mRNA_P-fluviatile_contig23.5177.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig23.5177.1
Unique NamemRNA_P-fluviatile_contig23.5177.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig23.5177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig23contigP-fluviatile_contig23:1446981..1451391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size224
Cds size177
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig23.5177.1prot_P-fluviatile_contig23.5177.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig23 1447028..1451391 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815992.3995543-UTR-P-fluviatile_contig23:1446980..14470271622815992.3995543-UTR-P-fluviatile_contig23:1446980..1447027Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1446981..1447027 -
1693563964.3306227-UTR-P-fluviatile_contig23:1446980..14470271693563964.3306227-UTR-P-fluviatile_contig23:1446980..1447027Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 1446981..1447027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815992.4158103-CDS-P-fluviatile_contig23:1447027..14471221622815992.4158103-CDS-P-fluviatile_contig23:1447027..1447122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1447028..1447122 -
1693563964.3408966-CDS-P-fluviatile_contig23:1447027..14471221693563964.3408966-CDS-P-fluviatile_contig23:1447027..1447122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1447028..1447122 -
1622815992.428426-CDS-P-fluviatile_contig23:1451309..14513911622815992.428426-CDS-P-fluviatile_contig23:1451309..1451391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1451310..1451391 -
1693563964.3495185-CDS-P-fluviatile_contig23:1451309..14513911693563964.3495185-CDS-P-fluviatile_contig23:1451309..1451391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1451310..1451391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig23.5177.1

>prot_P-fluviatile_contig23.5177.1 ID=prot_P-fluviatile_contig23.5177.1|Name=mRNA_P-fluviatile_contig23.5177.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=59bp
CLVCGTFVHSVVSVGYDTGRKHANCRPNTLFSPSVPNRCQQSLTRPLRRR
PRPPKNPS*
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mRNA from alignment at P-fluviatile_contig23:1446981..1451391-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig23.5177.1 ID=mRNA_P-fluviatile_contig23.5177.1|Name=mRNA_P-fluviatile_contig23.5177.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4411bp|location=Sequence derived from alignment at P-fluviatile_contig23:1446981..1451391- (Porterinema fluviatile SAG_2381)
TGCTTGGTCTGCGGGACCTTTGTCCACAGTGTGGTATCCGTCGGCTACGA
CACCGGGCGCAAGCACGCTAACTGCAGGCCCAGTAAGTCTACCTCTTTCG
