mRNA_P-fluviatile_contig5.11324.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig5.11324.1
Unique NamemRNA_P-fluviatile_contig5.11324.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig5.11324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig5contigP-fluviatile_contig5:4384285..4389777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size575
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig5.11324.1prot_P-fluviatile_contig5.11324.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig5 4384333..4389640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.074555-UTR-P-fluviatile_contig5:4384284..43843321622816773.074555-UTR-P-fluviatile_contig5:4384284..4384332Porterinema fluviatile SAG_2381UTRP-fluviatile_contig5 4384285..4384332 +
1693569713.5263343-UTR-P-fluviatile_contig5:4384284..43843321693569713.5263343-UTR-P-fluviatile_contig5:4384284..4384332Porterinema fluviatile SAG_2381UTRP-fluviatile_contig5 4384285..4384332 +
1622816773.1112773-UTR-P-fluviatile_contig5:4389640..43897771622816773.1112773-UTR-P-fluviatile_contig5:4389640..4389777Porterinema fluviatile SAG_2381UTRP-fluviatile_contig5 4389641..4389777 +
1693569713.7150943-UTR-P-fluviatile_contig5:4389640..43897771693569713.7150943-UTR-P-fluviatile_contig5:4389640..4389777Porterinema fluviatile SAG_2381UTRP-fluviatile_contig5 4389641..4389777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.0877824-CDS-P-fluviatile_contig5:4384332..43843681622816773.0877824-CDS-P-fluviatile_contig5:4384332..4384368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4384333..4384368 +
1693569713.5383599-CDS-P-fluviatile_contig5:4384332..43843681693569713.5383599-CDS-P-fluviatile_contig5:4384332..4384368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4384333..4384368 +
1622816773.0988567-CDS-P-fluviatile_contig5:4389286..43896401622816773.0988567-CDS-P-fluviatile_contig5:4389286..4389640Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4389287..4389640 +
1693569713.5489814-CDS-P-fluviatile_contig5:4389286..43896401693569713.5489814-CDS-P-fluviatile_contig5:4389286..4389640Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 4389287..4389640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig5.11324.1

>prot_P-fluviatile_contig5.11324.1 ID=prot_P-fluviatile_contig5.11324.1|Name=mRNA_P-fluviatile_contig5.11324.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
