mRNA_P-fluviatile_contig6.12362.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12362.1
Unique NamemRNA_P-fluviatile_contig6.12362.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 4.970e-124
Identity = 188/235 (80.00%), Postives = 209/235 (88.94%), Query Frame = 1 
Query:    1 MRTTLASFAALWAGAAAFV-PVPTNTARPSSLG-MAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPEKKARYELSEVQHCRLAMFAIGGIATQSVLNGGAFPYVG 699
            M+TTLAS AAL  GA AF  P+P + A  S  G ++ A SKAIPFMPQPENLDG+ PGDIGFDPLGLS IDIDFSEFIVPGAAVMR EGVP KSPVDTLYWMRE+ELKHGR+AQLAVVGWILVDQG+RFPG++YAAI+QSV AHDPMV+SGNMT++LL VFLLEM+GGAA+FGAASGSGRQPG+FGLDP NLTSNP KKARYEL+E+QHCRLAM AIGGIATQ+VLNGG FPY G
Sbjct:    1 MKTTLASLAALVGGACAFTAPMPMHRAARSPAGALSMANSKAIPFMPQPENLDGTMPGDIGFDPLGLSKIDIDFSEFIVPGAAVMREEGVPSKSPVDTLYWMREAELKHGRVAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 237 bits (604), Expect = 9.180e-72
Identity = 131/223 (58.74%), Postives = 159/223 (71.30%), Query Frame = 1 
Query:   37 AGAAAFV---PVPTNTARPSSLGMAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPEKKARYELSEVQHCRLAMFAIGGIATQSVLNGGAFPYV 696
            AGA+AF    P+       SS+ M A KSK+IPF PQP  LDGS PGD+GFDPLGL+SID D++++IVP  A MR    P    VDTLYWMRE+ELKH R+A LAVVGW+ VD GLR PG KY  ++ ++ AHD MVS GNM VML    LLE+I GAA+F AA GSGR+PG+F LDP  L  +  K ARY+LSEV++ RLAM A  GIATQ+VL G +FPY+
Sbjct:   12 AGASAFQAASPLKGAVRSSSSMSMMA-KSKSIPFAPQPAALDGSLPGDVGFDPLGLTSIDFDWAKWIVPARASMRKGDEP--LVVDTLYWMREAELKHCRVAMLAVVGWLAVDMGLRLPGTKYMGLS-AISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPYL 230
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: A0A7S2RV11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV11_9STRA)

HSP 1 Score: 208 bits (530), Expect = 7.720e-61
Identity = 119/221 (53.85%), Postives = 143/221 (64.71%), Query Frame = 1 
Query:   43 AAAFVPVPTNTARPSSLGMAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSID-IDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPEKKA-RYELSEVQHCRLAMFAIGGIATQSVLNGGAFPYVG 699
            A AF P     AR ++  MAA KS A+PFMP+P  LDGS PGD+GFDPLG SSID +   + I P A++  +E      P+ TLYWMRE+ELKHGRI  LAV G+  VD G RFPG KYA +  SV AHD MV+SGNM  + LAV L+E+I   A+  AA GSGR PG+F LDP   T   EK+  R  L+EV H RLAM A  G+ TQ+V  G  FPY G
Sbjct:   14 AVAFAPAARRAARLTTT-MAAEKSAALPFMPKPSALDGSMPGDVGFDPLGFSSIDPVKLPQIIPPAASMATSE------PLPTLYWMREAELKHGRICMLAVTGFAAVDMGFRFPGAKYADLT-SVTAHDAMVASGNMGFLFLAVALIELISSVALVEAAQGSGRVPGDFALDPMKFTQKNEKETERLRLAEVTHARLAMLAFSGMVTQAVAVGDKFPYQG 226
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.050e-55
Identity = 101/197 (51.27%), Postives = 131/197 (66.50%), Query Frame = 1 
Query:  103 AAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPEKKARYELSEVQHCRLAMFAIGGIATQSVLNGGAFPY 693
