mRNA_P-fluviatile_contig23.5183.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig23.5183.1
Unique NamemRNA_P-fluviatile_contig23.5183.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig23.5183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig23contigP-fluviatile_contig23:1485400..1488978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size105
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig23.5183.1prot_P-fluviatile_contig23.5183.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig23 1485466..1488978 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815992.551298-UTR-P-fluviatile_contig23:1485399..14854651622815992.551298-UTR-P-fluviatile_contig23:1485399..1485465Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1485400..1485465 -
1693563964.405611-UTR-P-fluviatile_contig23:1485399..14854651693563964.405611-UTR-P-fluviatile_contig23:1485399..1485465Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1485400..1485465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815992.5639853-CDS-P-fluviatile_contig23:1485465..14854831622815992.5639853-CDS-P-fluviatile_contig23:1485465..1485483Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1485466..1485483 -
1693563964.4154773-CDS-P-fluviatile_contig23:1485465..14854831693563964.4154773-CDS-P-fluviatile_contig23:1485465..1485483Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1485466..1485483 -
1622815992.5730116-CDS-P-fluviatile_contig23:1488891..14889781622815992.5730116-CDS-P-fluviatile_contig23:1488891..1488978Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1488892..1488978 -
1693563964.4248059-CDS-P-fluviatile_contig23:1488891..14889781693563964.4248059-CDS-P-fluviatile_contig23:1488891..1488978Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1488892..1488978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig23.5183.1

>prot_P-fluviatile_contig23.5183.1 ID=prot_P-fluviatile_contig23.5183.1|Name=mRNA_P-fluviatile_contig23.5183.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=35bp
MLKLFKKTIAAVRSEGGRRDDKWSDTRRGDKTRQ*
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mRNA from alignment at P-fluviatile_contig23:1485400..1488978-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig23.5183.1 ID=mRNA_P-fluviatile_contig23.5183.1|Name=mRNA_P-fluviatile_contig23.5183.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3579bp|location=Sequence derived from alignment at P-fluviatile_contig23:1485400..1488978- (Porterinema fluviatile SAG_2381)
ATGTTGAAGCTTTTCAAGAAGACCATCGCCGCCGTTCGAAGTGAGGGGGG
CAGGAGAGACGACAAGTGGAGCGACACGAGACGGGGAGTAAGTTGCGGTA
CAAATTACACAATTAATGCTTTTGTTGCACGGGAATTACGCGGCCCTCTT
GGTTGGATGTAAGTGGTTCATACCATTGGGGTTTTGGTTGCACGAGACAG
CCTTGTTGGGTTCCTGCCATTTGGCATGGGAAAGGTCTTGGATACTGGAC
GAGGGAGACGACAGATGCCATCCCGATCTCTCCGCAGAACTCACTTTCGT
CTGTGGGCTGATCAACTCTAGATGCGGTCAATTCCCGTGGTCACAGCATA
CCCTATCAAAGGTAACCAAAATAGGAAAAATTGCCAAAGTGGGCCCGGAG
GAAAGTGATTGTGTCTGGTCTTAAGACCACAGGCCCGGCATTTGTGGAAG
TCATGCACAATTTGAGAAAACCAACAACACACACCTACGGGATACGAGAA
CACAGCCTGCCGAACACAACACACACGCGGCCACACACACGCACCTGTGG
AAACTACATCACACACAAACAAAAAAAACAAAAACAAACTCTACAGCAGT
ATGTACAATGCAAAAAATGCGAAGGCTTGAAAAGGCGTCAGCTCGAAGTC
ACCCATGAAAAGCAGGAAGGGTGTGGCAGTGAGAGGTGTCTCTCTCCATG
AGGGTTGTGAATTTGCGAGGATCTGACGATGACGCCACGAGAGACGCAAA
CATTTCCTCTTGTCCCCACCTTCTACCCCTCTTGGCATACGCACGAACGA
CACTCCCTCGGGCCACAGCTTGGTCACAATCCGGTCTGTCGAGCGGTCGC
ATTGCGCGCGCTCTTGTTCCGCGGCGAGGAAACACGGACGGGATTATATG