MNFQSWTALLAQFSRTKRARRHAQRPSRSLVHAQERAWHPWTRLRPFVMM
VPAQWYSFCLLSVPSLSEIMVRLPGRKAHAGKKASFRCSSSGHGVAERVP
DRQQSGRQGRIARRNCRGVARRQRRRHWL*
back to top

mRNA from alignment at P-fluviatile_contig5:4384285..4389777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig5.11324.1 ID=mRNA_P-fluviatile_contig5.11324.1|Name=mRNA_P-fluviatile_contig5.11324.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5493bp|location=Sequence derived from alignment at P-fluviatile_contig5:4384285..4389777+ (Porterinema fluviatile SAG_2381)
CAAGAACCTTCCTTTCAGGTGCTGTGGCGAGCAGTGACGTCTGATCCAAT
GAACTTCCAGTCTTGGACAGCTCTTCTCGCTCAGGTATGTGCAACACAGC
CACAGCAGAGCCGGGGCGTTGTAGCGAGTGCTGCACCAGGATCTCGCGAC
TTGCAAAGCCCCGTCGCTCACCATGGCTATTCGAGGTTACAGTGAACGAG
TTACTGCCTAAGTGCGAAAGACATGTAATTTGTATTCATGTTCGCCGTTG
TGTTCCAACCGTGAAGACAGACGGGTGAGAGAGAGCCAGCACATTCCGTC
GAAGGATTTTCTTTGCTAGTAAAAGGACGTACACGGAATGTTGAGACGTG
GACCCTCGCATGCGTTTCAGAGGAAAGAATGAGATATCACAGGAGGACAG
GATGGCGGAAGTTGGCGCCAATTCCATCATTGTGCAGGTAGGTTGTGAGT
ATGTGCGTAGGTTGCAGGCCGGGCAGTACGGCACAACATCACCACGATGG
CGACGGGGCACATCTCGATCGGTGTTGCGCGATCAGAGCTGGAAGCAACT
CGCCAGGGTGGGTGAGCCCCATGTGTGAAAACGCCTCGGGAAAGTGCGCC
CGCCTGGGAGGAAGACGAGGACCACAAACAACAACACGCGTCCGCGCTCA
GATTTGGCATCCCTATCCGGAGAGAAAATAAAAACTCTGGCTGTCTGCCT
ACGATGACAATTTTCAGCGTCGTACCGTCGGCCGCGCTTAGAAAATCGTG
ATCCGGATCTCTTCCACTACCCGAGTCGGAACTGCGATAAATGGCCTGCC
CCGTGTGGTTTTGGTCGCGGACTGTCGCCTTCGCCAACTTGAGTTGCTGT
TGTTGTTGGTGTTGTTGATGTCATCACATGAAAAAGCCTCCCGATCACTT
CTCAGTACCAGATGTCCGTGCTGATCTACTCTGTCGAGTCGACTTCCGTG
GCACGTAGTGGGGTTGGAAACGGGAAAATGTATTATCTTCTTTAGGCGAA
ATGACAAAAAGGGGCATGCCACCTGCTGTTGTGAACAAAAAGGGGTACCC
TATTTTTCGCTCCGGGGCGCGCCACCGATTACTCCGCCAGATGACCTCCA
AATCACGTTCTGACGTCTTCAACATGGACCCATGGTGTCTGGCCAGCACG
CAACTAGGTTTTATTTATTTGTTGCCTCGGGTTACAGGGTGAAAACAGGC
CCACAACAAAGTGACCTACCTCTGCCGACTACCCCTTTTTGCTCACAAGT
ACAGGGGGTATACCCCCCTTTCATCTAAAAGTTCAAATCCTTCCCATTTT
TATTCACAGTATACCCCTTTTTGCAGAACTGACCACCCCTTTTTGTACGA
GAGGGCAGTAGGTACGGAGAGGTCCAAATACGCGCGCGACAACAAAGTCG
ACTTCTCCCCGCCACTCCCATACACAAGATTCAACGCCCGGAGTATTTTG
CGCGCAAGCCAAGCTGCCGACCTTCCGCAAGGAGGCGCGCAAGCCAAGCT
GCAGACCCTCCGGAAAGATACGGATTCGCCGTCATGGGGGTGCAGCGCGT
TTCCTACCAAAGGGACGACAAAGATGTCCGACGCTTTCTAAACCATCACG
GCTGTGCATCCACATGTATGCGCACATTGAAAAGATGGATTGCCATCGGA
GACTAACAAAAGCATAATATCATGACCGAATCACTGACACGCGCGGCTCT
TGGTGAGCTGACGACTCCATGGGATGGAGGAATCAGCGGAAACATCCGAA
CAATGCCACGATTTATGGCGTGATGCTTTATGCTTTTTCCTTGCTCCGCA
GCGTCATCATGCATGATTTGTTGCGTGATCATTTTTCTTGCGCCGTAGCG
