCCCTGCCGCCGTCG
ACCCCGAGCAGATCGCTGCCCCGGCCGTTGTTGTCGTTGACAACACAGGA
GATGCTCCGGTGATCACGAGCACCGACACTCCCGCCGAGATGCTCCGGTG
ATCACGAGCACCGACACTCCCGCC
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