mRNA_P-fluviatile_contig23.5178.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig23.5178.1
Unique NamemRNA_P-fluviatile_contig23.5178.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig23.5178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig23contigP-fluviatile_contig23:1463231..1465094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size778
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig23.5178.1prot_P-fluviatile_contig23.5178.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig23 1463964..1465094 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815992.4706976-UTR-P-fluviatile_contig23:1463230..14633131622815992.4706976-UTR-P-fluviatile_contig23:1463230..1463313Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1463231..1463313 +
1693563964.3584347-UTR-P-fluviatile_contig23:1463230..14633131693563964.3584347-UTR-P-fluviatile_contig23:1463230..1463313Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1463231..1463313 +
1622815992.4826407-UTR-P-fluviatile_contig23:1463468..14636301622815992.4826407-UTR-P-fluviatile_contig23:1463468..1463630Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1463469..1463630 +
1693563964.3672066-UTR-P-fluviatile_contig23:1463468..14636301693563964.3672066-UTR-P-fluviatile_contig23:1463468..1463630Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1463469..1463630 +
1622815992.4931872-UTR-P-fluviatile_contig23:1463835..14639631622815992.4931872-UTR-P-fluviatile_contig23:1463835..1463963Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1463836..1463963 +
1693563964.3770103-UTR-P-fluviatile_contig23:1463835..14639631693563964.3770103-UTR-P-fluviatile_contig23:1463835..1463963Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1463836..1463963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815992.50968-CDS-P-fluviatile_contig23:1463963..14642931622815992.50968-CDS-P-fluviatile_contig23:1463963..1464293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1463964..1464293 +
1693563964.3864417-CDS-P-fluviatile_contig23:1463963..14642931693563964.3864417-CDS-P-fluviatile_contig23:1463963..1464293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1463964..1464293 +
1622815992.5220618-CDS-P-fluviatile_contig23:1465019..14650941622815992.5220618-CDS-P-fluviatile_contig23:1465019..1465094Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1465020..1465094 +
1693563964.3958807-CDS-P-fluviatile_contig23:1465019..14650941693563964.3958807-CDS-P-fluviatile_contig23:1465019..1465094Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1465020..1465094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig23.5178.1

>prot_P-fluviatile_contig23.5178.1 ID=prot_P-fluviatile_contig23.5178.1|Name=mRNA_P-fluviatile_contig23.5178.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=135bp
MEIELRESPNTQGVYVFRKGLPSPSTKTWLKLILVPQAQHMLLVAATTHV
CALFFLSEKQDGTPVTLERGFMFDIKEDVDDTWEAVLHRVDAQLRRQGFT
GKRVPVWGAKCKCDFGVAVSWNSTTPPTIQKVTC*
back to top