            AAKSKA+PF+  P+ LDGS P D+GFDPL LS ID DF+  +VP       +    ++ +  L W RE+E+KHGR A LAV+GW+ VD GLR P  KYA    +V AHD  V SG+MTV LLA+  LE++ GA ++  + GS R  G+F  DP  L  +P K ARY++SE+++ RLAM A GGIATQ+VL  G FPY
Sbjct:   32 AAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVP------TKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGY-NAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 190 bits (482), Expect = 2.400e-53
Identity = 102/207 (49.28%), Postives = 140/207 (67.63%), Query Frame = 1 
Query:   82 PSSLGMAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTS-NPEKKARYELSEVQHCRLAMFAIGGIATQSVLNG-GAFPYV 696
            PS+L +   KSK++PF+  P +LDGS  GDIGFDPL LS I  DFS+ +VP     +  G P  + + TLYWMRE+E+KHGR+A LAV+G + VD G R PG  +A +  ++ AHD MV+ G M ++LLA    E++GGAAV+ AA GSGR+PG+F LDPF+L   +P +K  ++  E+++ RLAM  I GI TQ+ L G   FPY+
Sbjct:   35 PSALHL---KSKSLPFLDAPGSLDGSFAGDIGFDPLRLSEIPFDFSQLVVP----RQFSGRPSSATLATLYWMREAEVKHGRVAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYL 234
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.090e-49
Identity = 114/239 (47.70%), Postives = 137/239 (57.32%), Query Frame = 1 
Query:    1 MRTTLASFAALWAGAAAFVP---VPTNTARPSSLGMAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPE---KKARYELSEVQHCRLAMFAIGGIATQSVLNGGAFPYVG 699
            M  TLA   A+ A A+AFVP   +P   +  S + M A KSK++PFMPQP  LDG+  GD GFDPLG       FS FI                P+D   ++RE+ELKHGRI QLAVVG+   D G R PG ++A    S+ AHD  V++G M  +LL V   E I   AV     GSGR PG+FG DP NL S PE   KKA  EL E+ HCRLAM A GG+ TQ+VL    FPY G
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLG-------FSNFI----------------PLD---FLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVA--SIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 177 bits (449), Expect = 5.080e-49
Identity = 94/203 (46.31%), Postives = 130/203 (64.04%), Query Frame = 1 
Query:   85 SSLGMAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPEKKARYELSEVQHCRLAMFAIGGIATQSVLNGGAFPY 693
            +SL    AKSK++PF+  P  LDG+ PGD+GFDPL  + +D + +E I+P  ++   E +P       +YWMRE+ELKHGR+  LA+VG++ VD G+ FPG +Y  ++ S+ AHD MV+SGNM  MLLAV +LE++    V  AA GSGR+ G+F  DP   T   +    +E +E+QH RLAM A  G+ TQS L    FPY
Sbjct:   23 TSLTRCDAKSKSMPFLECPAALDGTLPGDVGFDPLRFTDLDWNMAEVIIPAKSISATESLP------MVYWMREAELKHGRLCMLAIVGYLTVDAGIHFPGARYEGLS-SLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.840e-47
Identity = 108/259 (41.70%), Postives = 142/259 (54.83%), Query Frame = 1 
Query:   13 LASFAALWAGAAAFVPVPTNTAR-PSSLGMAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSI-DIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNL-TSNPEKKARYELSEVQHCR-----------------------------LAMFAIGGIATQSVLNGGAFPY 693
