mRNA_P-fluviatile_contig5.11329.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig5.11329.1
Unique NamemRNA_P-fluviatile_contig5.11329.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig5.11329.1 vs. uniprot
Match: A0A6H5KG76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG76_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.220e-13
Identity = 51/109 (46.79%), Postives = 59/109 (54.13%), Query Frame = 2 
Query:    8 NTCADLADAQGKAQEQLRRRQAAYRWITGTYFTPLASAAAVTT*RRSAST-----------------------SGRTKRGGSLRVKRLRLLTRAPQDGEKPGRGCKDRG 265
            +TC +LADAQGKAQEQLRRRQAAYR ITGTYF PLASAA VT   +                           + R K GGS  VKRL+LL R+     K   G + +G
Sbjct:  171 HTCTELADAQGKAQEQLRRRQAAYRCITGTYFIPLASAAEVTALEKECFNKRQVGLWGSGVEEVSKQEVALRPAARMKSGGSRSVKRLQLLKRSAAGWGKAKTGVEGQG 279
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BLAST of mRNA_P-fluviatile_contig5.11329.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.940e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 2 
Query:    2 AQNTCADLADAQGKAQEQLRRRQAAYRWITGTYFTPLASAAAVT 133
            A +TC +LADAQGKAQEQLRRRQAAYR ITGTYFTPLASAA VT
Sbjct:  356 APHTCTELADAQGKAQEQLRRRQAAYRCITGTYFTPLASAAEVT 399
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BLAST of mRNA_P-fluviatile_contig5.11329.1 vs. uniprot
Match: A0A6H5KD31_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD31_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.110e-12
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 2 
Query:    2 AQNTCADLADAQGKAQEQLRRRQAAYRWITGTYFTPLASAAAVT 133
            A +TC +LADAQGKAQEQLRRR AAYR ITGTYFTPLASAA VT
Sbjct:   32 APHTCTELADAQGKAQEQLRRRWAAYRCITGTYFTPLASAAEVT 75
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BLAST of mRNA_P-fluviatile_contig5.11329.1 vs. uniprot
Match: A0A6H5KEY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.890e-10
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 2 
Query:    2 AQNTCADLADAQGKAQEQLRRRQAAYRWITGTYF--TPLASAAAVT 133
            A +TC +LADAQGKAQEQLRRRQAAY  ITGTYF  TPLASAA VT
Sbjct:  287 APHTCTELADAQGKAQEQLRRRQAAYSCITGTYFASTPLASAAEVT 332
[Close]
BLAST of mRNA_P-fluviatile_contig5.11329.1 vs. uniprot
Match: A0A6H5JQL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.190e-8
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 2 
Query:    2 AQNTCADLADAQGKAQEQLRRRQAAYRWITGTYF 103
            A +TC +LADAQGKAQEQLRRRQAAYR ITGTYF
Sbjct:  237 APHTCTELADAQGKAQEQLRRRQAAYRCITGTYF 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig5.11329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KG76_9PHAE1.220e-1346.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGK0_9PHAE5.940e-1386.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD31_9PHAE5.110e-1284.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KEY1_9PHAE1.890e-1080.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQL8_9PHAE2.190e-885.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig5contigP-fluviatile_contig5:4413852..4414980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size307
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig5.11329.1prot_P-fluviatile_contig5.11329.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig5 4413852..4414979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.1408675-CDS-P-fluviatile_contig5:4413851..44138941622816773.1408675-CDS-P-fluviatile_contig5:4413851..4413894Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4413852..4413894 +
1693569713.7273185-CDS-P-fluviatile_contig5:4413851..44138941693569713.7273185-CDS-P-fluviatile_contig5:4413851..4413894Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4413852..4413894 +
1622816773.1556082-CDS-P-fluviatile_contig5:4414099..44141591622816773.1556082-CDS-P-fluviatile_contig5:4414099..4414159Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4414100..4414159 +