TGATCATCCGTTTGTCGCAAGGCCCTTTTCGCTATCTTGCGTGTTTCCGT
GCTTTTCCCCCCGTGTGGTCGCTGCGGTTATTTGGCGCACGATGTCCATC
ATCGACGCAATGGAAGAAGAGGCGTTTGTGAGCCGCACGCTGCTATTGCA
AGCTATGATACTGCAGGTGTATCCTCGCTCGGTGGGCGTGTCCCGTGCAT
GTCGTGACCGAGCGCGGTATCTCAAGACGGTGTGCGTGTGCCCTGTGTCT
CTCCTGATCACTGGGATTCTCCCTGCTGGAAAAGAGGCATCTTGCCCCCC
CGAAAATGAAACGAAGTAACCAAGACGTGAAAGACAGGTTTTGTAGGCTT
TGAAACAGCAGTTCGTAATAGGAAACGGAGATCGGATCTTCATTGGAAAC
GGAGATCGGTTGAACGGGAGGCCGCGACGAAGCATATGTGTGCTATTTGC
ATCTTGTGCCTGACGACCTCATCCCGGCCAGACCCGCCGCTTCGGAAATG
TACCAATGCTGGCCGTCCGAATTCCTTCCACCATGCCTCATGCAATGCCC
CCCCCCTTTGGCGATGGCCCCCTTTCCTCGGGAAAACGTGGGCATGTGCG
GTGACACGCACGACCGCACCGCATAAGGTATGACACATCACCGCAAGCCA
CGCACGCCCCTTACACCTCTGAAGTAAAGGGGGGGAGGCACAGGCATAAA
AGGGCAAAAGGAGCGTACGCGTGTACGCAAAGTCAAAGTCTACCTTTGCT
GACCTCTTACGAAAGAATCATCCCCGACGACGGAGTATACACGTGTTGTA
GTGTAACATGCACTTGTCCACGAGCCACCAACCGCGCACCGCGATGGCGG
ATCGCACATGAATCCATGAAAGACGCAAGCAGGTGATCAACGGCTATCAC
TGCCGATGACCAAAACAGACGCTATGCCCACAAATCAGAGACACCAAACA
GCCGATAACGTCCTGGCACCATCCGTTCGACACCTGTGCTGCGCGTGGTC
AGCCACGTACTGTTCAGTCTTCTACGGTCACCGCTGCGTTGCGGTGCCCT
GCGACAGTCCGTGAGACAGACTCGGCGCACCGGTGGCCGAGGATGCCGCA
GCGCTTTGGAGCGCGTAGGTCCTTGAGGACGTGGCGAACTCCCCGTTCAC
CAGCCTGCGCTTGTGCTGGTGCACTCCCCTCTTGCGTCCCGCCTGCCCGT
CGGCGCGCTTGAGCTTGCGGTGCGTGGGGTCAGCCACGACGGCATCCCAC
ACGGGGGGGGCGACGCGAAAACGCGGGTCCGAGGCCGCAGCGCGGTAGCG
TGCCAGGAGGAAGCCCCTGTCATTGAGCTCGAGCGCCCTCCAGTGCTGGT
CGGTGGCTGCCGCGAAAGCGAGGCGCGGCGTTTAGAGGCGTGCTTTTGAA
AATGAAGCTTTCGAATACTCGCGAGATGTTCATTGCGAAGCAATCTTAAA
TATTGGGCGTCGAGGAAGGAGTGGCTCTGATCATACGTTTAAGAACATGG
TGCGTTGGCTAAGCGGGTCGCCGACTCTCATCCACCCCTGACGCACGACG
TCTCCACTACTGTTAAACGACGTGCCTCGAATGGGAAAATGCGACCAGCC
GAAGAGAAGCGGGCCGAGTCGTGAAAGCCAAAGCTACCGTAATATCATCG
GTGTTGTCCTCCCCAAAACAAATAACAAAAATCGCACAAAAACGTTGTGA
GACCCCTGGATCTTTGCTAAAAAAATTAACGAACTTGTCCCCCCCAAACC
CCTCACTTTTCCGGGGACACGTTTTTGCATTATTGCGAACGTAAATGTGA
ATCCCCGGGGACAAAGACATAAAATCTGCTCAGTTGTCCCCGGGGACAGT
TGCTTTTGCGAAGAAAACGGCAACCCCGGGGACGAACACATTCAACCTAC
GGCATTTCCGCGGTTGCCAGTCGGCGTGATACAGTTCTTGTTGTATCGTG
TTGACTTTGATTAGGAGATCGGACAGGCTAAAAGACTTGTTGGCAATACC
GCAATACCCTCTGTTTTGCCCCCCTCCCCCCCCCTACAAATTTATGGAAG
AGAGAATAAAACGTTTGTGTTGTCCCCGGGGCTGCTGTCCGCGGGGTGAT
TTTACATTCCAAAGAAAAATTGTCCCCGCTACCTCTGAGTTGTTCCCGGG
GTCTTCTCCAGAGAACAATCGCTGATCCTCCAGGGGACAACACAGAGGAT
ATTACGGTAACGGGAAGGCTGCACCAATCCGAAGAGGCAATACGGAGAGG
CAGGGAGGACAGAAGGGCGAAGCCTGTACTGTCCGAAGGAGTCAAGGGGA
GAAGGCGTCAGGGGGCTCACCTCAGCACCGATCATGCTGTCGGTCGTCTC