            LA  A   AGAAAF   P    R P  +      SK++PF+   +NLDG+  GD  FDP+G S+I D D+S  +VP       EG+       TLYWMRE+ELKHGRI  LA +GW+  D G RFPGE Y+ I+ ++ AHD MV +GNM  +L  +F++E++ GAA++ AA GSGR PG++G DP  L   N  KKA Y L E+++ R                             LAM    GI TQ+ L G +FPY
Sbjct:   24 LACLALAIAGAAAF-QAPRKAGRTPVRMQAREGMSKSVPFLKTNKNLDGTMVGDADFDPMGWSNIEDFDWSGIVVPAWFNKEREGI------STLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.500e-44
Identity = 100/230 (43.48%), Postives = 129/230 (56.09%), Query Frame = 1 
Query:    4 RTTLASFAALWAGAAAFVPVPTNTARPSSLGMAAAKSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPEKKARYELSEVQHCRLAMFAIGGIATQSVLNGGAFPY 693
            RT LA   AL A  A     P       ++ M AAKS AIPF+P+P  LDGS  GD+GFDPLG+S                       +  P+D   ++RESELKHGRI  LAV G+   D G + PGE++     S DAH+  VS+G MTVM  A+F LE I G A+  + +GSGR  G++GLDP  L+  P+K A  ++ E+ H RLAM A  G+ TQ+VL    FPY
Sbjct:   12 RTVLALALALLAAPAVAFQGPVRATHRGAMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVS-----------------------DWMPLD---YLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVA--SADAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213
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BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Match: A0A6J4B0A4_9STRA (Fucoxanthin chlorophyll a/c protein 8 n=2 Tax=Chaetoceros gracilis TaxID=184592 RepID=A0A6J4B0A4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.520e-42
Identity = 98/206 (47.57%), Postives = 127/206 (61.65%), Query Frame = 1 
Query:  109 KSKAIPFMPQPENLDGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWMRESELKHGRIAQLAVVGWILVDQG----LRFPGEKYAA--IAQSVDAHDPMVSSGNMTVMLLAVFLLEMIGGAAVFGAASG-SGRQPGEFGLDPFNLTS--NPEKKARYELSEVQHCRLAMFAIGGIATQSVLNGG--AFPY 693
            +SKA+PF+P+  NLDGS PGD+GFDP  LSSI  DFS FI P       +G+P      TLYWMRE+ELKH R+A LA  GW+  D      LRFPGE Y+   I  + +AH+ +VS G+M  +LLAV  +E   GA +   A G S R+ G+F LDP +     + E+  R +  E+ + RLAM A GG+ATQ+ L GG  AFPY
Sbjct:   47 RSKAVPFLPRAVNLDGSLPGDVGFDPFYLSSIPKDFSGFIQPPQ--WEEKGIP------TLYWMREAELKHCRVAMLAWFGWLATDGAFGVTLRFPGEIYSVENIPTAYEAHNALVSQGSMGFLLLAVGFIEFCTGAVLVEVAKGASDREAGDFKLDPLSFLKGKSEEEIKRMKTREIANGRLAMLAFGGVATQTALEGGNHAFPY 244
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3A4_ECTSI4.970e-12480.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CGA6_9STRA9.180e-7258.74Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S2RV11_9STRA7.720e-6153.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7UAI7_9STRA2.050e-5551.27Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A6V1NRI4_HETAK2.400e-5349.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FWB9_ECTSI2.090e-4947.70Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
F0YCE3_AURAN5.080e-4946.31Uncharacterized protein LHC26 n=1 Tax=Aureococcus ... [more]
