mRNA_P-fluviatile_contig5.11254.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig5.11254.1
Unique NamemRNA_P-fluviatile_contig5.11254.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig5.11254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig5contigP-fluviatile_contig5:3822953..3823777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.8636923-CDS-P-fluviatile_contig5:3822952..38230651622816772.8636923-CDS-P-fluviatile_contig5:3822952..3823065Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 3822953..3823065 +
1693569712.6331542-CDS-P-fluviatile_contig5:3822952..38230651693569712.6331542-CDS-P-fluviatile_contig5:3822952..3823065Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 3822953..3823065 +
1622816772.8745353-CDS-P-fluviatile_contig5:3823546..38237751622816772.8745353-CDS-P-fluviatile_contig5:3823546..3823775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 3823547..3823775 +
1693569712.6463838-CDS-P-fluviatile_contig5:3823546..38237751693569712.6463838-CDS-P-fluviatile_contig5:3823546..3823775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig5 3823547..3823775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig5.11254.1prot_P-fluviatile_contig5.11254.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig5 3822953..3823775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig5.11254.1

>prot_P-fluviatile_contig5.11254.1 ID=prot_P-fluviatile_contig5.11254.1|Name=mRNA_P-fluviatile_contig5.11254.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=114bp
DGAAAAAEWDFSGQASGAIEVTSQQRHPRLKVNPYVASRIAATRQAETVP
TTSGEKRALPTPAGGGPKGWEVWRNEEAMPPMPPQRKSTWVSMPSPRGGS
ARGGGEGGGECEGK
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mRNA from alignment at P-fluviatile_contig5:3822953..3823777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig5.11254.1 ID=mRNA_P-fluviatile_contig5.11254.1|Name=mRNA_P-fluviatile_contig5.11254.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=825bp|location=Sequence derived from alignment at P-fluviatile_contig5:3822953..3823777+ (Porterinema fluviatile SAG_2381)
GACGGGGCGGCGGCGGCGGCAGAGTGGGACTTCTCCGGACAGGCGTCAGG
CGCGATCGAGGTGACTTCACAGCAGCGGCACCCTCGGCTCAAGGTCAACC
CTTACGTCGCGAGGTGAGGTGGGGGGGGGCGGTATAAGGCGATTTGCTGG
GCGTTTGGCGAGGCCGAGTGAGGAACAAGAGGAAGCGCGGTAAAGTTGGA
GAAGGCTGCATGCGTGTTGTACTTTTTTCTCTCAATTTTTTTTTGTGTTA
CGTGTCTCGTTGCGCGTCGCGCTCCCCTCCTATGCCGAAGGGCAAGAGCT
CAAAGGCGGCAGCAATGTGATGCCAAGCAAGCTCACGGCAGGCGGGACGG
GAATCCACCAAGGCAGCGCGGCTGCACCAATGGCGTGTGCGGTATTGTCC
TTCAAAATTGCCAAACGATAAACTTCTCGCCGAAGCTGCCACCACTCGAC
CACGTTACTGTCTCACTTCGCCAAGTGATGTCGCAATATTTTTTATCTTG
AGGCCGAGAGGGCTTTTTTACGCAACCCGCCCCCCTCCGGCCCTTCCCTC
ACCCACTACGGCCGTCGCAACGTTGACCGTGCAACACCGGGTAGCCGAAT
CGCCGCGACCAGGCAAGCCGAGACGGTGCCAACAACATCGGGGGAGAAGC
GCGCGCTGCCGACACCCGCCGGCGGCGGTCCCAAAGGCTGGGAGGTGTGG
CGCAACGAGGAAGCGATGCCCCCGATGCCACCCCAGAGGAAAAGCACTTG
GGTGAGCATGCCTAGCCCGCGCGGAGGCAGTGCCAGGGGCGGCGGCGAAG
GCGGGGGTGAGTGTGAAGGGAAAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig5:3822953..3823777+

>mRNA_P-fluviatile_contig5.11254.1 ID=mRNA_P-fluviatile_contig5.11254.1|Name=mRNA_P-fluviatile_contig5.11254.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=684bp|location=Sequence derived from alignment at P-fluviatile_contig5:3822953..3823777+ (Porterinema fluviatile SAG_2381)
GACGGGGCGGCGGCGGCGGCAGAGTGGGACTTCTCCGGACAGGCGTCAGG
CGCGATCGAGGTGACTTCACAGCAGCGGCACCCTCGGCTCAAGGTCAACC
CTTACGTCGCGAGGACGGGGCGGCGGCGGCGGCAGAGTGGGACTTCTCCG
GACAGGCGTCAGGCGCGATCGAGGTGACTTCACAGCAGCGGCACCCTCGG
CTCAAGGTCAACCCTTACGTCGCGAGCCGAATCGCCGCGACCAGGCAAGC
CGAGACGGTGCCAACAACATCGGGGGAGAAGCGCGCGCTGCCGACACCCG
CCGGCGGCGGTCCCAAAGGCTGGGAGGTGTGGCGCAACGAGGAAGCGATG
CCCCCGATGCCACCCCAGAGGAAAAGCACTTGGGTGAGCATGCCTAGCCC
GCGCGGAGGCAGTGCCAGGGGCGGCGGCGAAGGCGGGGGTGAGTGTGAAG
GGAAACCGAATCGCCGCGACCAGGCAAGCCGAGACGGTGCCAACAACATC
GGGGGAGAAGCGCGCGCTGCCGACACCCGCCGGCGGCGGTCCCAAAGGCT
GGGAGGTGTGGCGCAACGAGGAAGCGATGCCCCCGATGCCACCCCAGAGG
AAAAGCACTTGGGTGAGCATGCCTAGCCCGCGCGGAGGCAGTGCCAGGGG
CGGCGGCGAAGGCGGGGGTGAGTGTGAAGGGAAA
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