mRNA_P-fluviatile_contig23.5170.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig23.5170.1
Unique NamemRNA_P-fluviatile_contig23.5170.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 2.580e-87
Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 1
Query:    4 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER 432
            VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSK IAIETARLATPPITPGVAFRDK VEEFFQPVKQELLA GASQYCQKEIRAQVDG ESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER
Sbjct:  146 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLATPPITPGVAFRDKLVEEFFQPVKQELLACGASQYCQKEIRAQVDGLESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER 288          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.970e-82
Identity = 135/143 (94.41%), Postives = 135/143 (94.41%), Query Frame = 1
Query:    4 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER 432
            VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSK IAIETARL TPPITPGVAFRDKHVEEFFQPVKQELLA GASQYCQK     VDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER
Sbjct:  303 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLETPPITPGVAFRDKHVEEFFQPVKQELLACGASQYCQK-----VDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER 440          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 1.270e-80
Identity = 134/143 (93.71%), Postives = 135/143 (94.41%), Query Frame = 1
Query:    4 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER 432
            VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQH+SK IAIETARLATP ITPGVAFRDKHVEEFFQPVKQELLA GASQYCQK     VDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER
Sbjct:  389 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHVSKMIAIETARLATPLITPGVAFRDKHVEEFFQPVKQELLACGASQYCQK-----VDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER 526          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.730e-61
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 1
Query:    4 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLE 429
            VATQRTEGLFGVAK SGVEKKLSLCALWDRLQ LSK IAIETARLATPP+  GVAF D HVE FF+PVKQELLA GASQYCQ     QVD ++SYD ELV+SG V+E+G PLP H++D  +IR+LRLKLN+LQVAPPDTDLE
Sbjct:  774 VATQRTEGLFGVAKSSGVEKKLSLCALWDRLQRLSKMIAIETARLATPPLGAGVAFGDIHVENFFRPVKQELLACGASQYCQ-----QVDEAQSYDAELVSSGRVEENGDPLPFHENDLAKIRSLRLKLNVLQVAPPDTDLE 910          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.670e-38
Identity = 72/144 (50.00%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    4 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQ-IRNLRLKLNILQVAPPDTDLER 432
            VATQRTEG+FGVAKRSGV KKLSLC LW++LQ + +++ +E +R+AT  +   + F+ KH++  F P+++EL   GASQYCQ E RA+V GS+SYDVE++ +G  D+DG+P PL +    + +  +R  L++ + A PDTDLE+
Sbjct:  153 VATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQVEARAEVGGSQSYDVEVICAGATDDDGRPDPLGEGVLRRKLEAVRFDLSLFEEAKPDTDLEK 296          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5KTX9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.000e-32
Identity = 72/161 (44.72%), Postives = 97/161 (60.25%), Query Frame = 1
Query:    7 ATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSK-----RIAIETA-------------RLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQ-IRNLRLKLNILQVAPPDTDLER 432
            ATQRTEGLFG+AKR+GVEK LSLCALW++LQ ++K      +AI                +L TP I     F+  H+++FF PV  EL   GAS++CQ+++R ++ GS+SYDVE++ SG    D  PLPL DD   Q +   +   N  Q APP  DLE+
Sbjct:    7 ATQRTEGLFGIAKRAGVEKNLSLCALWEKLQSVNKSLELTHVAISEGHDVSTTTLLRCRMKLGTPAIAAVRPFQVAHLDKFFGPVIVELERVGASEFCQRDVRDELGGSQSYDVEIIASGAAGNDSSPLPLGDDRLRQAVHGAQQNRNAFQEAPPLIDLEQ 167          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5JIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.950e-32
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    4 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQY 243
            VATQRTEGLF VAKRSGVE KLSLCALWDRLQ LSK IAIETAR ATPP+  GVAFRD HVE FF+ VKQEL A GASQ+
Sbjct:  333 VATQRTEGLFEVAKRSGVENKLSLCALWDRLQRLSKMIAIETARFATPPLGAGVAFRDIHVENFFRRVKQELPARGASQF 412          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.880e-30
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    7 ATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLE 429
            ATQR EGLF VAKR GV K+LSLCALWD L+ +   +AIE   LATP I   + F++KH+E FF P+K+ L   GASQ+C +++R ++ GS+SYDVE +      +D  P+ +      +I +LR +LN+LQ  PP TDL+
Sbjct:   39 ATQRVEGLFSVAKRMGVIKQLSLCALWDVLRRVDTSLAIE---LATPAIAAQLPFQEKHMENFFTPIKEGLQRVGASQFCTRDVRRELGGSQSYDVERIVDRQPAQD--PVKVG-----RISDLRERLNLLQPPPPATDLD 169          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5KC96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC96_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.050e-29
Identity = 69/142 (48.59%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    7 ATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDFV-QIRNLRLKLNILQVAPPDTDLE 429
            ATQR EGLF V K  GV K+LSLCALWD L+ +   +AIE   LATP I   + F++KH+E FF P+ + L   GASQ+C +++R ++ GS+SYDVE +        G   P  D   V QI +LR +LN+LQ  PP TDLE
Sbjct:  168 ATQRVEGLFSVPKCMGVIKQLSLCALWDVLRRVDTSLAIE---LATPAIAAQLPFQEKHMENFFTPINEGLQRVGASQFCTRDVRRELGGSQSYDVERI--------GDRQPAQDPVKVGQIFDLRERLNLLQPPPPATDLE 298          