A0A6U4L863_9STRA2.840e-4741.70Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S869_9STRA1.500e-4443.48Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A6J4B0A4_9STRA5.520e-4247.57Fucoxanthin chlorophyll a/c protein 8 n=2 Tax=Chae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:393560..398861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.6
Seed ortholog evalue1.7e-101
Seed eggNOG ortholog2880.D7G3A4
Preferred nameLhcr11
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2DDP1@1,2S5ND@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-07_005670.1
Exons4
Model size1527
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12362.1prot_P-fluviatile_contig6.12362.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 393560..398036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.5989628-CDS-P-fluviatile_contig6:393559..3937811622816976.5989628-CDS-P-fluviatile_contig6:393559..393781Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 393560..393781 +
1693570657.0388668-CDS-P-fluviatile_contig6:393559..3937811693570657.0388668-CDS-P-fluviatile_contig6:393559..393781Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 393560..393781 +
1622816976.6090233-CDS-P-fluviatile_contig6:395901..3960221622816976.6090233-CDS-P-fluviatile_contig6:395901..396022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 395902..396022 +
1693570657.30271-CDS-P-fluviatile_contig6:395901..3960221693570657.30271-CDS-P-fluviatile_contig6:395901..396022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 395902..396022 +
1622816976.6194737-CDS-P-fluviatile_contig6:396549..3967471622816976.6194737-CDS-P-fluviatile_contig6:396549..396747Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 396550..396747 +
1693570657.315606-CDS-P-fluviatile_contig6:396549..3967471693570657.315606-CDS-P-fluviatile_contig6:396549..396747Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 396550..396747 +
1622816976.6307487-CDS-P-fluviatile_contig6:397875..3980361622816976.6307487-CDS-P-fluviatile_contig6:397875..398036Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 397876..398036 +
1693570657.326741-CDS-P-fluviatile_contig6:397875..3980361693570657.326741-CDS-P-fluviatile_contig6:397875..398036Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 397876..398036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.6445355-UTR-P-fluviatile_contig6:398036..3988611622816976.6445355-UTR-P-fluviatile_contig6:398036..398861Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 398037..398861 +
1693570657.3396087-UTR-P-fluviatile_contig6:398036..3988611693570657.3396087-UTR-P-fluviatile_contig6:398036..398861Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 398037..398861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12362.1

