mRNA_P-fluviatile_contig6.12380.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig6.12380.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI) HSP 1 Score: 111 bits (278), Expect = 2.770e-23 Identity = 100/259 (38.61%), Postives = 132/259 (50.97%), Query Frame = 2
Query: 92 MPRRKPSNP---TRREVTGDGIGGLPGQPSSLDYPAAATG-APSIPTGGDGRAR--------EAGDIDGDDNLREEGGGTWEDGDILAMEEAXXXXXXXXXXXXXXXXXRRKRHKGRHALAAANGKGPRDIGGLIVGSRTLPLQTTGSLKEIQGIRIVIPSPSARASFVRNARTARYAVGNDDENGDXXXXXXXXXXXXXCDAELGGGVLVEFGMGWGGAGDSCGQDIRAETMIRMDPEVFSAAADLDRDGFIAFTATH 832
MPRRK +NP +RR VTGDGIGG P P+ P A G +PS G G A AG ++G E GG E G ++ E+ XXXX RKR K H +A + G ++GSR L L GSL+ ++G+RIV+P P RAS VRNA R+AVG++DE+ + GV+VEF WG GD G+ +R+ M+R+ PE+F A DLDRDG++A TA
Sbjct: 1 MPRRKAANPIRTSRRNVTGDGIGGRP--PAPAPGPPADGGLSPSSGVGDGGGAVLPNSSATVVAGGLEGVG--AGELGGVGE-GTVMEDEDXXXXXDRVNPSSSG-----RKRQKIEHREGSAL------VVGDVIGSRHLALYPPGSLRALRGLRIVVPPPPGRASLVRNACVGRFAVGDEDED--------FATEERGSSQRVSTGVIVEFCEDWGVVGDPGGRAVRSGMMLRVTPEIFGAFEDLDRDGYVAITAAR 235 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig6.12380.1 >prot_P-fluviatile_contig6.12380.1 ID=prot_P-fluviatile_contig6.12380.1|Name=mRNA_P-fluviatile_contig6.12380.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=306bp MPRRKPSNPTRREVTGDGIGGLPGQPSSLDYPAAATGAPSIPTGGDGRARback to top mRNA from alignment at P-fluviatile_contig6:588967..599425- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig6.12380.1 ID=mRNA_P-fluviatile_contig6.12380.1|Name=mRNA_P-fluviatile_contig6.12380.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=10459bp|location=Sequence derived from alignment at P-fluviatile_contig6:588967..599425- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig6:588967..599425- >mRNA_P-fluviatile_contig6.12380.1 ID=mRNA_P-fluviatile_contig6.12380.1|Name=mRNA_P-fluviatile_contig6.12380.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1836bp|location=Sequence derived from alignment at P-fluviatile_contig6:588967..599425- (Porterinema fluviatile SAG_2381)back to top |