mRNA_P-fluviatile_contig6.12320.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12320.1
Unique NamemRNA_P-fluviatile_contig6.12320.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:27230..28398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.684649-CDS-P-fluviatile_contig6:27229..273111622816965.684649-CDS-P-fluviatile_contig6:27229..27311Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 27230..27311 +
1693570624.9032948-CDS-P-fluviatile_contig6:27229..273111693570624.9032948-CDS-P-fluviatile_contig6:27229..27311Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 27230..27311 +
1622816965.6961617-CDS-P-fluviatile_contig6:28316..283961622816965.6961617-CDS-P-fluviatile_contig6:28316..28396Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 28317..28396 +
1693570624.912254-CDS-P-fluviatile_contig6:28316..283961693570624.912254-CDS-P-fluviatile_contig6:28316..28396Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 28317..28396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12320.1prot_P-fluviatile_contig6.12320.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 27230..28396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12320.1

>prot_P-fluviatile_contig6.12320.1 ID=prot_P-fluviatile_contig6.12320.1|Name=mRNA_P-fluviatile_contig6.12320.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
CTIFGFRLHTSRRSVLDRVFAWPFVKVEYTSATCPFFSAAPLLIGRDPCC
FSDG
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mRNA from alignment at P-fluviatile_contig6:27230..28398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12320.1 ID=mRNA_P-fluviatile_contig6.12320.1|Name=mRNA_P-fluviatile_contig6.12320.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1169bp|location=Sequence derived from alignment at P-fluviatile_contig6:27230..28398+ (Porterinema fluviatile SAG_2381)
TGCACGATATTCGGATTTCGGCTGCATACTTCCCGTCGCAGTGTGCTTGA
TAGGGTCTTCGCTTGGCCCTTTGTAAAGGTAGGTAAGTCGCTCATCGGTC
GTAAACCAAGGAGAACAGTTTTATTCAGGCTACAGCGATTTTCCGTGGGT
TTGATTTTCAATTAGTTTTGAAATTCCTTATTTTACAATTATCAGGGTTG
GGTCTCAGATCCTATTTCCAGCAAAGATGAGGTTCAGTCAAGATGAGGCG
GCCGCCGCGCCGCCGCGCCTTCGCCGAGCGCTTTTTCAGGTTCGGGTGTT
GGCGCCGCCGAGCGTCTTGGCGCCTTGGCGGTCTCGCCGTATTCGAGTGT
CCGCGCGTTCGTCATCTTCGGTTGTTGGCGCCGCCGCGCGTCTTGGCGCC
TTCTTGGTCTTGCCTTCTTCGGGTCTGAACCACACGTCTTTTGGCTGTAA
ATCTCCCACCTCTACGTGTTGCACGGCGACTTCCCTTGATACGTTGTGAA
GGCAGCGAAACCAGCAATAGATCGTGTCACATCTCTACCTGCTTGACAGC
GGAATTATAGGCTACGGAGGAAGCTCATGTGTCGTTTGTCCCGCTCCATC
TTGGTGCTGCTGCGCGGTGCGGCCGATGTAGTATGTGAATCGAAAAGGCT
CCGTTGAAGGTGTGCGTTGCCCTCCAGGTATGTATCTGATTTCGACTCTC
CGTTCAAGCGCAAGGACGAAGGGAACCCTAAACCAATCTCGAGAAGCCTT
TCCGTGAAAAAGGCACGCTGATACGGTCCTTTCCGTACGTGTGTAGAGTA
TGCACTCCCGTGCAGGCAGGCATCCGAAACACATACTTTCGAACTGCAGT
TGCGCTTTCGGTGACTCGCCTTTGTGCTTCCGTGATTTGTTGTTGTGTGT
CGGCTTACTTTTCATGGAGAGCAACTCCTGGTCATACTGTGTATGCCAAC
AGTGATCGGGTACGTGTAGTTGGGTCATGTAAACGCCGCAGTGTACCCTC
TCCACTTGTATTCCTCCTGACATTCAGCTCTCCCTCTCTTGTAACGCTCT
CATTCTCCCGCCCTTTTTCTCGCTCTCCGTCGCAAAGAGTACACCAGCGC
GACCTGTCCGTTTTTCAGCGCGGCTCCGCTGCTGATTGGCAGAGATCCTT
GTTGCTTTTCCGACGGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig6:27230..28398+

>mRNA_P-fluviatile_contig6.12320.1 ID=mRNA_P-fluviatile_contig6.12320.1|Name=mRNA_P-fluviatile_contig6.12320.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig6:27230..28398+ (Porterinema fluviatile SAG_2381)
TGCACGATATTCGGATTTCGGCTGCATACTTCCCGTCGCAGTGTGCTTGA
TAGGGTCTTCGCTTGGCCCTTTGTAAAGGTAGTGCACGATATTCGGATTT
CGGCTGCATACTTCCCGTCGCAGTGTGCTTGATAGGGTCTTCGCTTGGCC
CTTTGTAAAGGTAGAGTACACCAGCGCGACCTGTCCGTTTTTCAGCGCGG
CTCCGCTGCTGATTGGCAGAGATCCTTGTTGCTTTTCCGACGGGAGTACA
CCAGCGCGACCTGTCCGTTTTTCAGCGCGGCTCCGCTGCTGATTGGCAGA
GATCCTTGTTGCTTTTCCGACGGG
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