CGACATGTCAACATCGGGTAGCGGAATGATCACGGCCCCAACTAGATCAC
AGCCTGCCACCTTTATTCCCTGACTACTACCGGTGTGTTTCTACAATCAT
CGTAGAGTGAGGAGAACAACAAAGAGGGAGGGGAGCATCCACAATCTAGC
AAAAGGGGATGCCGCGGATAGATTTTGAATATTGAATTTTGATTTTTAGA
TATTGAATTTCGGATGATGGATTCTGCCTTGCGCAGGAATGCGATCTGCC
TGCATTGGATGCACGCGAAAATAGGAGCGCGGATATGTGTCGAAAGTCAG
TCATCCAAAAATACCTGTAGACATACCCAGCCAACGACAGCAAATTCGAA
GGGGTCAACCGCAGATTAGGACATAGCCTCTCTTCACGCGATTCCGGAGT
TTGGATTTTGACTTTGGATCTGGCGCGCACAACCAGGCGGGCTATTTTCA
ACAAAGGGGAGGAAGCGAGAGACAGGGATGGCCAAATCAACATCATTCGT
CTAGATTCCTAGATTATCGAGACTGGCAATCCCACCTCGTAGTTGGTGAC
CGTGCCCGGGCTGTTTGCTGGAGAAGGGAGAGGTAGCTCTCGAGCCGCTG
GTATCCCACGCTCGTCGCCTGTTCACTCACGCCCAGGACCTTGCGTTCAG
ACGGTTCGCCGTATGCTCATTCATCTCCACGCCGAAGGTACCTTCAGCGT
CTCGACCAGCGATCCGGACGTGATCTTGTGGTTTGCGTTGACAACCACAG
CCCTTTCCGCCGCCATCGCACGCGGACTCGGCTTCTTCCTTCCGCCTGGC
AGTTTTCGAGAACAAAAAGAGCACGACGTCACGCGCAGCGCCCGAGTCGC
TCGCTGGTACATGCGCAAGAAAGGGCCTGGCATCCTTGGACCCGTTTAAG
GCCCTTCGTGATGATGGTCCCGGCGCAGTGGTACAGCTTCTGCTTACTAT
CGGTGCCAAGCTTGTCCGAGATCATGGTGCGATTGCCGGGCAGAAAGGCG
CATGCCGGAAAAAAGGCCTCGTTCCGCTGCAGTTCAAGCGGTCACGGCGT
CGCTGAACGTGTCCCCGACCGTCAGCAGAGTGGCCGGCAGGGACGCATTG
CTCGGCGGAATTGCCGAGGTGTTGCTCGGCGGCAGCGCCGACGCCATTGG
CTTTGAGGACTGGCTGCTGTCGGACGCCGACAGCGCGTGGTGTGCACCGA
ACGCGTGTGTGTGGTGGTGGGGCACAAAGCGGGAATAGCACCGAGAACTG
ATCTGTTCGTCTAAAGCGGAGGATCTTTATTCGAGGTCTCTTC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig5:4384285..4389777+

>mRNA_P-fluviatile_contig5.11324.1 ID=mRNA_P-fluviatile_contig5.11324.1|Name=mRNA_P-fluviatile_contig5.11324.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig5:4384285..4389777+ (Porterinema fluviatile SAG_2381)
ATGAACTTCCAGTCTTGGACAGCTCTTCTCGCTCAGATGAACTTCCAGTC
TTGGACAGCTCTTCTCGCTCAGTTTTCGAGAACAAAAAGAGCACGACGTC
ACGCGCAGCGCCCGAGTCGCTCGCTGGTACATGCGCAAGAAAGGGCCTGG
CATCCTTGGACCCGTTTAAGGCCCTTCGTGATGATGGTCCCGGCGCAGTG
GTACAGCTTCTGCTTACTATCGGTGCCAAGCTTGTCCGAGATCATGGTGC
GATTGCCGGGCAGAAAGGCGCATGCCGGAAAAAAGGCCTCGTTCCGCTGC
AGTTCAAGCGGTCACGGCGTCGCTGAACGTGTCCCCGACCGTCAGCAGAG
TGGCCGGCAGGGACGCATTGCTCGGCGGAATTGCCGAGGTGTTGCTCGGC
GGCAGCGCCGACGCCATTGGCTTTGATTTTCGAGAACAAAAAGAGCACGA
CGTCACGCGCAGCGCCCGAGTCGCTCGCTGGTACATGCGCAAGAAAGGGC
CTGGCATCCTTGGACCCGTTTAAGGCCCTTCGTGATGATGGTCCCGGCGC
AGTGGTACAGCTTCTGCTTACTATCGGTGCCAAGCTTGTCCGAGATCATG
GTGCGATTGCCGGGCAGAAAGGCGCATGCCGGAAAAAAGGCCTCGTTCCG
CTGCAGTTCAAGCGGTCACGGCGTCGCTGAACGTGTCCCCGACCGTCAGC
AGAGTGGCCGGCAGGGACGCATTGCTCGGCGGAATTGCCGAGGTGTTGCT
CGGCGGCAGCGCCGACGCCATTGGCTTTGA
back to top