mRNA_P-fluviatile_contig58.12204.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig58.12204.1
Unique NamemRNA_P-fluviatile_contig58.12204.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig58.12204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig58contigP-fluviatile_contig58:355351..356088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size698
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig58.12204.1prot_P-fluviatile_contig58.12204.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig58 355665..356088 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.2707517-UTR-P-fluviatile_contig58:355350..3556641622816946.2707517-UTR-P-fluviatile_contig58:355350..355664Porterinema fluviatile SAG_2381UTRP-fluviatile_contig58 355351..355664 -
1693570565.5045195-UTR-P-fluviatile_contig58:355350..3556641693570565.5045195-UTR-P-fluviatile_contig58:355350..355664Porterinema fluviatile SAG_2381UTRP-fluviatile_contig58 355351..355664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.2814574-CDS-P-fluviatile_contig58:355664..3556701622816946.2814574-CDS-P-fluviatile_contig58:355664..355670Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 355665..355670 -
1693570567.8596125-CDS-P-fluviatile_contig58:355664..3556701693570567.8596125-CDS-P-fluviatile_contig58:355664..355670Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 355665..355670 -
1622816946.294365-CDS-P-fluviatile_contig58:355710..3560881622816946.294365-CDS-P-fluviatile_contig58:355710..356088Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 355711..356088 -
1693570568.3439424-CDS-P-fluviatile_contig58:355710..3560881693570568.3439424-CDS-P-fluviatile_contig58:355710..356088Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 355711..356088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig58.12204.1

>prot_P-fluviatile_contig58.12204.1 ID=prot_P-fluviatile_contig58.12204.1|Name=mRNA_P-fluviatile_contig58.12204.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=128bp
MPPSPVISGWASDLGTPSPVHKSDARVAAAAAKSAAKSAAKLAAAAAAAV
EAAASSKAFRAGADDDGSESILAATAPALNVARGVGGCCYDSRTASTAEG
EEVEKVDLDADGDSDAESVVWGESDRG*
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mRNA from alignment at P-fluviatile_contig58:355351..356088-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig58.12204.1 ID=mRNA_P-fluviatile_contig58.12204.1|Name=mRNA_P-fluviatile_contig58.12204.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=738bp|location=Sequence derived from alignment at P-fluviatile_contig58:355351..356088- (Porterinema fluviatile SAG_2381)
ATGCCGCCGTCGCCCGTGATCTCGGGGTGGGCCAGTGATCTTGGCACCCC
GTCGCCGGTCCACAAGAGTGATGCTCGCGTAGCTGCCGCAGCGGCAAAGT
CGGCGGCAAAGTCGGCGGCCAAGTTGGCGGCGGCGGCGGCGGCGGCGGTG
GAAGCAGCGGCATCATCTAAAGCCTTTCGAGCCGGCGCCGATGACGACGG
TTCCGAATCGATTTTGGCTGCTACGGCGCCGGCGTTGAACGTGGCGAGGG
GGGTTGGGGGCTGCTGCTATGACTCTCGGACAGCATCCACGGCAGAAGGG
GAGGAGGTCGAGAAGGTAGACCTTGACGCCGACGGCGACTCCGACGCCGA
ATCCGTTGTCTGGGGTGAATCGGATCGGGTAGGGGCGAACCTCGGAAAGC
GACGCGCTAACCTGGGAGGGTTAGCGGCGCTTACTGGGGTTAGGGTGACT
TCGAGATCCGGCAGAAGCAAACACGCCGCGGACGATGACGACGTAGGCTC
CGTTATCGCCGCCAGCGACGGCGTCACAGGCCCGGGTTGGCGGTTGCCTA
CGGGGGCTGCTGGCCACGCGCCAGGGATAGACCACCCCGACTCGCGGAGA
TCCCGGTCCGGATCGATCCACACGGGTGATCTGATCGACGAGGCGGGCCC
CTCCGCGGCAGCCCTCGCCCACGAGAAACAGGAGCTGCTCTTCAGCGTCT
TCGGGCCGCAAGCGGCGGCCGTGGTGTCAGCCGGGAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig58:355351..356088-

>mRNA_P-fluviatile_contig58.12204.1 ID=mRNA_P-fluviatile_contig58.12204.1|Name=mRNA_P-fluviatile_contig58.12204.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=768bp|location=Sequence derived from alignment at P-fluviatile_contig58:355351..356088- (Porterinema fluviatile SAG_2381)
ATGCCGCCGTCGCCCGTGATCTCGGGGTGGGCCAGTGATCTTGGCACCCC
GTCGCCGGTCCACAAGAGTGATGCTCGCGTAGCTGCCGCAGCGGCAAAGT
CGGCGGCAAAGTCGGCGGCCAAGTTGGCGGCGGCGGCGGCGGCGGCGGTG
GAAGCAGCGGCATCATCTAAAGCCTTTCGAGCCGGCGCCGATGACGACGG
TTCCGAATCGATTTTGGCTGCTACGGCGCCGGCGTTGAACGTGGCGAGGG
GGGTTGGGGGCTGCTGCTATGACTCTCGGACAGCATCCACGGCAGAAGGG
GAGGAGGTCGAGAAGGTAGACCTTGACGCCGACGGCGACTCCGACGCCGA
ATCCGTTGTCTGGGGTGAATCGGATCGGATGCCGCCGTCGCCCGTGATCT
CGGGGTGGGCCAGTGATCTTGGCACCCCGTCGCCGGTCCACAAGAGTGAT
GCTCGCGTAGCTGCCGCAGCGGCAAAGTCGGCGGCAAAGTCGGCGGCCAA
GTTGGCGGCGGCGGCGGCGGCGGCGGTGGAAGCAGCGGCATCATCTAAAG
CCTTTCGAGCCGGCGCCGATGACGACGGTTCCGAATCGATTTTGGCTGCT
ACGGCGCCGGCGTTGAACGTGGCGAGGGGGGTTGGGGGCTGCTGCTATGA
CTCTCGGACAGCATCCACGGCAGAAGGGGAGGAGGTCGAGAAGGTAGACC
TTGACGCCGACGGCGACTCCGACGCCGAATCCGTTGTCTGGGGTGAATCG
GATCGGGGTTAGGGTTAG
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