mRNA_P-fluviatile_contig23.5238.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig23.5238.1
Unique NamemRNA_P-fluviatile_contig23.5238.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig23.5238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig23contigP-fluviatile_contig23:2178007..2182253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1729
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig23.5238.1prot_P-fluviatile_contig23.5238.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig23 2178765..2182191 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815993.5243287-UTR-P-fluviatile_contig23:2178006..21787641622815993.5243287-UTR-P-fluviatile_contig23:2178006..2178764Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 2178007..2178764 -
1693563970.8235667-UTR-P-fluviatile_contig23:2178006..21787641693563970.8235667-UTR-P-fluviatile_contig23:2178006..2178764Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 2178007..2178764 -
1622815993.5911198-UTR-P-fluviatile_contig23:2182191..21822531622815993.5911198-UTR-P-fluviatile_contig23:2182191..2182253Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 2182192..2182253 -
1693563970.867813-UTR-P-fluviatile_contig23:2182191..21822531693563970.867813-UTR-P-fluviatile_contig23:2182191..2182253Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 2182192..2182253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815993.5379853-CDS-P-fluviatile_contig23:2178764..21788301622815993.5379853-CDS-P-fluviatile_contig23:2178764..2178830Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2178765..2178830 -
1693563970.835022-CDS-P-fluviatile_contig23:2178764..21788301693563970.835022-CDS-P-fluviatile_contig23:2178764..2178830Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2178765..2178830 -
1622815993.550368-CDS-P-fluviatile_contig23:2180603..21808491622815993.550368-CDS-P-fluviatile_contig23:2180603..2180849Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2180604..2180849 -
1693563970.8440638-CDS-P-fluviatile_contig23:2180603..21808491693563970.8440638-CDS-P-fluviatile_contig23:2180603..2180849Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2180604..2180849 -
1622815993.5663345-CDS-P-fluviatile_contig23:2181159..21816631622815993.5663345-CDS-P-fluviatile_contig23:2181159..2181663Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2181160..2181663 -
1693563970.8521478-CDS-P-fluviatile_contig23:2181159..21816631693563970.8521478-CDS-P-fluviatile_contig23:2181159..2181663Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2181160..2181663 -