TTGACGCGCGCGTAATTTTCGGTCGGTCCTGTTCCCGCATGTAAACCGCT
GCTGTTTTCATTTTGTTTATGAACAGCTGTAGCGTTCTCTCTTTTTTCTG
CCTACTACTTCGGAAGTAATGTTTCCTTGCCAAGACATGTACAAGTGCAC
AGCGACGCTTTATTCGCGTTTCTCCTCTGCCTATTTCCTTTCCCCACCAC
GAAATCTACAAGTGCACAGCAACGCCCACGCGACATTTTTCCTTCCACAT
GTGTGTTATTGCCAGTTTACGGCGCGGCGGGATCTCTCTGTCTCTCTCTC
TCTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCAATCTTTCAAAATTTA
CTTGATCTACACCTCCTTACACCTTCCCGGCGGCTTTTCCAGCCTACACA
CCATCAACAGACCCGCCGGACTCAAGTCAATGAAGACAATAGCAAAAGAT
ACCCACGCGTCCGTTTTGTGTAGTACAGGTTCCTTTATCGACACCGTTCT
CTTTGTGTCGATCACTTTCTCCCTTGCTCTCTCTCCCTCTCTCCTCTCTC
CCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTGTCTCTTGCTCTCAATCTCAATCTCTCAAAG
TTATACCGGTACTTGATCTACACCCGGCCTTCACTTCTTTACACCTACCC
GGCGGATTTTCCACATCTCAAATCTCCCTTCAACACGCCGCAAAATACAC
GGCGGCTTTTCCAGCCTACGCACCATCGACAGACCCGCCGGACTCAAGTC
AACGAAGCCAATAGCAAAAAGATACCCACGGGTCCTTTTTGTGTAGTACA
GATTCCTTTGTCGACACCGTTGCGTTTTTAAACGCTATGGGATCCACCGC
TCCATCTTTCTGAATGCTGTGGGATCCATGATATTATGACCTCGTGCCCA
GACAGCTATATCCGCGACACTCTTCTCGCAAAACGTGTGTTTCCGTATCG
CCAGTTTATCACGACGTGCACGCGAGGCACGAGAACTGCCTGTTGAAGAG
GTTTGCGAAGCCAGGCGGCGGAGGATAGTCTGGGCCAACTCCACCCCTTC
ACAGCAGTATGTCGCACGTGCCGGTTTCCTTTTCAGAACATCTGTCTGTT
TCTGGGTGTACACAGGATCATCACCGTATGAACTCTGAGGTCGACATGAC
ACATGACATGCATTGTTTGTGCCGATTTCTATTTCCGACGTGCGTACAGA
GAACGGCCATAGGGACTTTGAGGCGGACTACATGTATTTTATGTGCCGAC
TTCTTTGTTGAGAAGGTCGCTTCCACCCCCTTCGATGTCCGTCCTACATT
AATTCGGAAACGGGCGTACACAGGATTATCACCGTATGAACTCTGAGGTC
GACATGACACATGACATACATTGTTTGTGCCGACTTTTTTTTTTCGAAAG
CAGAAATATTTCGTGCGTACAGCGAACGGCCAACTCCACCCCTTCACAGC
AGTATGTCGCACGTGCCGGTTTCCTTTTTCAGAACATCTGTCTGTTTCTG
GGTGTACACAGGATCATCACCGTATGAACTCTGAGGTCGACATGACACAT
GACATGCATTGTTTGTGCCGATTTCTATTTCCGACGTGCGTACAGAGAAC
GGCCATAGGGACTTTGAGGTGGACTACATGTATTTTTGGTGCCGACTTCT
TTGTTGAGAAGGTCGCTTCCACTCCTTCGATGTCCGTCCTACATTAATTC
AGAAACCCTGCACCGTCTACGTATCGGTTTCGCTTTCTCTGTCGTTCTCT
CGCTCTATCGCTCTGTCGCTGTGTCGCTGCCTCCCTCTCTTTCTCTCTCT
CCCTCTCTCTGCATGCTGCACGTTCTGTAAGCGTTTCTAACTACGCGCGC
TTTCAATACACCGCCGCGCATCACCTACTTGGTCTTCGTCATGGTTGTCG
GACGTCCCTCGCTCTCGCTTTCGCGCCCACTCTGTCGCTGTGTCGCTACC
CCTCTCTCTGTGCATGCTGCGAGCGTTGTGAGCGCTTCTAACTACGCGAG
CGTTCAACACGCTGCCGCGCATCACGTACTTGGTCTTCGTCATGGTTGTC
GGACCTCCCTCTCTCTCGCTCTCCCTGTGTCGCTGTGTCGCTGTGACGCT
GGCTCTCTCTCGCTCTGCATGCTGCACGCTTTGTGAGCGTTTCTAAGTAC
GCGCGATTTCAACACGCTGCCGCGCATCACGTACTTGGTCTTCGTCATGG
TTGTCGGACGTCCCTCGCTCTCGCTTTCGCGCCCACTCTGTCGCTGTGTC
GCTGCCCTCTCTCTCTGTGCATGCTGCGAGCGTTGTGAGCGCTTCTAACT
ACGCGAGCGTTCAACACGCTGCCGCGCATCACGTACTTGGTCTTCGTCAT
GGTTGTCGGACCTCCTCTCTCTCGCTCTCCCTGTGTCGCTGTGTCGCTGT
GACGCTGGCTCTCTCTCGCTCTGCATGCTGCACGCTTTGTGAGCGTTTCT
AAGTACGCGCGCTTTCAACACGCTGCCGCGCATCACGTACTTGGTCTTCG