>prot_P-fluviatile_contig6.12362.1 ID=prot_P-fluviatile_contig6.12362.1|Name=mRNA_P-fluviatile_contig6.12362.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=234bp
MRTTLASFAALWAGAAAFVPVPTNTARPSSLGMAAAKSKAIPFMPQPENL
DGSSPGDIGFDPLGLSSIDIDFSEFIVPGAAVMRAEGVPEKSPVDTLYWM
RESELKHGRIAQLAVVGWILVDQGLRFPGEKYAAIAQSVDAHDPMVSSGN
MTVMLLAVFLLEMIGGAAVFGAASGSGRQPGEFGLDPFNLTSNPEKKARY
ELSEVQHCRLAMFAIGGIATQSVLNGGAFPYVG*
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mRNA from alignment at P-fluviatile_contig6:393560..398861+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12362.1 ID=mRNA_P-fluviatile_contig6.12362.1|Name=mRNA_P-fluviatile_contig6.12362.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5302bp|location=Sequence derived from alignment at P-fluviatile_contig6:393560..398861+ (Porterinema fluviatile SAG_2381)
ATGAGAACCACTCTTGCTTCGTTCGCCGCCCTCTGGGCAGGCGCTGCCGC
GTTCGTTCCCGTGCCTACAAACACCGCCCGCCCGAGCTCCCTCGGCATGG
CGGCTGCCAAGAGCAAGGCTATCCCGTTCATGCCGCAGCCGGAGAACTTG
GACGGGAGCTCGCCGGGGGACATCGGCTTCGATCCGCTCGGCCTTTCGTC
GATCGACATCGATTTTAGCGAGGTATGCGGCCGTTTTGTCTTGGAAGGTC
CACTCTCGCTCCCCGACAAAGATGCGCTCTCGTTCTCCCCCAACAAACGA
TCTCTGATTCCATGTTCCACTCAGTCGAAAGCTCTACGGCGGGTGCCTTC
GAAGCAAGGCAGGTGGCGCGGTTTGTAAGCGGGAGAGTGCCTCGTGTTCA
GCCTGTGCCCCTCGCTACTTTTCGTGCGTTGACTAGGCTGAGTCCCGGCG
TGCGCCCAACGGCGTGCAAGCGTGCTGCCTCATTGATCTGTCCTTGCACA
AAGGGAAGGTGGCCTGTTCCTGGTTCAAAATGGAGCCGGGAAGGGTGCCG
GGGATGTCCTAAGCATGTGCAGCCTCTGCGACTCACACGGCCAGTGACAC
ATCAGTGGCGTGTGCATGAGGGTACACGGCTTTGCAGATCACGCCCGCGT
GCACATGCAGCAGCAGCAGCCTGCGGTCTTGATTTCAAAATTTCGACACA
AATACGAAGTACATGACAACATCCACGTCACCTCTATGATTTAATGTACT
CCGACTATGTTTTTCCCATTGCGGCCAATTCCAACTTTTCCTCAACACGT
TCAAACCCTCCAAACGTGGGCAGGTACCGAGCTCACAATTCGTTGGCCTC
TTCCGAAGGCAGATTTTGTCGGGCGAAACGTACAATAATCGCACAGAGTC
GTCGAGAGTCGAGAGTGAAACATGTTTTGTCGTTGGACGGGTGCAAACTT
CCGCTCGTGGTGGGTGGGGGGGGGGGGGCATCGCGATAGGCACTTGGATA
TTGTTTGGGAGAAGAAGCTGAGATAGATCCATTTTTTGTACCACACTCAT
GAGTCCGCATGTGCACCCATCTCCAAAATATTAGAGCATTCTGTACACTA
GATGACGCTATTCGAAATTGTATCCTAGTTGTGGACGAAAAGGGTACGGA
GTGTCATCGTTGCGCCCCCACCAAAAGCCGGTCGCGCCGGTGGTGTAGTA
GAAATCCCCGTAACCTTCTAGCAGGCAAGGTCATGGGTTCGAATCCCAGC
GTGAGCGACTTTTTCTCACGGAACAAGTTTATTCTTGCGTTCGTGCCGGT
GGATAGCGCCTGTTGCGTGGTACACAGCGGGAAAGAGGTGACGTAAACTC
AATAAAAACTTGAAGGTTGTGTATTATTTGTACAGTATTGAGAGTTGTAC
TAAACGTACTCACTCAGTACAGTATTCCATCTGAATATTGTACTCTGCAT
AGTACAGTATGGAGACATGTACTAAACGTGACATTACATGCAGTACGGTA
TCGAGAGCTCTACTAACCGTACTTTGATTATGTTTTAGTACAGTATTAAG
GGCTGTACTAAACGTACCGTTTACGGGCAGTATCTTTCGATCGCACTGTA
CAAAGCTCCGTACATCATCGGCCCAAATCCCGTACAAAACGCGTAGTACA
GTCCAGTATCGAGAGATCCGCTCAACGTACTACTTTCTGGGAGTATTTTT
AGATCGTACTGTACTACGCTTAGTACAGTTTCGGCCCAAATCCCGTACCA
AGCGCTTAGTACAGTCCAGTATGGAGATATCGCCAGTAAATACTGGCCAG