1622815993.5797844-CDS-P-fluviatile_contig23:2182098..21821911622815993.5797844-CDS-P-fluviatile_contig23:2182098..2182191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2182099..2182191 -
1693563970.8597312-CDS-P-fluviatile_contig23:2182098..21821911693563970.8597312-CDS-P-fluviatile_contig23:2182098..2182191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 2182099..2182191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig23.5238.1

>prot_P-fluviatile_contig23.5238.1 ID=prot_P-fluviatile_contig23.5238.1|Name=mRNA_P-fluviatile_contig23.5238.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=303bp
MQSKVDAKPKRKIFGSVSFKKSFMAKAAAPPVSRANNVLHVVVSGMSSLS
GDVSPASIDCSAPEGPLEAEETSKLPMGEPSETEDTVANARGESPVAGHP
ADFAPVSRDRMQFNAVTLSRGGGLSEAVSCASSGGSESGAAAGEGGTPTL
PLDDLHAVAIENDGIAPDALGTSSREDKGDHESFVGVTGPSDNGKTNAKV
SRARARHVVIPGTGNLPGETPVPSIDNSGSSSAGKVRTFQPSIGDSENSR
ADASFEEASAHSSDLPSLGADDAKKGAEGVKLPSEACVSGNQDSATMGTS
SE*
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mRNA from alignment at P-fluviatile_contig23:2178007..2182253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig23.5238.1 ID=mRNA_P-fluviatile_contig23.5238.1|Name=mRNA_P-fluviatile_contig23.5238.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4247bp|location=Sequence derived from alignment at P-fluviatile_contig23:2178007..2182253- (Porterinema fluviatile SAG_2381)
CCCCGCCCCACTCTTCCTCGTACTCCAGACACTTGTCAAGACACCCCCGG
GAGTGCAGAATCATGCAGTCAAAGGTCGACGCGAAGCCTAAAAGGAAGAT
TTTCGGCAGCGTGTCGTTCAAAAAGTCGTTCATGGCAAAGGCGGCTGCTC
CTCCTGTGAGTTTTCCTCGTCGGAGGTGGATGCCAAATAATTATCGCCGT
GTGTAACGTGTAAGCGCTCAACACGACAACGGCAAATGGTTATCGCTCGG
TTTGTCGTCGTTTACGAGAAGATTTCGTCTTTGATGCGCAATGCTCGCTG
CCCTCCGACTTTATGTTGAGGCTTGTTTGCACACAGCCCACTTCGCTTCT
GGAGTTGGGTGTTCACCTTGTACAAAGTCACTGAAGCCAGCTGAATTCTA
CCGCACGACGCGAAATCGAAGATACACCGTGCTGGCTGTACGCCGACGTA
TGGAACGTTGGCCTTTTCACGCCTGGTTGCGTGCTTACCTTTTCCCGCTG
ACAGCGCCTGTGTGCCAGCGAAGCGACCCCCTCTCGATGCATTTGTCCAA
TACGACCAGAAATGTTCGAAACTTGGTCGATGTTGCCCAGGTCTCGCGAG
CGAATAACGTGCTTCATGTGGTCGTATCCGGCATGAGTAGCTTGAGTGGC
GACGTGTCACCGGCCAGCATCGATTGCAGTGCCCCAGAAGGACCGTTGGA
AGCGGAGGAAACGTCGAAGCTACCGATGGGCGAACCTTCTGAAACTGAAG
ACACCGTTGCCAATGCACGAGGTGAATCGCCGGTGGCTGGACACCCTGCC
GACTTTGCCCCTGTCTCAAGGGATAGGATGCAATTCAACGCCGTTACTTT
GTCCCGCGGGGGTGGCTTATCTGAAGCCGTCTCATGCGCCAGCAGCGGCG
GTAGCGAATCGGGTGCGGCGGCGGGAGAGGGAGGCACTCCGACGCTACCG
CTGGACGACCTTCACGCCGTGGCGATCGAGAACGACGGCATCGCGCCCGA
TGCCCTCGGCACATCGTCCCGGGAGGACAAGGGAGACCATGAAAGCTTCG
TGGGCGTTACGGGCCCGTCTGACAACGGGAAGACTAATGCAAAGGTAGCG
AAGGACCCTGCCAATCGGCCCTTCACGCGTTCTTGAAAGTTGGCCGTTCT
GCCCGGATCTGATACAGGCAACCTGTGCTGTTGCGATTTGGACGAACGAG
CAGTATGCATGAGGCTCACCCGACCCTTTCTCACAGGGTGAGGCTTATTC
GAGGAAGATCTATTCGATCTTGCGGGATCTTCGTGTGCATTTCGCAGATT
