mRNA_P-fluviatile_contig58.12207.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig58.12207.1
Unique NamemRNA_P-fluviatile_contig58.12207.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig58.12207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig58contigP-fluviatile_contig58:357030..360417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size616
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig58.12207.1prot_P-fluviatile_contig58.12207.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig58 357030..360151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.3296936-CDS-P-fluviatile_contig58:357029..3573411622816946.3296936-CDS-P-fluviatile_contig58:357029..357341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 357030..357341 -
1693570568.3537705-CDS-P-fluviatile_contig58:357029..3573411693570568.3537705-CDS-P-fluviatile_contig58:357029..357341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 357030..357341 -
1622816946.3413432-CDS-P-fluviatile_contig58:360115..3601511622816946.3413432-CDS-P-fluviatile_contig58:360115..360151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 360116..360151 -
1693570568.3632228-CDS-P-fluviatile_contig58:360115..3601511693570568.3632228-CDS-P-fluviatile_contig58:360115..360151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 360116..360151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.353354-UTR-P-fluviatile_contig58:360151..3604171622816946.353354-UTR-P-fluviatile_contig58:360151..360417Porterinema fluviatile SAG_2381UTRP-fluviatile_contig58 360152..360417 -
1693570568.3730361-UTR-P-fluviatile_contig58:360151..3604171693570568.3730361-UTR-P-fluviatile_contig58:360151..360417Porterinema fluviatile SAG_2381UTRP-fluviatile_contig58 360152..360417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig58.12207.1

>prot_P-fluviatile_contig58.12207.1 ID=prot_P-fluviatile_contig58.12207.1|Name=mRNA_P-fluviatile_contig58.12207.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=116bp
MIGSEGTTKEGKALRKARNSHECFHATNFECGRASVTWPASKSCDEVGGG
QDAPAVSDPGSCGLRSLLLETNHVHSTLAASLSSSFYDGGRNESESNRER
KQESKTKKERAAAGSA
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mRNA from alignment at P-fluviatile_contig58:357030..360417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig58.12207.1 ID=mRNA_P-fluviatile_contig58.12207.1|Name=mRNA_P-fluviatile_contig58.12207.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3388bp|location=Sequence derived from alignment at P-fluviatile_contig58:357030..360417- (Porterinema fluviatile SAG_2381)
