mRNA_P-fluviatile_contig55.11949.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig55.11949.1
Unique NamemRNA_P-fluviatile_contig55.11949.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5L5I8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.610e-11
Identity = 53/115 (46.09%), Postives = 61/115 (53.04%), Query Frame = 3 
Query:  201 THDDNVPSAGGASVVPSSDGFPTTADFGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            ++   VP AG   VVP              LSASGF CV TF GMDL DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  486 SYPSGVPPAGSTDVVP--------------LSASGFECVGTFPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGST 586
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BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5KPB2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.250e-9
Identity = 54/118 (45.76%), Postives = 64/118 (54.24%), Query Frame = 3 
Query:  192 VVPTHDDNVPSAGGASVVPSSDGFPTTADFGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            VVP   ++VP AG A VVPSS              AS F CV TF G++L DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  381 VVPA-SESVPPAGSADVVPSS--------------ASEFVCVGTFPGIELGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGST 483
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BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5L7B6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B6_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.030e-9
Identity = 50/110 (45.45%), Postives = 61/110 (55.45%), Query Frame = 3 
Query:  219 PSAGGASVVPSSDGFPTTADFGAAL-SASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            P AG ASV+PSS+             SAS F CV+TF GMDL DTSVLT+  LMDG + TP QDF   F+ E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  411 PPAGDASVIPSSESVXXXXXXXXXXPSASEFVCVDTFPGMDLGDTSVLTNEQLMDGYDDTPYQDFSPVFVPESDAANVAGVLDSIDEGADFDLGAAALGPGASPFALGST 520
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BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5KFA0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.410e-9
Identity = 53/122 (43.44%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  228 GGASVVPSSDGFPTTAD----------------FGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            G A+VVPSS+  P T                        ASGF CV TF GMDL DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  204 GSATVVPSSESVPPTGPTXXXXXXXXXXXXXXXXXXXXXASGFECVGTFPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGST 325
[Close]
BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.560e-9
Identity = 53/122 (43.44%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  228 GGASVVPSSDGFPTTAD----------------FGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            G A+VVPSS+  P T                        ASGF CV TF GMDL DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  517 GSATVVPSSESVPPTGPTXXXXXXXXXXXXXXXXXXXXXASGFECVGTFPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGST 638
[Close]
BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.760e-9
Identity = 53/122 (43.44%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  228 GGASVVPSSDGFPTTAD----------------FGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            G A+VVPSS+  P T                        ASGF CV TF GMDL DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  663 GSATVVPSSESVPPTGPTXXXXXXXXXXXXXXXXXXXXXASGFECVGTFPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGST 784
[Close]
BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.760e-9
Identity = 53/122 (43.44%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  228 GGASVVPSSDGFPTTAD----------------FGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            G A+VVPSS+  P T                        ASGF CV TF GMDL DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  517 GSATVVPSSESVPPTGPTXXXXXXXXXXXXXXXXXXXXXASGFECVGTFPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGST 638