ATTATATGTGCGTGTTTTTGCAGGACTGCTGTCGATGTCGTTTTGAGAGA
AAGACGGGCGCAAGCGTTGTTTCGGAGATCTCGCGCAATCTACGATGAAG
AACTTCCAATACTGACTGTACATGACCTAGGGCAAGAAGGGAGGGCGATT
GAGAGAGCGAGCGTCGAAACGCACACCCCTTGCGCATGCTCTCAATTCAG
TTGGCTGCGTGTGACGAAGCTTCTTTTTCTAAAACGGCTTGGGTACGAGA
GAAAGTGGCCGGCAGGTGAGGATGATCAGCGTCGACATTTGTCCGTGGGT
TTTGTGTTGAAAGCTTCGATGTGCGTGGGCGTCTAAAGCAACGTGATCCG
CGCGACACTGCGGATCGCTTGAGATATCGGCACCATGATGGACTGGAAAT
GGCTCGCTAGTAAAGGTTGCCCCGAGAGAATCGCTCGGCGAGCGTAGTGT
GTCGAGAGTCGATGGCGTGCGGAGTAATTTGCAACTTAGTACAGTACTTC
GGAGTAACAATACAATGTAAACGAATAAAAGTAGCAAATCGCCGCGCGCG
CACGCAGGGAGGGCCCCCTCCCCCTCGTCTCTCCAACTCCTTTTCCCACT
GTTAGCAGCCAAAACGTGTGGATTTCCGCCGATAGGGGTGTAGCGTGTCG
CACGCAGCAATCTACCTTACGAGTCACGCGGGACGGCAGCTTTTCAACCG
CGTGTGCGTGCAAGCAGCGGAAGATCGCCCCCGTTCAAAATTTGACTGAT
CTCGTCACTTTCCTTCTTCGTCTGTTGGGCATCGTAGGTGTTGGGCACCG
TAGGTTGCACGACGCTTTTTCGAAGCTCCGCTTCCGTTTAACATTCAACG
CAATGCACACGCGAGCAGTAACTATCGCGTGATAAACCAGGCGCTGGTAC
ATTCACCGCAGCGGCACCGATCTTTGAATTGGTGGCAAGTGGGGGTACTC
ATGTTTTGCATGCCTTCGTTGTTAGACCATTGACCACGCGTCCTCGAGAG
GACGGAGCATTGTTCCCGCAGGATCGATCACCGATGGCCAATTGTTCCTT
CCTACTTTGCCAAAGGTGGCTCAAAAATGTTTTCCCTAACCTGTCTACTT
TATACCTGTCCTTGCTGGGCCACATCTTAAAACGAGTACCGCTACCGTCT
TCTCCTCTTTGTTCCATGCCTCAAAACTTCTCTCTGTACCCATTGTCTAC
TTTTTCCAGCTCAACCATGTACCCTTCTCTCTCCTGATCGAATAACGGGC
ATTCCGCAACTACATGTACCCGGTCTTCGCATTCGGCACCGCTTTCACAT
TTGAACTTGCCATCGTCGTCGTCTACATTCCTACACCTCCTTCTACGTTC
CCGAAGGTCAATGTCGCCCGTTCTAAATTTGACCTTCATCTTTGTCCCTT
CATCCAATGGTCCGTTCAGGTACTCCTTGATCCCTATTCCTTCGTTCAGC
CTTCCGTACACTTCTAGAACCTCCTTTTCCTTGGTCTCTTTCCGCAAGCT
CTGGTCTTCTCTATTTTCAAAGTTGGGGGAGGAGAGAAAAAGGAAAGCCT
TCAGGGGGTACATCCGTAGGCCGCGGATACTCTCAAAATTCCACCAATCG
TTCGCCGATGACCATGCGCCAAAGTGACGAAGCGGCCGTTCACTTTTAGT
GCTGCATTGTCGTCATTTCCCCCCTCGTCAGCTGTGACCACGGAAGTCAC
GACAGCGGTTCCTGTCGGAGAAAATAATGTTCATGTGTGTCTTTGTTGTC
TCGACGTTCGGTTGGTCTGTTATCTGCAGGTTTGTTTGTTCTCGTGTTTC
AATGCAAATGAAACACGTTGGAGCAGACACATGTCCTTTCTTACTTGACG
CAAACGCGGCGAGCATGGTGATGTTCGCGCCAGAATCCTGCAGGACACAC
AGCCCCCACACCGACGCAAGCAAGAGAACACACAGATGGTGGTTGCACAC
CGAAGCTATCACATCACGGCCATCACGATCGTAGCATGTGCAACTGGGTA
ACAAAGATTCCTCGGCGTATGCACACGGCAAAGGTGCAGACCCTGCGCCC
ATCACGGAGCGTGTGCTTTGCCGCTCGTGCCGGCAGACTGCTCAGAGCTG
CTGCATATCACAGCTCGCAGAATCTTTCCCAACTTTTGCATGCAGCCTTG
CTTCTGTCACCGATCAAGGACTATGGATGAAAACAGCTTTCTTCTCAAGT
ACTCATTGCGAAATAACGTTTTCTCAGCAGGGACAGCTCTTTTTTGTAGC
ATCGAAACTCGCCCTTGTACCCCAATCTTCATACGTCGCGGCCGATCTCG
TCCCAGTTTGTAACGAGTAGATAAAAGCAGAACGAATTGCACGCTTCCAA
AATCAATAGAATCCAAACTGATCAGCCGTTGGACGCTTCGCGCAAATATG
ACGTAGTACTGCTGCTTAGGCACATTCGAATCTATGCCACTCGAATCCGA
GCGGTATTCCGTTGTCACGAATAAGATAATCTCTCGAAAGCGGACGTTCA
CTTACCCAGTGTGTATCACTCCTCCCGTGCTCCTCTGACTGCTCCTGTGT
GGTGGTGTGTCTCGGCCGGCCGTCTGCGTGCTTGGCTTTTTCCAGGACAA
AACACGACAATAAGCGCCTTCTCGGCTCGCCCCACAGTGAAAAAATCGTC
AGCGAGAAACAAAATGCGCCGGGCGATCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig23:1485400..1488978-

>mRNA_P-fluviatile_contig23.5183.1 ID=mRNA_P-fluviatile_contig23.5183.1|Name=mRNA_P-fluviatile_contig23.5183.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=210bp|location=Sequence derived from alignment at P-fluviatile_contig23:1485400..1488978- (Porterinema fluviatile SAG_2381)
ATGTTGAAGCTTTTCAAGAAGACCATCGCCGCCGTTCGAAGTGAGGGGGG
CAGGAGAGACGACAAGTGGAGCGACACGAGACGGGGAATGTTGAAGCTTT
TCAAGAAGACCATCGCCGCCGTTCGAAGTGAGGGGGGCAGGAGAGACGAC
AAGTGGAGCGACACGAGACGGGGAGACAAAACACGACAATAAGACAAAAC
ACGACAATAA
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