1693569713.7365475-CDS-P-fluviatile_contig5:4414099..44141591693569713.7365475-CDS-P-fluviatile_contig5:4414099..4414159Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4414100..4414159 +
1622816773.1677094-CDS-P-fluviatile_contig5:4414479..44145411622816773.1677094-CDS-P-fluviatile_contig5:4414479..4414541Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4414480..4414541 +
1693569713.7471976-CDS-P-fluviatile_contig5:4414479..44145411693569713.7471976-CDS-P-fluviatile_contig5:4414479..4414541Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4414480..4414541 +
1622816773.1801677-CDS-P-fluviatile_contig5:4414838..44149791622816773.1801677-CDS-P-fluviatile_contig5:4414838..4414979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4414839..4414979 +
1693569713.758621-CDS-P-fluviatile_contig5:4414838..44149791693569713.758621-CDS-P-fluviatile_contig5:4414838..4414979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4414839..4414979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig5.11329.1

>prot_P-fluviatile_contig5.11329.1 ID=prot_P-fluviatile_contig5.11329.1|Name=mRNA_P-fluviatile_contig5.11329.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
GSEHLRGSGGRAGQGARAAQAEAGRLQMDNGHVLHPAGFRGGGNHLEKEC
FNKRQDEARRLAARKAIAAADESATGWGKARTGVQRQRVRRRTMEGRAAR
GT
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mRNA from alignment at P-fluviatile_contig5:4413852..4414980+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig5.11329.1 ID=mRNA_P-fluviatile_contig5.11329.1|Name=mRNA_P-fluviatile_contig5.11329.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-fluviatile_contig5:4413852..4414980+ (Porterinema fluviatile SAG_2381)
GGCTCAGAACACCTGCGCGGATCTGGCGGACGCGCAGGGCAAGGTGACAT
CGCGTACAAGTACACGTTGTTCATTTCCCGCGTTGCGAATGGAACGTGGC
GTTCAAGTACAGGTGTTTCATTGTGTTGCCTGACCGCTTCCCGGTCTACC
CGTGCCGAGGTTGTTCTCCCCGTCACCGCGTCCCGATTCTCCCCGTTGCG
TGCATCGTTGCCACGGCGTTGAAAAATATGCCAACGTCCGAACTCCAGGC
GCAAGAGCAGCTCAGGCGGAGGCAGGCCGCCTACAGATGGATAACGGGCA
CGTACTTCGTGAGTGTCGACGTTCATTCGTAGGTAGCGGTGTGGCACAGA
GGTGTACAAGTACGCGGGTGCGGGTATTCCAGACGGACGCTCCATCCGTT
CTTTGCCCCATTTTGGGATGGCCCTTGGAATTCGAGGCGTTGTTGGGATG
TGCTACGGTAGCCGACAGGGAGCTAGAGGCCGATTGCAATAAGGCAGACC
GACCGAACGAGAACTGGACGGCGTAGGGACCTTGTGACAGTTTAGGAAAC
GAAATCCTGAGTAAAATGTTTCTTCCTACCGTATGACGTTGACGTATACC
CGATGCGATGTTTCTACGGCGTTGGCAGACCCCGCTGGCTTCCGCGGCGG
CGGTAACCACTTAGAGAAGGAGTGCTTCAACAAGCGGCAGGTGGGTCCTT
GGGGCTCGGGTGTCGAAGAAGTGGACAAACAGGACGGTGATCGCATTCCT
GTGTAATTAGCGGCGATTCATGACTGTTGCCTTGTCATTGATCCCGTTCG
CCCCCCGTTTTGCCTTTTATTCCGTTTTTTTTCCGTGTTTCTTCGTTGTT
TATTTTGACGCATCCGTCATCGTACTCATATCAAAATCATTCCGTGAGCA
GTGGACGTTTGTGGTTGCGTTTCATGATGTTTCCTGTTGTTTTTTAAGTT
GTTGATTATGTTCCGTTGCTCTCCGACTTGCCGCCAGGACGAAGCGCGGA
GGCTCGCTGCGCGTAAAGCGATTGCGGCTGCTGACGAGAGCGCCACAGGA
TGGGGAAAAGCCAGGACGGGGGTGCAAAGACAGAGGGTGAGGAGAAGGAC
TATGGAGGGTCGAGCCGCAAGGGGGACGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig5:4413852..4414980+

>mRNA_P-fluviatile_contig5.11329.1 ID=mRNA_P-fluviatile_contig5.11329.1|Name=mRNA_P-fluviatile_contig5.11329.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig5:4413852..4414980+ (Porterinema fluviatile SAG_2381)
GGCTCAGAACACCTGCGCGGATCTGGCGGACGCGCAGGGCAAGGGCTCAG
AACACCTGCGCGGATCTGGCGGACGCGCAGGGCAAGGCGCAAGAGCAGCT
CAGGCGGAGGCAGGCCGCCTACAGATGGATAACGGGCACGTACTTCGCGC
AAGAGCAGCTCAGGCGGAGGCAGGCCGCCTACAGATGGATAACGGGCACG
TACTTCACCCCGCTGGCTTCCGCGGCGGCGGTAACCACTTAGAGAAGGAG
TGCTTCAACAAGCGGCAGACCCCGCTGGCTTCCGCGGCGGCGGTAACCAC
TTAGAGAAGGAGTGCTTCAACAAGCGGCAGGACGAAGCGCGGAGGCTCGC
TGCGCGTAAAGCGATTGCGGCTGCTGACGAGAGCGCCACAGGATGGGGAA
AAGCCAGGACGGGGGTGCAAAGACAGAGGGTGAGGAGAAGGACTATGGAG
GGTCGAGCCGCAAGGGGGACGGACGAAGCGCGGAGGCTCGCTGCGCGTAA
AGCGATTGCGGCTGCTGACGAGAGCGCCACAGGATGGGGAAAAGCCAGGA
CGGGGGTGCAAAGACAGAGGGTGAGGAGAAGGACTATGGAGGGTCGAGCC
GCAAGGGGGACG
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