[Close]
BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.900e-9
Identity = 53/122 (43.44%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  228 GGASVVPSSDGFPTTAD----------------FGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            G A+VVPSS+  P T                        ASGF CV TF GMDL DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  517 GSATVVPSSESVPPTGPTXXXXXXXXXXXXXXXXXXXXXASGFECVGTFPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGST 638
[Close]
BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5JWY1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.550e-9
Identity = 64/193 (33.16%), Postives = 84/193 (43.52%), Query Frame = 3 
Query:  216 VPSAGGASVVPSSDGFPTTADFGAALS----------------ASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDARGVGV--GVATASLGPGERWKRLMSTCDPVEPIEKGVFPGPSAEKVTTNRVLR--VGVC*SPRELTAERKWQVA*TRM*SPSRLLVTSGKRGT 734
            +P AG ASVVPS+D                             AS F CV TF G+DL DTSVLTD  L DG + TP +DFFT F  E+ A  +A   D+ G G   G+  A+LGPG     L ST                 + V  NR  R     C  P   TA+++  V   ++   +  +   G+RG+
Sbjct:    4 IPPAGSASVVPSADSVXXXXXXXXXXXXXXXXXXXXXXXXXXXASEFVCVGTFPGLDLGDTSVLTDEQLTDGYDDTPYEDFFTVFFPESDAANVAGVLDSIGGGADFGLGAAALGPGASPFALGST----------------EKSVDINRFHRSLAPACEPPLRETAQQRGIVVTGKLEPCTDCMKAKGRRGS 180
[Close]
BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Match: A0A6H5JSL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.090e-8
Identity = 53/126 (42.06%), Postives = 61/126 (48.41%), Query Frame = 3 
Query:  216 VPSAGGASVVPSSDGFPTTADFGAALS----------------ASGFGCVETFQGMDLEDTSVLTDVDLMDGRNTTPIQDFFTAFISEAGAERLAAGFDA--RGVGVGVATASLGPGERWKRLMST 539
            +P AG ASVVPS+D                             AS F CV TF GMDL DTSVLTD  LMDG + TP QDFF  FI E+ A  +A   D+   G    +  A+LGPG     L ST
Sbjct:  153 IPPAGSASVVPSADSXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGST 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig55.11949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L5I8_9PHAE7.610e-1146.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPB2_9PHAE1.250e-945.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7B6_9PHAE2.030e-945.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFA0_9PHAE3.410e-943.44Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JL48_9PHAE3.560e-943.44Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5J4N2_9PHAE3.760e-943.44Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE3.760e-943.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE3.900e-943.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWY1_9PHAE5.550e-933.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL0_9PHAE1.090e-842.06Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig55contigP-fluviatile_contig55:825960..826796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size837
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig55.11949.1prot_P-fluviatile_contig55.11949.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig55 826049..826594 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.7491627-UTR-P-fluviatile_contig55:825959..8260481622816908.7491627-UTR-P-fluviatile_contig55:825959..826048Porterinema fluviatile SAG_2381UTRP-fluviatile_contig55 825960..826048 +
1693570453.5674357-UTR-P-fluviatile_contig55:825959..8260481693570453.5674357-UTR-P-fluviatile_contig55:825959..826048Porterinema fluviatile SAG_2381UTRP-fluviatile_contig55 825960..826048 +
1622816908.7714863-UTR-P-fluviatile_contig55:826594..8267961622816908.7714863-UTR-P-fluviatile_contig55:826594..826796Porterinema fluviatile SAG_2381UTRP-fluviatile_contig55 826595..826796 +