AACGAGACCAATGCTCTGTGATTCCTTACTGAGCACAAGCAACGCACGCA
AGCGATAGCAGGTGAAGGACGAAGGGAGAGCTCACATTAGTTGGGCGTTG
TGAGCTTTGAGCCGCGGCGTTGCTCAGTCAGTCGACGGCGGTGTGAGCTT
CTTGGGTTCGCCGACGGGTGTTGTGTGTCTCCGAGAAATTTCGGATCTAT
CACCTGTGCAACTTGACTTGCACAGAGCGCGGGAGGATCAGGCGCACCGC
GTTGACGAAGGAGACGATGATAGGGTCTGAGGGCACAACTAAGGAGGGAA
AGGTATGAGGCACAGAGAGAGGGAGAACGTGTGTGTGTGTCTGTGGCGTC
GCAGCGTGCACCAAGCTGCAAACACACGAGCCGAGGGAGAGGGGAATGGC
GAGGGAGGAGGAAACGGGTTCTTTGGTGCAATCAAAAAAGCTAGCGTGTG
TGTACATGATGCAGCCCCGATCGCACCGAAGACACCTCGGCCCAAACTGT
CTTACGCTGTGGTTGTGCAGTTGTTGCGGTGGAATCCTTGCACACCGGGC
CCTCCCTAGCTCACCCTGTCATCCGACCGGTGACAACCAGAAGGTGTATA
GGGAAATTCTTATATTTTCAGACGCCGGCTTTCGTTCGGTCCGAATGTAC
GGACACAAACTGTGAGGACACAGCGTACACCCAACAAACTGGCTGTAGCT
ACACATGATCGCAGGCTATTTTTCCTCCCCCTCTAAACTCCTGTGTCTGA
ACGTTTGCATGGAGTGGCAAGGGGATCTCCTCTCTTGTTGCAATCATTTG
CCCGTTCTAGCTTGGAGTTGTTGCAAACTTTCACGAACGCTGGCTCTTTG
TCCTCTCTCTCCCGATGTTACCGCAACCTTGAGGTACTGACTGTATGGCG
CATACCATGTACGTCCGTCCTATCACTCTCTCTGTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCCGCCGGGGCCT
TGCAAAGTTGAGAAGAGAAAGGAAGAGAGGGAGAGACTAAAAAAACAGTG
GAGTCTCCACAGGTCCAGTCTATTCATAAAGATGAAAGATAAACATGGCT
CTTTTCGAAAATATCAACATGCTCTCCATTTTTTACCGAACGACGCAGAA
GCGCAGGGGGCGGGCCGCGGCAGGTTGGGGTACCAACGGTTCTGATACAC
GTACGGTAGGGGCTGCGAGAGACCACCTGCCACGGGAATGCGGCGGGCAT
TCAGCCCTACAGCTTAGCTTGCGCACCCACTCCTCATTGCCGGTCGTGCG
TGCTCGTGAGAGAGCGATGGAAATGGGAAATTGTGCCCGGCTGTCAATTG
ACCCGCAACCAGGCAGACATTAATTAACACGCAGAGAGGGAGACACACTC
TCGTCTTACTCTTGCCGCCGCCAACACACGAGATCTATTCCGCCCGGCAG
CATGCTGGCCTGTCAAGCAGGCATGTTTTCCTTGCTCCGATGAGCGAGTG
TGGCGGGGCGGGGGCAGTTATTGTTGTGTGCATGTCCACGAGGAGACCGC
GAACAATACGCGACTTTCCACCTCGCCGACAAACACTTCCAGCTATTGAT
AAGTGCAGCTGTTTTGCTATCACCGTGCTTCTTCTCAATCGGAACGAATT
CTTGGACGTTTGTGTGTCTCTCGGTACCTCCACTGGAAAGGGTGCCTACA
TTCGTTTGTCATTCCCTCTCGTCGCCGCTCTTCTCCCACGATTTTGCGGA
ACCGCTTGAGGTGCCGAAAAAATATCACGGAGCTTTTGTGGGTGCGGCTG
TACAAACTCGCATGGCCGTCACCCTGTGGTATACGGAGTACCATTTAGAT
GCACGAGCAGTCAGTTACTTACAGCACGAAAAACAATACATGCTAGTATT
CAACACGTCATAAGGCCAGGAATTGGGAAACACTTGGTGGAGACCCTTGC
GACAGCAACGCAACGCCCACTCACGTCCAGAGAGCTGGCCCTTGCCGGAA
TCAGCGCCCCCCGCCCGTGCGATATCGAGGACCTCCTTACGAACATCAAC
AGCTTGACAGCATTCGAGCATTGCTCCTTTTTTTTCACGAGCAAGCGTGC
CAGTGATAATCAGTGAGAATCATAGATCGGTCTATATTGAGTGTTTTTTT