mRNA from alignment at P-fluviatile_contig23:1463231..1465094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig23.5178.1 ID=mRNA_P-fluviatile_contig23.5178.1|Name=mRNA_P-fluviatile_contig23.5178.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1864bp|location=Sequence derived from alignment at P-fluviatile_contig23:1463231..1465094+ (Porterinema fluviatile SAG_2381)
CCCGTAAGGACCTGGCGGAACGCGTCGAGGCTCTTAAAGTTGCCGCGAAG
GAGACCAAGAGAACGTGCAGGCGGTTGGAACAGGTGATTGTGGGTGGGTA
GCTTCGAGGGgcGCGGAGATGTTGGTTCAACGTTAATTGAGGCTCGAGCT
GTCACACAGTGTAGGTCAACCCTCTCGTTCAGACGTGCACGTTGATACCT
CTTGCTCCGCGCGTGTGGCTGTCTGGATGTGTATTTAGGCCTCTGATGTT
GCGAATGGCGGTTTTGCGGGAGAGGGGGAGGGGGAAGACGAGGACGACGG
TTCTGGCGGCAACGCAGCCTTCAAAGCCGCGCAGGATGCGAGAATCGAGG
CAATCCAAGCCTGGAAGGCTTACAAACATGCTCAGCGAGCCCTCATGAAG
GTGGGTACAGAGCGAACGTTTTGTGTGCGGTGAAGGGCCCAACGGTGGGG
TCTCGAATTTCTTGGTACATACCGTCTTCAGCGGACTTGTTGATTATTTG
CTGATACTCTGGAGGAACCGTCACTATTAATATTCGTGTTTACAGTGCCA
GTCGTGTCGACGATGATTCATACCCTTTGTCGTAATACTCGCGCACGTGC
CGCAGGCGTACGGACAAGCCGCCGGCGATATAGACATCGAAGGCGCCAGT
GACGAAGAAAGCGACTGCGACTCAGAGGGTTGGGAGGGTTGGGAGAGTGG
AGGGGATGATTCGACCGACGAAGAAGGTTGGTGATGGAAATTGAGCTGCG
AGAATCCCCAAACACCCAGGGAGTGTACGTGTTTCGAAAGGGGTTGCCGT
CGCCGTCGACGAAAACTTGGCTTAAGCTCATACTAGTACCGCAGGCGCAG
CACATGCTCTTGGTTGCAGCGACAACCCATGTGTGTGCATTGTTTTTCCT
GTCAGAGAAACAAGACGGAACGCCGGTTACACTCGAGAGGGGTTTTATGT
TCGACATCAAAGAAGACGTCGACGACACGTGGGAGGCGGTGTTGCACAGG
GTCGACGCACAGCTTCGCCGCCAAGGATTCACGGGGAAAAGGGTCCCTGT
TTGGGGAGCTAAGGTGCGCCCCAACCGTCGACGTCGTTGTTGTCTTCGTT
TCAATTCGCCGCGACGATAGCGGGCCCTCTGAAACCAGGACGTTCCTACC
TGCCACACCGACGTTCCTCGCATCTCGGAATGAAACGCACGAGCAGATCG
GACAAGGATCCGGCCGAGCGAGCCGAGTGGAGATCAAGTGTGCCGCTTGG
GGACTGCCAGAGCGTCGAAAAAAACGGCAAAGAAGAGGACTTGGTCTTCT
TAGGCAAGGGTTCAAATAACTGTTCTACTTACCGCTGCCCGATATGGATG
GTTGAAATTGCAACTCCGAGTATGTGCCCTGGACTTGCAAGAACGAAGAA
GATATTGAGCTGTAAAGGGCAAGAGGGGGGTGAGAATGGCACAGTGTGAG
TAATATGGGGAGGAAAGAGATAACGTGAAGGCGGAGGTGAGGTAAAGAGG
ATGTGACACTAACACAAGAGCTAAAAAAACGAGCGCCACACTAAGCAATG
ATGGTGGCCCAAAGGAGCACAGAAGGAGAGGGGATAGCATGTGTAGGACT
CTTTCTAGAAACGTAAAGAGCGACTCAAACGTTGCTGATGGCTCTAGCAG
GGGTAGGGACGGTGCTTCGCTCGAAAGGGAGGATGCGTGTTCAATGGTCT
AATGACGAGGGCTGAGCAACCGCAGTTGATCCCCCCCGACCGTTTTCCTG
TCTTGCCGACATGTTCGTGTTTCGTGTTTCGACTCCCAGTGCAAGTGCGA
CTTTGGCGTCGCCGTCTCCTGGAACAGCACCACACCCCCAACAATTCAAA
AGGTGACATGTTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig23:1463231..1465094+

>mRNA_P-fluviatile_contig23.5178.1 ID=mRNA_P-fluviatile_contig23.5178.1|Name=mRNA_P-fluviatile_contig23.5178.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=810bp|location=Sequence derived from alignment at P-fluviatile_contig23:1463231..1465094+ (Porterinema fluviatile SAG_2381)
ATGGAAATTGAGCTGCGAGAATCCCCAAACACCCAGGGAGTGTACGTGTT
TCGAAAGGGGTTGCCGTCGCCGTCGACGAAAACTTGGCTTAAGCTCATAC
TAGTACCGCAGGCGCAGCACATGCTCTTGGTTGCAGCGACAACCCATGTG
TGTGCATTGTTTTTCCTGTCAGAGAAACAAGACGGAACGCCGGTTACACT
CGAGAGGGGTTTTATGTTCGACATCAAAGAAGACGTCGACGACACGTGGG
AGGCGGTGTTGCACAGGGTCGACGCACAGCTTCGCCGCCAAGGATTCACG
GGGAAAAGGGTCCCTGTTTGGGGAGCTAAGATGGAAATTGAGCTGCGAGA
ATCCCCAAACACCCAGGGAGTGTACGTGTTTCGAAAGGGGTTGCCGTCGC
CGTCGACGAAAACTTGGCTTAAGCTCATACTAGTACCGCAGGCGCAGCAC
ATGCTCTTGGTTGCAGCGACAACCCATGTGTGTGCATTGTTTTTCCTGTC
AGAGAAACAAGACGGAACGCCGGTTACACTCGAGAGGGGTTTTATGTTCG
ACATCAAAGAAGACGTCGACGACACGTGGGAGGCGGTGTTGCACAGGGTC
GACGCACAGCTTCGCCGCCAAGGATTCACGGGGAAAAGGGTCCCTGTTTG
GGGAGCTAAGTGCAAGTGCGACTTTGGCGTCGCCGTCTCCTGGAACAGCA
CCACACCCCCAACAATTCAAAAGGTGACATGTTGATGCAAGTGCGACTTT
GGCGTCGCCGTCTCCTGGAACAGCACCACACCCCCAACAATTCAAAAGGT
GACATGTTGA
back to top