mRNA_P-fluviatile_contig56.12018.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig56.12018.1
Unique NamemRNA_P-fluviatile_contig56.12018.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig56.12018.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 8.450e-12
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 2 
Query:   62 QPVIDVMVLYTEKAMSKLNSGDK--RSNSQMETDIATAYQGANTALADSAIGFTVRIVHMQE 241
            + VIDV+VLYTEKAM + +SGD   RS +QME+DIATAYQGAN AL+ S + F+VRIVHM++
Sbjct:  216 ETVIDVLVLYTEKAMLESDSGDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQ 277
[Close]
BLAST of mRNA_P-fluviatile_contig56.12018.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.140e-11
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 2 
Query:   62 QPVIDVMVLYTEKAMSKLNS--GDKRSNSQMETDIATAYQGANTALADSAIGFTVRIVHMQE 241
            + VIDV+VLYTEKAM + NS  G  RS +QME+DIATAYQGAN AL+ S + F+VRIVHM++
Sbjct:  192 ETVIDVLVLYTEKAMLESNSVDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQ 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig56.12018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC56_ECTSI8.450e-1264.52Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A6H5JDN0_9PHAE2.140e-1164.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig56contigP-fluviatile_contig56:603147..604105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue6.7e-10
Seed eggNOG ortholog2880.D8LC56
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size959
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig56.12018.1prot_P-fluviatile_contig56.12018.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig56 603226..603456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.388017-UTR-P-fluviatile_contig56:603146..6032251622816927.388017-UTR-P-fluviatile_contig56:603146..603225Porterinema fluviatile SAG_2381UTRP-fluviatile_contig56 603147..603225 +
1693570502.7874804-UTR-P-fluviatile_contig56:603146..6032251693570502.7874804-UTR-P-fluviatile_contig56:603146..603225Porterinema fluviatile SAG_2381UTRP-fluviatile_contig56 603147..603225 +
1622816927.409412-UTR-P-fluviatile_contig56:603456..6041051622816927.409412-UTR-P-fluviatile_contig56:603456..604105Porterinema fluviatile SAG_2381UTRP-fluviatile_contig56 603457..604105 +
1693570502.8106034-UTR-P-fluviatile_contig56:603456..6041051693570502.8106034-UTR-P-fluviatile_contig56:603456..604105Porterinema fluviatile SAG_2381UTRP-fluviatile_contig56 603457..604105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.3979888-CDS-P-fluviatile_contig56:603225..6034561622816927.3979888-CDS-P-fluviatile_contig56:603225..603456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig56 603226..603456 +
1693570502.799972-CDS-P-fluviatile_contig56:603225..6034561693570502.799972-CDS-P-fluviatile_contig56:603225..603456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig56 603226..603456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig56.12018.1

>prot_P-fluviatile_contig56.12018.1 ID=prot_P-fluviatile_contig56.12018.1|Name=mRNA_P-fluviatile_contig56.12018.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=77bp
MVLYTEKAMSKLNSGDKRSNSQMETDIATAYQGANTALADSAIGFTVRIV
HMQEVLRCDRKSAVLANSPGEQNPTR*
back to top

mRNA from alignment at P-fluviatile_contig56:603147..604105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig56.12018.1 ID=mRNA_P-fluviatile_contig56.12018.1|Name=mRNA_P-fluviatile_contig56.12018.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=959bp|location=Sequence derived from alignment at P-fluviatile_contig56:603147..604105+ (Porterinema fluviatile SAG_2381)
CCTGACGATACTTGCGCTATGTTCGGCATTTCGACGCGACGTTACCCCAT
GAATCGACATTCAGCCCGTGATCGACGTCATGGTCCTCTACACCGAAAAA
GCCATGTCCAAGCTGAACTCCGGAGACAAACGGAGCAACTCCCAGATGGA
AACCGACATCGCCACGGCGTACCAAGGCGCCAACACCGCCCTGGCTGATT
CAGCGATTGGCTTTACCGTCAGAATCGTGCATATGCAAGAGGTACTGCGG
TGTGACCGCAAGTCTGCCGTGTTGGCGAACTCTCCCGGTGAACAAAATCC
GACGCGATAGGACACTCCGCCATTCAAAATCGGAACAGCGTCCTCACTTC
GACGTCGGACGTCTGACCAATGCTTGAAACGTCACAACGAGTAAAAACGA
ACTGTGATAGGTGTACAAAGCAATACATGAAGCTGGGAAGGTCGCTGCTT
TAACCCTAAGCGCAGTTTCAGCGACACGCAGTGTCAATTCACGCACGCTT
TGTGAGGACAGCCAGATTCAATTTTGTGCTGGCGACTGACGAAAGGTTTT
GCCACCACTCTACACTCTACGGCGTGCATCGAAGAAGCGGCCGAGCCACC
AACCTCTTGCCACTAGATTCGTAGCCTGACCTTACCGTTACCCTCGCCGT
GCTCTCAACGCGAACAATAGGTATCTTACCAGGAAAACAGCAGCATCACG
GACGCGGTCAAAGATTGCCAGGCGAACGCCAAAGAAAAGTTCGGCAATGT
GGACATCCACGCCTTGCGTGACCAATACGGCGCCGATCTCGTGCAGCTGA
TCGGTTTCTACGAAACCACTTGCGGCATCGGGTGCGTAGCGCGGCTTCAC
AACCCCTTCAGGCATAAACGGCGTGTGCAAACCCTTAGCCTACCACTGGA
GCCCCCCGTTCACGATGCATGCTTCGCAGTTTCCATCTTTGTTTTTCTAT
TACCACGGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig56:603147..604105+

>mRNA_P-fluviatile_contig56.12018.1 ID=mRNA_P-fluviatile_contig56.12018.1|Name=mRNA_P-fluviatile_contig56.12018.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=462bp|location=Sequence derived from alignment at P-fluviatile_contig56:603147..604105+ (Porterinema fluviatile SAG_2381)
ATGGTCCTCTACACCGAAAAAGCCATGTCCAAGCTGAACTCCGGAGACAA
ACGGAGCAACTCCCAGATGGAAACCGACATCGCCACGGCGTACCAAGGCG
CCAACACCGCCCTGGCTGATTCAGCGATTGGCTTTACCGTCAGAATCGTG
CATATGCAAGAGGTACTGCGGTGTGACCGCAAGTCTGCCGTGTTGGCGAA
CTCTCCCGGTGAACAAAATCCGACGCGATAGATGGTCCTCTACACCGAAA
AAGCCATGTCCAAGCTGAACTCCGGAGACAAACGGAGCAACTCCCAGATG
GAAACCGACATCGCCACGGCGTACCAAGGCGCCAACACCGCCCTGGCTGA
TTCAGCGATTGGCTTTACCGTCAGAATCGTGCATATGCAAGAGGTACTGC
GGTGTGACCGCAAGTCTGCCGTGTTGGCGAACTCTCCCGGTGAACAAAAT
CCGACGCGATAG
back to top