ACCATGTTGGATTGTTTCGTGCTATCCGTGTTTATTGCTCGTCAAATTAA
AAGTCATTGCTCTCTTCTTTGTGTTCCGCGTTTTTCCTCTCTTTCGGTTT
GTGGCACGGTAAATGAGCACATATCACCATCTTGCAGGAAATCGTGTCAT
CGCCAGCGCTCATTTATGTCGTATTTTTTGCGAACATGAAGTTGCTCCTG
GGAACGCGAACTCAAGCCATCGTCAGCGGCGTGTGTGAGGCCGACAGTTG
GCGTGTGTGGGTATCACCGCTCGTTTCTCCAAACACAGCTATTAATAGCT
AATGCTGCTGCCATGAGATATCAACGATGATATGCCAACAAGCGAAAGCA
CAACACGACAGTGATAAAAGTCGGCGGCGTTAGGAAATGTCGTTTGTCAT
CCCTATTTAATAGTTGCACGAAAGGCGGGCGGCCCCCGCGTGATGTCCCC
ACTCCCTTTCAAACAGATATAATCCACTTCTCCACTGAAGGTGGCACCCA
TTTTTTCTTTTGCGAATGTGTATAGGGATGGCGCGGTGTAGCAGTTTTTT
GTTCGTCGAAAACGTCCAGGCATATGCCGGGTCTGCAAAATTATTTTCGG
TGTGTGTGTGTGCGTGCAGTCGCATCTTGGACACTTGAATCTGCGAGTGG
TGGATTTGTTCGCAAGTGAAGACGGAGTCCAATTGGAGTAGTGCATGCTG
CAGCAGTCACATGCAATGAACACGCCGCTTCGACGGCATTCTTTCCAAAC
CCCGAACTTCGTCAAGTGAGGATTCCACCTCTCAAAGTCGCCGCCCGTCT
CACGCTCACACTTATCCGTCCCGCTATTATGTCGGCCAAACTTTGAGCCC
CCCCCCCGCGCCCGCGTCACTGCTTTGGTTTTGTCGCGCTACCCGTCCTG
ACCGTGCGGCCCTCACGACTGTGTAGGCATTGCGGAAGGCACGAAACAGT
CACGAATGTTTCCATGCCACCAACTTTGAGTGCGGCAGAGCCTCGGTGAC
TTGGCCTGCGTCAAAATCTTGCGACGAAGTTGGCGGCGGCCAGGATGCCC
CGGCGGTTTCCGATCCAGGCAGCTGCGGGCTCAGATCGCTGCTGCTAGAA
ACAAACCACGTGCATTCGACTTTGGCGGCGTCTTTGTCCTCTAGCTTCTA
CGACGGGGGACGGAACGAGAGCGAAAGCAACCGCGAGAGAAAGCAGGAGA
GCAAGACGAAGAAGGAGAGGGCGGCGGCTGGGTCGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig58:357030..360417-

>mRNA_P-fluviatile_contig58.12207.1 ID=mRNA_P-fluviatile_contig58.12207.1|Name=mRNA_P-fluviatile_contig58.12207.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=696bp|location=Sequence derived from alignment at P-fluviatile_contig58:357030..360417- (Porterinema fluviatile SAG_2381)
ATGATAGGGTCTGAGGGCACAACTAAGGAGGGAAAGATGATAGGGTCTGA
GGGCACAACTAAGGAGGGAAAGGCATTGCGGAAGGCACGAAACAGTCACG
AATGTTTCCATGCCACCAACTTTGAGTGCGGCAGAGCCTCGGTGACTTGG
CCTGCGTCAAAATCTTGCGACGAAGTTGGCGGCGGCCAGGATGCCCCGGC
GGTTTCCGATCCAGGCAGCTGCGGGCTCAGATCGCTGCTGCTAGAAACAA
ACCACGTGCATTCGACTTTGGCGGCGTCTTTGTCCTCTAGCTTCTACGAC
GGGGGACGGAACGAGAGCGAAAGCAACCGCGAGAGAAAGCAGGAGAGCAA
GACGAAGAAGGAGAGGGCGGCGGCTGGGTCGGCGGCATTGCGGAAGGCAC
GAAACAGTCACGAATGTTTCCATGCCACCAACTTTGAGTGCGGCAGAGCC
TCGGTGACTTGGCCTGCGTCAAAATCTTGCGACGAAGTTGGCGGCGGCCA
GGATGCCCCGGCGGTTTCCGATCCAGGCAGCTGCGGGCTCAGATCGCTGC
TGCTAGAAACAAACCACGTGCATTCGACTTTGGCGGCGTCTTTGTCCTCT
AGCTTCTACGACGGGGGACGGAACGAGAGCGAAAGCAACCGCGAGAGAAA
GCAGGAGAGCAAGACGAAGAAGGAGAGGGCGGCGGCTGGGTCGGCG
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