TATTACTGAAGCCTACTGTACTACACACAACCTTGAAAGCTTTCTGTGAG
CACCGCAGGATAGGGTGTGGTTGCCTCAGGGAGAGGAAGCTTCTGTGCGA
CCACGGTTTAGATGTTCAGGCAAGATGCCCTGGGTGGCAAGGCGCCCTTC
GAACGCTGGAAATACATGTGATGACTGACGAAAAAATATACTGGCAGGCG
TTGTCGCTCAGTTTTTCAACCAGATGCCACTTCTTTCGAAATGTCCGTTC
CCGAAAAATCGCGGGTTGTCTGCTGTGGCCTTACTGTAGCATCTCCCGAA
GCTTGTGGCCGGCACTTGCTGGGGCTGAAAATATTCTTGTCCGAATGCAC
CGGCATCCAATCCACAACTTGTCAAGGGTAACAAGCGGCAACGAACATAA
ATCCGGGTGTATCTTCGCCATTCACCACTTCCATCCATAGTTTATTGCTC
GATTTCATCCTCCATCTGCACCCCTCTTTTTCTTTTTCGCAACCCCCCCT
CGACGATTGCCCTCTGCTGCCGCTGCGATCCGGCGGATGCAGTTCATCGT
GCCGGGGGCGGCGGTGATGCGCGCAGAAGGTGTCCCGGAGAAGTCGCCGG
TCGACACCCTCTACTGGATGCGCGAGTCGGAGCTCAAGCACGGCCGCATC
GCGCAGCTCGCCGGTCAGTCAGTCAGTCCGTCCTCTCAGTCTTTCGATCG
ACAAGCCGGCTGTTTGTGTGGAAGAAGTGATCGTCGATCTCAATGGAGGA
ACAATTTCAGAACAGTCATGACTCACGGTGCTCCGTTGGACTGTTTTGTT
CACGGTAAAGTCAGTTTTCATGCGGTCCCTTCTTTGTCGGCGGGGGACGT
TGCGTGTCGCAAGTTGCGCTTTCCCCGTGCCCATTGCCACACATGTTTCC
CGGCACAGCAATTTTTGGCATTGTCGCCCCGTACTCACAACGAAAGCGGT
CACCGAGACTGAGGTTCGATTTTCTCGCCCATCTGAGAAACGCTGTTGTG
GTCACACTGGAAATGGTTTGCCTTTTCCTCGTCTGATTTTTGGGAAGACA
AGCCGGCCGGAGCCAAGATGAAAACGTTATCACAGCATTTGCGCGAAGCG
AGTTAAAACCAATTTCTCGGACTTACGAAAACATCCACGCACCATCTGCT
CCATGTTTTGCATTTTGCTCCCCGTATGTCTCTTTCTCAGTGGTGGGCTG
GATCTTGGTGGACCAGGGCCTACGTTTCCCCGGCGAGAAGTACGCGGCGA
TCGCGCAGTCCGTGGACGCGCACGACCCGATGGTGTCGTCGGGGAACATG
ACGGTCATGCTGCTGGCGGTGTTCTTGCTGGAGATGATCGGCGGGGCGGC
TGTCTTTGGCGCGGCCAGCGGGTCCGGACGCCAGCCAGGTTAGTGTGGCT
GGACATTGGGAAGAGGCAAAATGGAAATAAGTGGCTTCTACTCGACTCCA
AACACGCCTTTCCTTTCCCATCGTAGAAGAGATAGGCCCAGGATAAATTC
CCTTTGTGAGTCCAACGCGAGTGATCTGGCGGAGGGAGGGAGTGAGAGAT
GCTTACATGTATTCATGCGCATTCTCGGATACTATAGTTGTGTGCGGGGT
GATTATCCCTCTTGCAGTAGGATGTATTGCCCTCTGCGGCCAGTCGGTCG
ATAGTCGTGTATATTTCTTCGATTTCATGACGCAAACACCTGGTAGGGTT
CCTCCATCTCAGGTTCATTGTTCACTCACGGAGTAGCCCCGGTTCCCCTG
CTAAGCAATCGAGGAAACACTCACTTTGAAGGCGAGAGTAACGTGTGTGA
TCATGGTGGTGTGGGTGCCTCTCACACCTGCTCAGGTCCCGGAACGCCGA
AAGCAGCCGGCTCACGGGAGACGTACCCTGACGTCGCTAGGTGGCCACCA
AGTGCTCCCCTCCCTCGTCGCATACCATTTGTCGAGAAAGGGGAGACAAA
GCGGTTCATGGGAGCGGGTGCCCTCTTTCCTTGTCGACCTTTCGTCCGCT
GGACCGGGCCGGAAGGCCGGGAAAATAACTTCCGGCATTGCGGTTGGAAG
TATAGGATTTATATCGCCCAGGTTGTTAACGAACATATAAGCAGCAGGGA
GATGCCGGCCCGGCAGAGCACGGTTTCTAAGGAAATATGTCTCGCGTTCT
CGCAGCCGCCGCAATCCGGCCTCGGAGTGAATCTCTCCGATACGGCAGCG
TTCAACTCTGGTCCAAACAAAGCCCTTGGGCCGAAGTTGCGCCTGCGCAT
TCGACAAGCGTTGTTGAGCCTTCCCTCGCGACCGTGAGTACATCCCCTGA
TATTGTTGACACGGCCCCTCCCGGGGACTAGAGCTTGTCCCTCCCACATT
CGACTAGCCTGTCGAAGCGCTACTCCTTGCTCACCTCTGTTCCTCTCTAC
TTCGTCGTTCGCTCGCACGCTCTAAACTTTGCCGAAATTTTCCAGTTCTC
TTCGTGCTTGACTCTTGCTTTGTTTGTCGTGTCCCCCCCCCCCTCCCCGG
TGCGTGCCTTGTTCAGGGGAGTTCGGGTTGGACCCGTTCAACCTCACCTC
CAACCCCGAGAAGAAGGCAAGATACGAGCTCAGCGAGGTGCAGCACTGCC
GGTTGGCGATGTTCGCCATTGGCGGCATTGCCACCCAGTCCGTCCTCAAC
GGCGGCGCGTTCCCCTACGTCGGCTGATTTTCCGTTTTTTCGAGTCCTCG