1693570453.5839217-UTR-P-fluviatile_contig55:826594..8267961693570453.5839217-UTR-P-fluviatile_contig55:826594..826796Porterinema fluviatile SAG_2381UTRP-fluviatile_contig55 826595..826796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.759215-CDS-P-fluviatile_contig55:826048..8265941622816908.759215-CDS-P-fluviatile_contig55:826048..826594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig55 826049..826594 +
1693570453.5757365-CDS-P-fluviatile_contig55:826048..8265941693570453.5757365-CDS-P-fluviatile_contig55:826048..826594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig55 826049..826594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig55.11949.1

>prot_P-fluviatile_contig55.11949.1 ID=prot_P-fluviatile_contig55.11949.1|Name=mRNA_P-fluviatile_contig55.11949.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=182bp
MPPAPSLVVSSAEGGTTGAMPSVSHLLPASSTGVVVPTHDDNVPSAGGAS
VVPSSDGFPTTADFGAALSASGFGCVETFQGMDLEDTSVLTDVDLMDGRN
TTPIQDFFTAFISEAGAERLAAGFDARGVGVGVATASLGPGERWKRLMST
CDPVEPIEKGVFPGPSAEKVTTNRVLRVGVC*
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mRNA from alignment at P-fluviatile_contig55:825960..826796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig55.11949.1 ID=mRNA_P-fluviatile_contig55.11949.1|Name=mRNA_P-fluviatile_contig55.11949.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=837bp|location=Sequence derived from alignment at P-fluviatile_contig55:825960..826796+ (Porterinema fluviatile SAG_2381)
AGCGAGGCAATGCGGTAGTTCGGGGGGCTGGTGCGGAGGCCGTTGGTGTT
TCTCCCGGTTTTTCCCCCACCGGTTTTTCCTCCACCGGTATGCCCCCCGC
CCCCAGTCTCGTGGTGTCATCTGCCGAAGGCGGCACCACGGGAGCGATGC
CGTCTGTTTCCCACCTGCTCCCTGCCAGTAGCACAGGAGTAGTAGTCCCT
ACCCATGACGACAACGTGCCCTCCGCCGGCGGTGCCAGTGTCGTACCTTC
GAGTGATGGCTTTCCCACCACCGCGGATTTCGGCGCAGCTCTTTCGGCTT
CGGGTTTTGGGTGTGTGGAAACTTTCCAGGGGATGGACTTGGAGGACACG
AGCGTTCTCACGGATGTGGATTTGATGGACGGACGTAACACGACGCCGAT
TCAGGATTTTTTTACTGCTTTCATTTCGGAAGCGGGAGCAGAGCGTCTGG
CAGCAGGATTTGATGCACGTGGTGTTGGGGTTGGGGTTGCGACAGCTTCA
CTCGGCCCGGGGGAAAGATGGAAGCGGTTAATGTCGACGTGTGATCCAGT
GGAACCGATCGAAAAGGGAGTCTTCCCCGGGCCGAGTGCAGAGAAAGTAA
CCACGAATCGTGTGCTTCGTGTCGGAGTTTGTTGAAGCCCACGTGAGCTC
ACGGCTGAGCGGAAGTGGCAAGTAGCCTAGACGAGAATGTGATCACCATC
GCGGCTTCTCGTCACTTCCGGAAAGAGAGGCACTGCCTACGTACGCGTAC
CTATCTCCGCCTGATGCATCCATGGACTGTAGTAGCTGGCGCGGCGTGCA
CCGCCGGTTCATAGTTCGGCCTGACCTGGTCTTGTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig55:825960..826796+

>mRNA_P-fluviatile_contig55.11949.1 ID=mRNA_P-fluviatile_contig55.11949.1|Name=mRNA_P-fluviatile_contig55.11949.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1092bp|location=Sequence derived from alignment at P-fluviatile_contig55:825960..826796+ (Porterinema fluviatile SAG_2381)
ATGCCCCCCGCCCCCAGTCTCGTGGTGTCATCTGCCGAAGGCGGCACCAC
GGGAGCGATGCCGTCTGTTTCCCACCTGCTCCCTGCCAGTAGCACAGGAG
TAGTAGTCCCTACCCATGACGACAACGTGCCCTCCGCCGGCGGTGCCAGT
GTCGTACCTTCGAGTGATGGCTTTCCCACCACCGCGGATTTCGGCGCAGC
TCTTTCGGCTTCGGGTTTTGGGTGTGTGGAAACTTTCCAGGGGATGGACT
TGGAGGACACGAGCGTTCTCACGGATGTGGATTTGATGGACGGACGTAAC
ACGACGCCGATTCAGGATTTTTTTACTGCTTTCATTTCGGAAGCGGGAGC
AGAGCGTCTGGCAGCAGGATTTGATGCACGTGGTGTTGGGGTTGGGGTTG
CGACAGCTTCACTCGGCCCGGGGGAAAGATGGAAGCGGTTAATGTCGACG
TGTGATCCAGTGGAACCGATCGAAAAGGGAGTCTTCCCCGGGCCGAGTGC
AGAGAAAGTAACCACGAATCGTGTGCTTCGTGTCGGAGTTTGTTGAATGC
CCCCCGCCCCCAGTCTCGTGGTGTCATCTGCCGAAGGCGGCACCACGGGA
GCGATGCCGTCTGTTTCCCACCTGCTCCCTGCCAGTAGCACAGGAGTAGT
AGTCCCTACCCATGACGACAACGTGCCCTCCGCCGGCGGTGCCAGTGTCG
TACCTTCGAGTGATGGCTTTCCCACCACCGCGGATTTCGGCGCAGCTCTT
TCGGCTTCGGGTTTTGGGTGTGTGGAAACTTTCCAGGGGATGGACTTGGA
GGACACGAGCGTTCTCACGGATGTGGATTTGATGGACGGACGTAACACGA
CGCCGATTCAGGATTTTTTTACTGCTTTCATTTCGGAAGCGGGAGCAGAG
CGTCTGGCAGCAGGATTTGATGCACGTGGTGTTGGGGTTGGGGTTGCGAC
AGCTTCACTCGGCCCGGGGGAAAGATGGAAGCGGTTAATGTCGACGTGTG
ATCCAGTGGAACCGATCGAAAAGGGAGTCTTCCCCGGGCCGAGTGCAGAG
AAAGTAACCACGAATCGTGTGCTTCGTGTCGGAGTTTGTTGA
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