TCGGAAGCGACGTGCGAAGACGGTCGGAGATGTTCCCCGACGCCCTGCCT
TGTTGTCCCACCCACAAGCGAATGCTCATCAATCACGTCTTTAACTTTTC
ATAGGTCTCGAGAGCCCGGGCACGGCATGTCGTCATCCCAGGTACGGGAA
ACTTACCCGGCGAGACACCAGTACCTAGCATCGACAACAGCGGCTCGTCA
TCAGCGGGAAAGGTGAGAACTTTTCAACCTTCGATTGGCGACTCGGAGAA
CTCGAGGGCCGATGCCAGCTTTGAAGAAGCTTCCGCCCACAGTTCGGACT
TACCATCGCTGGGGGCGGACGACGCCAAGAAGGGCGCGGAAGGTGTGAAG
GCGAGTACAGCTTTTCCGCGGCTGATGTTCGCGCACTTATTTTGCGTGAG
GACTTCGCGCTCCCGCTCTCTTCTCGTGGGTCGTGATTCTACTGAGAAGC
CGATCTTTTTGTTTCGTTTGTATTGAGGTGGCAACCGACCGATGTATGCA
CGTGCGCAGGGTATGCCCGCAAGATGCTCCGCGAAAGCGAGCTTAAACAA
TATCGCGGTTACCCCACCGGTGTATGCCGAAGTCTGCTGCGATAGTCCTC
GGCGATTTACTTGGATTGCTTGTGTGTGGCGTCCGCAGATGTTGTTCATG
CCAATCTGACGCCCCGTGGGTTTTGGGGCAAATTCTCGGACGCCGTCGAG
TTGCAAAGTGGCGATGCTCCTCCAATGATGGACCTCGCGGCCGGCGACGC
AGATGACTCAAGATGTATTCAGACCGCTAATAACCTGTCGGCAAACAAGC
CGAATACAGGCGGGTGTGCGTGAGTCGACCGCGTGAATACACCTGTTGGT
CACGGTTCCGAGGAGTGTCCGACATCGTACAAGATTCGATACCTGAAAGT
ATTCCTGAAATCAAAATGATAAAAACCGCCGCAGTCAAACTCGCGCGGCA
ATGCACGAAACCCTTTTGCACCCACCCTTCACAAGATAACTCGCTGAATG
AATCATGTTACTTTGCGCTTGACGCAACGCTTTCCAGCTTTGCCCGGCGA
AATTCCGGCGTGCTCCTTCCGGTTTACAAGGATACAAGGGTAACAGTTCA
CGAGTGTTATTTCAACAACCTCCCTCGCCCCTCCCCGCCCCCCGTTGGGT
ACATCGTCCGCGAAATTGTGCCTCGCAAGTTGACCGATGATATTCGCAAA
AAAATAGCCGCAAGCGGAGAGGGATCACGTGCGTATCTTTGCTTCTGTGC
ATTAGGCTTTCGCATCAGCACTTCTGTGAGAGGAAAACCAAGCGAAAAGG
ATTGAAACAACAGGTACGGTGAGAGGACAGGCCCTCGCCGGAGACGTCAA
CCACAAACACTTCCTCGTCCGACACCGCTGTGAAACGACTTACCTTGCAA
ATTATTTGAGTATCCCGCATCACAACAGTAAGCATTCCATCGCGTTTATA
TCGCGCCCTTCTCATTCGCTAGTGTTACGTGGCATGCGCCTTGTTTGATC
GCAAAAGCGCAACACCGATATAGTATCGAAGTGCGATAGCAATACCAGCA
CAAACGTACATGTCAGTCTCCCCAGATAGAGAGGCCTGCTTGGGTGTGTC
TTCAGACATTGTATCGAACGAGAACCAGGAGATTTAACCCCTCACTTACC
AAATCTCCTCGTAGGTTGTGTTGGGTAAGGGTGGAAGCACCAACGCAGGG
GTATGGACTATGAATGGCAGCAAGCGTATGGCAAAAGGGGCGCTATCGAT
CGATGTGTACACGCTCGACTGCCCTCAAATGAGGTCACGAGGGAGAACTC
ATTTCTGCCAGGAGAAAAGATATTGACGATCGGTACGGAACAAACACCGA
ACGCACATTGAGCTGAATTGCACGGAAATGAGCAAAGGCACTTCTTGGAT
GGGAGTATGGCGTTTTTGTACGTCGTCATCTGTTTGTGGAGAAGGCTTGA
TTGGTTGAAGAGTCATATGTCTTAGGATGTGTCAAGCAACACCCTTCCGG
ATTGAAAAAAACTTTCAGGCATGGGCCGATTCCGCCTAGCTGAGCAAGGT
TGTTGTGCTGAACTCCTCGCTGATCACATGTCCTATTGTTCGGCGCATCA
CGACTTTCTGCTTTTCGATGCAGCTCCCAAGCGAAGCTTGTGTGTCCGGG
AACCAGGATTCTGCGACCATGGGTACATCTTCAGAATAGGTGCCCGGCGT
CGCGTACGTCGCCGACGAAGCCGCGCGATATCGCCGCAAACGCCCCATTT
CCGTGCTGCGGGCCGACCAGACCCAATATCGACATTGATTTGCGCCTACC
TGAGCCGTTGGGAGCTCAAGTGTCATCGACAGCTTCCTCCGCCCATTGAA
TCATCGGGAGTAAATAAACATGAACCGACCCATTGAGTCTTCATTTTTAC
TTATGGTACCGGCAGTGGGAGTTGAACGCAGCACACACCAACATTATATG
CATCACGTGAGGCGCTCGCCTAAGTGGATAATCCGCGTTGTAAAGATATG
GTAGAAGCAGAGTTGAAGCTCTCACCTTATTTCTGCGATGGAGAGGGGTA
AAAAATCAACGGCACGTAAGGTGTTGGGATCCGGGCACGAGAGCAGCCGT