CGTTATTCCTGAGTGTGTAAGTTTCCACCTGCACTCTTTGGAGCCTGAAG
TAACGAACTTTTGCAGCACAGCCAGCGGCTCTTCTTTTTGTGGTCTGGTG
TGTACCGCAGCCTGTCGCGTTGAGGGGTGGGTGTGCAGAGATGTCAGTCA
CCACGCCCAGCGCTTCTTGGGTGAACCCGTGTGCGACGCGCACGGCACAT
AAGCCTGCGGCGGCGGCGGTCACACCGTCGGCTCGATAAGCAGCGTCTTT
TCCCGTGCTACAGACGCGATACGCGTCTGCCTGGCGGGGATTTGTCTTTT
TATCGGCGCATGCTGCAGCCCTCCTCCCGTGTCTGTTGGGAATTTACTCG
TTTGCAACCCACTTTGCCGTGTGTGTGTTGGCGTCACGTTTTCGTTATTT
TTTTGCCTCTCTTGTATAAAGCTCGCGATAGATCTCTCCGGTTGTGTGTG
TGTCGCTAGCTTCGGAGAGCGAAAGCCAAGTCATCGAAGGGAGCGCAAGT
GTTTCCTAGATGTGCACGAGCTCTCGATTGTGATTCGCGGGGCTCCTAGT
ACGTGAGGCGTACCTGTTGATTCTTTCGGAAGGCGGAGAAGCGTAATGGT
GCTGATGCAGAGAGGCCGTCGCGAAGTCGCGTCCCTCATTATGGCATTCT
GGCCTTTAGAGCTTTTTAAATGCGCGTCGGGATTGCAAACTGCTCGCGTA
TACTACACAACAATGATAACGTGCTGTCAACGAAGTCTAGTTCCCGCGGT
ACTTCACAGTTCAACAGATGTCGGTCACACAACGAAACGCGCCCCCCTTG
CC
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Coding sequence (CDS) from alignment at P-fluviatile_contig6:393560..398861+

>mRNA_P-fluviatile_contig6.12362.1 ID=mRNA_P-fluviatile_contig6.12362.1|Name=mRNA_P-fluviatile_contig6.12362.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1404bp|location=Sequence derived from alignment at P-fluviatile_contig6:393560..398861+ (Porterinema fluviatile SAG_2381)
ATGAGAACCACTCTTGCTTCGTTCGCCGCCCTCTGGGCAGGCGCTGCCGC
GTTCGTTCCCGTGCCTACAAACACCGCCCGCCCGAGCTCCCTCGGCATGG
CGGCTGCCAAGAGCAAGGCTATCCCGTTCATGCCGCAGCCGGAGAACTTG
GACGGGAGCTCGCCGGGGGACATCGGCTTCGATCCGCTCGGCCTTTCGTC
GATCGACATCGATTTTAGCGAGATGAGAACCACTCTTGCTTCGTTCGCCG
CCCTCTGGGCAGGCGCTGCCGCGTTCGTTCCCGTGCCTACAAACACCGCC
CGCCCGAGCTCCCTCGGCATGGCGGCTGCCAAGAGCAAGGCTATCCCGTT
CATGCCGCAGCCGGAGAACTTGGACGGGAGCTCGCCGGGGGACATCGGCT
TCGATCCGCTCGGCCTTTCGTCGATCGACATCGATTTTAGCGAGTTCATC
GTGCCGGGGGCGGCGGTGATGCGCGCAGAAGGTGTCCCGGAGAAGTCGCC
GGTCGACACCCTCTACTGGATGCGCGAGTCGGAGCTCAAGCACGGCCGCA
TCGCGCAGCTCGCCGTTCATCGTGCCGGGGGCGGCGGTGATGCGCGCAGA
AGGTGTCCCGGAGAAGTCGCCGGTCGACACCCTCTACTGGATGCGCGAGT
CGGAGCTCAAGCACGGCCGCATCGCGCAGCTCGCCGTGGTGGGCTGGATC
TTGGTGGACCAGGGCCTACGTTTCCCCGGCGAGAAGTACGCGGCGATCGC
GCAGTCCGTGGACGCGCACGACCCGATGGTGTCGTCGGGGAACATGACGG
TCATGCTGCTGGCGGTGTTCTTGCTGGAGATGATCGGCGGGGCGGCTGTC
TTTGGCGCGGCCAGCGGGTCCGGACGCCAGCCAGTGGTGGGCTGGATCTT
GGTGGACCAGGGCCTACGTTTCCCCGGCGAGAAGTACGCGGCGATCGCGC
AGTCCGTGGACGCGCACGACCCGATGGTGTCGTCGGGGAACATGACGGTC
ATGCTGCTGGCGGTGTTCTTGCTGGAGATGATCGGCGGGGCGGCTGTCTT
TGGCGCGGCCAGCGGGTCCGGACGCCAGCCAGGGGAGTTCGGGTTGGACC
CGTTCAACCTCACCTCCAACCCCGAGAAGAAGGCAAGATACGAGCTCAGC
GAGGTGCAGCACTGCCGGTTGGCGATGTTCGCCATTGGCGGCATTGCCAC
CCAGTCCGTCCTCAACGGCGGCGCGTTCCCCTACGTCGGCTGAGGGAGTT
CGGGTTGGACCCGTTCAACCTCACCTCCAACCCCGAGAAGAAGGCAAGAT
ACGAGCTCAGCGAGGTGCAGCACTGCCGGTTGGCGATGTTCGCCATTGGC
GGCATTGCCACCCAGTCCGTCCTCAACGGCGGCGCGTTCCCCTACGTCGG
CTGA
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