TCATGGTTGTCGGACCTCCTCTCTCTCTCTCTCGCTGTGTCGCTGTGTCG
CTGGCTCTCTCTCTCTCTGCATGCTGCACGCTTTGTGAGCGCTTCTAACT
ACGCGCGCTTTCAACACACCGCATCACGTTATTCGTCTTCGTCGTGTCGT
CGGGTCGCTCTCTCTCTCTCTCTGTCGCTCTCTCGCTGGGTCGCTGCCTC
CCTCTCTCTCTGCATGCTGAACGCTTTGTGGGCACTTTTAAGTACGCGCG
CTTTCAATGTGGCGGAAACGTTTTCTTATCCATAGCAACAATGCCCGTTT
TGTTTTTGGTGGGCCGCGAGAGTTTTAATGACCTGTACATCTTTTGTCGG
CATCGTTACTGGCTGACATTCTTCTGGGCCAACCCTGATACAGGGTGTCC
ATGCCACTTTCCTCTTTTGTTTTGCTCTGCGTTTTTTTTTCCTGTATCCG
CGTCTTGCATTTATGCCCTTTCGTTGTATATCTCCTTTCGTCCGCAAACC
TTCGGGTTACCGCGGAGCCGCTGCCCCCCTTCAGGGGCGAGGCGTAGCCC
CTGTACAACTATCTAATTTTATCTTTTGCCGCTTCGTTGGGTTCTCGCCT
CTCAGCGCTCCTCAGGTTCCCGCTGGCGCCTCAGCGTTTTGACGCCGCCG
CGCGCTCGCCCTCGCGTTTTGCCTCGAAAAAAACACGCGGACCGCGACCT
TTGCTCGCCCCCGTCCCTTTCCGGCCGCTCTCGCCCTCGCGCTCGCGCCC
TGCGCCCGCGCCGCCCTCCTCAGGACGCGAAAACACACACGCAATGGGTT
CCGCGCTTCGCGCGACGCGCGCGCAGGGTTCCGCGCTTCTGACTTCGTCG
CGCCGGGCTGTTTGAGCCTTAGCCGCGCGCGCCCGGACGAACCCGTTAAG
AATTGCTCTTATCATTGGCCGCTCGCTCGAAAAGCCTTTCTCTTCCTCTG
TCTCTCTCTCGCTCACGCACACACACACTCTCTCTCTCTCTCTCTCACGC
ACACACGCACTCTCTTTCTCTCTTTCTCTCTAACACACGCACTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCACACACATTTGATCTCTC
TCTTTTCTCTTCCTCTGTCTCTCTCTTTCTTTGTCTCTCTCTCTCTCGCT
CACACACACACACACACACGCACTCTCTCTGGCGTTGACACACACCAGAT
TTTTGTCTCTCTCTCTCTCTCGCACACACACACACACACACACGCTCTCT
GTCTCTCTCTCTCACACACACACTCTCTCTCTCTCTTTCTCTCTAACACA
CACACACTCTCTCTCTCTCTCTCTTTCTCTCTCGCACACACACATTTGAT
CTCTCTCTCTTTCTCTTCCTCTGTCTCTCTCTTTCTTTGTCTCTCTCTCT
CTCGCTCACACACACACACACACTTTCGCACTCTCTCTCTCTCTCTCTCT
CTCACACACACACATTTGACCGCCTTTTAGGAAGAGGCGTTGACACACAC
CGGATTTTACACTTCAAAGAGCACGAGCGGCGGGGAATCTCCCTTCAACA
CGCCGCCAGAGGCCATCGAATCTTCTTCTCACCCCCTCTCTCTCTGTCTT
TCCCACTTACTTCGATCAGACACACTTTTTTCTCCCTCGGTCCCCAACCG
ATGTCAACAATCTTTGACACGTCCCCTGCGAAGAAGGCCAAGACCACCGA
AGAATCCAAGTTAGTGGGTTTGGAAACGGACATTGACTGCCCCGACCTCC
ACTGCAGCAAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig23:1446981..1451391-

>mRNA_P-fluviatile_contig23.5177.1 ID=mRNA_P-fluviatile_contig23.5177.1|Name=mRNA_P-fluviatile_contig23.5177.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=354bp|location=Sequence derived from alignment at P-fluviatile_contig23:1446981..1451391- (Porterinema fluviatile SAG_2381)
TGCTTGGTCTGCGGGACCTTTGTCCACAGTGTGGTATCCGTCGGCTACGA
CACCGGGCGCAAGCACGCTAACTGCAGGCCCATGCTTGGTCTGCGGGACC
TTTGTCCACAGTGTGGTATCCGTCGGCTACGACACCGGGCGCAAGCACGC
TAACTGCAGGCCCAACACACTTTTTTCTCCCTCGGTCCCCAACCGATGTC
AACAATCTTTGACACGTCCCCTGCGAAGAAGGCCAAGACCACCGAAGAAT
CCAAGTTAGACACACTTTTTTCTCCCTCGGTCCCCAACCGATGTCAACAA
TCTTTGACACGTCCCCTGCGAAGAAGGCCAAGACCACCGAAGAATCCAAG
TTAG
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