ATTGTTCATGACGTCTTGAATTAAGTTGAAAACACCCGATGATTGCTGTG
TCGATTTCCCTCTGCCCGTTGTTTATTCCACCCCCTTCGCCCTGCAGGCG
ATGTAGCGTCGTGTACTGTACATTTAGCCTCGCCGAGACATTGTTCTTAC
GTTTTTCTGGGTCGATGGTGATTGCAGCAGGTTGTTGCGGAATAGCGTTA
CACGACGGCATGGAGCGATGGGGGGCACGAGTGTTTCGTGCCAAGCAACA
GGAGCTGTTCGCAGCTGCCGAATGCCCTCCTTTTTGTGGCCCTCATGTCA
TCATATCTCCGCTGCATCAAAGCTACAAAGCCCTTCGTGAACGCGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig23:2178007..2182253-

>mRNA_P-fluviatile_contig23.5238.1 ID=mRNA_P-fluviatile_contig23.5238.1|Name=mRNA_P-fluviatile_contig23.5238.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1818bp|location=Sequence derived from alignment at P-fluviatile_contig23:2178007..2182253- (Porterinema fluviatile SAG_2381)
ATGCAGTCAAAGGTCGACGCGAAGCCTAAAAGGAAGATTTTCGGCAGCGT
GTCGTTCAAAAAGTCGTTCATGGCAAAGGCGGCTGCTCCTCCTATGCAGT
CAAAGGTCGACGCGAAGCCTAAAAGGAAGATTTTCGGCAGCGTGTCGTTC
AAAAAGTCGTTCATGGCAAAGGCGGCTGCTCCTCCTGTCTCGCGAGCGAA
TAACGTGCTTCATGTGGTCGTATCCGGCATGAGTAGCTTGAGTGGCGACG
TGTCACCGGCCAGCATCGATTGCAGTGCCCCAGAAGGACCGTTGGAAGCG
GAGGAAACGTCGAAGCTACCGATGGGCGAACCTTCTGAAACTGAAGACAC
CGTTGCCAATGCACGAGGTGAATCGCCGGTGGCTGGACACCCTGCCGACT
TTGCCCCTGTCTCAAGGGATAGGATGCAATTCAACGCCGTTACTTTGTCC
CGCGGGGGTGGCTTATCTGAAGCCGTCTCATGCGCCAGCAGCGGCGGTAG
CGAATCGGGTGCGGCGGCGGGAGAGGGAGGCACTCCGACGCTACCGCTGG
ACGACCTTCACGCCGTGGCGATCGAGAACGACGGCATCGCGCCCGATGCC
CTCGGCACATCGTCCCGGGAGGACAAGGGAGACCATGAAAGCTTCGTGGG
CGTTACGGGCCCGTCTGACAACGGGAAGACTAATGCAAAGGTCTCGCGAG
CGAATAACGTGCTTCATGTGGTCGTATCCGGCATGAGTAGCTTGAGTGGC
GACGTGTCACCGGCCAGCATCGATTGCAGTGCCCCAGAAGGACCGTTGGA
AGCGGAGGAAACGTCGAAGCTACCGATGGGCGAACCTTCTGAAACTGAAG
ACACCGTTGCCAATGCACGAGGTGAATCGCCGGTGGCTGGACACCCTGCC
GACTTTGCCCCTGTCTCAAGGGATAGGATGCAATTCAACGCCGTTACTTT
GTCCCGCGGGGGTGGCTTATCTGAAGCCGTCTCATGCGCCAGCAGCGGCG
GTAGCGAATCGGGTGCGGCGGCGGGAGAGGGAGGCACTCCGACGCTACCG
CTGGACGACCTTCACGCCGTGGCGATCGAGAACGACGGCATCGCGCCCGA
TGCCCTCGGCACATCGTCCCGGGAGGACAAGGGAGACCATGAAAGCTTCG
TGGGCGTTACGGGCCCGTCTGACAACGGGAAGACTAATGCAAAGGTCTCG
AGAGCCCGGGCACGGCATGTCGTCATCCCAGGTACGGGAAACTTACCCGG
CGAGACACCAGTACCTAGCATCGACAACAGCGGCTCGTCATCAGCGGGAA
AGGTGAGAACTTTTCAACCTTCGATTGGCGACTCGGAGAACTCGAGGGCC
GATGCCAGCTTTGAAGAAGCTTCCGCCCACAGTTCGGACTTACCATCGCT
GGGGGCGGACGACGCCAAGAAGGGCGCGGAAGGTGTGAAGGTCTCGAGAG
CCCGGGCACGGCATGTCGTCATCCCAGGTACGGGAAACTTACCCGGCGAG
ACACCAGTACCTAGCATCGACAACAGCGGCTCGTCATCAGCGGGAAAGGT
GAGAACTTTTCAACCTTCGATTGGCGACTCGGAGAACTCGAGGGCCGATG
CCAGCTTTGAAGAAGCTTCCGCCCACAGTTCGGACTTACCATCGCTGGGG
GCGGACGACGCCAAGAAGGGCGCGGAAGGTGTGAAGCTCCCAAGCGAAGC
TTGTGTGTCCGGGAACCAGGATTCTGCGACCATGGGTACATCTTCAGAAT
AGCTCCCAAGCGAAGCTTGTGTGTCCGGGAACCAGGATTCTGCGACCATG
GGTACATCTTCAGAATAG
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