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.230e-25
Identity = 64/143 (44.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    4 VATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPPITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVELVTSGNVDEDGQPLPLHDDDF-VQIRNLRLKLNILQVAPPDTDLE 429
            VATQRTEG+FGVAK+SG+ K LSLCALWDRLQH+ + + IE  R+A+P +   +AF  KH+EE     K EL                  GS+S DVE+V     D +G P+PL       Q+       N+ + APPDTDLE
Sbjct:   61 VATQRTEGMFGVAKKSGIHKNLSLCALWDRLQHVYQTMDIEHGRVASPAVKLELAFPTKHLEE----AKDEL-----------------GGSQSCDVEVVCVRAADAEGHPVPLEGGVLRQQLEAAHFDFNVCEEAPPDTDLE 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig23.5170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JXC0_9PHAE2.580e-8797.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV0_9PHAE2.970e-8294.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWM8_9PHAE1.270e-8093.71MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBY4_9PHAE3.730e-6176.76SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JY17_9PHAE4.670e-3850.00SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5KTX9_9PHAE2.000e-3244.72SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIR6_9PHAE3.950e-3281.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Y9_9PHAE2.880e-3048.23SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KC96_9PHAE2.050e-2948.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYU5_9PHAE7.230e-2544.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig23contigP-fluviatile_contig23:1385274..1386078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size434
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig23.5170.1prot_P-fluviatile_contig23.5170.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig23 1385274..1386078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816008.9054525-CDS-P-fluviatile_contig23:1385273..13854071622816008.9054525-CDS-P-fluviatile_contig23:1385273..1385407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1385274..1385407 +
1693564036.7892203-CDS-P-fluviatile_contig23:1385273..13854071693564036.7892203-CDS-P-fluviatile_contig23:1385273..1385407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1385274..1385407 +
1622816008.9186485-CDS-P-fluviatile_contig23:1385587..13857051622816008.9186485-CDS-P-fluviatile_contig23:1385587..1385705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1385588..1385705 +
1693564036.8015337-CDS-P-fluviatile_contig23:1385587..13857051693564036.8015337-CDS-P-fluviatile_contig23:1385587..1385705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1385588..1385705 +
1622816008.9335418-CDS-P-fluviatile_contig23:1385898..13860781622816008.9335418-CDS-P-fluviatile_contig23:1385898..1386078Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1385899..1386078 +
1693564036.8098242-CDS-P-fluviatile_contig23:1385898..13860781693564036.8098242-CDS-P-fluviatile_contig23:1385898..1386078Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 1385899..1386078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig23.5170.1

>prot_P-fluviatile_contig23.5170.1 ID=prot_P-fluviatile_contig23.5170.1|Name=mRNA_P-fluviatile_contig23.5170.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=144bp
TVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKRIAIETARLATPP
ITPGVAFRDKHVEEFFQPVKQELLAGGASQYCQKEIRAQVDGSESYDVEL
VTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER
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mRNA from alignment at P-fluviatile_contig23:1385274..1386078+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig23.5170.1 ID=mRNA_P-fluviatile_contig23.5170.1|Name=mRNA_P-fluviatile_contig23.5170.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=805bp|location=Sequence derived from alignment at P-fluviatile_contig23:1385274..1386078+ (Porterinema fluviatile SAG_2381)
ACGGTTGCCACTCAGCGCACGGAAGGCTTATTCGGAGTGGCGAAGCGCTC GGGTGTCGAGAAGAAGCTTTCACTGTGCGCTCTTTGGGATCGCCTGCAAC ACCTGAGCAAGAGGATTGCCATCGAGACAGCGAGGTGCGAGGTGACTTTG TATGTTACCGATCCCTAGAGGCTTCGCGTGCGATGGGATCCCTAGTGGGT AAATCAACTAGACGCTCAAGGATAATGATGGTAGTTGACGTTATACATGA ACCTCTCCCGTCGCCACATATCATACACCTTATTTCATGCAGCACTCCGA TGCAATGCATGCAGGTTAGCAACCCCCCCAATCACCCCTGGGGTGGCGTT CCGGGACAAGCACGTCGAGGAATTCTTCCAGCCCGTGAAGCAAGAGCTTT TGGCTGGTGGTGCCAGCCAGTACTGCCAGAAAGTAAGGCGTGTTGGGGCA TGTATTTGTACATAAGACGCTGAATCGTTGCTCTTGATTTCGGACAATTG TGTGCCCGTGACTTCTCGAGCTTGACCACAAACAGACATCGTCAAAGCCC AATCTAAACCCAAATAAACGCCGGAATTGTACGCCTTTCCACCGACCATA CTCGTTCGACCTTTTTCTGTCGCAGGAGATCAGAGCTCAGGTCGACGGAT CGGAGTCGTATGACGTCGAACTTGTGACTTCCGGAAATGTGGACGAAGAC GGACAACCGCTTCCTCTACACGACGACGACTTTGTCCAGATACGCAATTT GCGCCTCAAGCTCAACATTCTCCAGGTCGCACCACCTGATACCGATCTGG AGAGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig23:1385274..1386078+

>mRNA_P-fluviatile_contig23.5170.1 ID=mRNA_P-fluviatile_contig23.5170.1|Name=mRNA_P-fluviatile_contig23.5170.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig23:1385274..1386078+ (Porterinema fluviatile SAG_2381)
ACGGTTGCCACTCAGCGCACGGAAGGCTTATTCGGAGTGGCGAAGCGCTC
GGGTGTCGAGAAGAAGCTTTCACTGTGCGCTCTTTGGGATCGCCTGCAAC
ACCTGAGCAAGAGGATTGCCATCGAGACAGCGAGACGGTTGCCACTCAGC
GCACGGAAGGCTTATTCGGAGTGGCGAAGCGCTCGGGTGTCGAGAAGAAG
CTTTCACTGTGCGCTCTTTGGGATCGCCTGCAACACCTGAGCAAGAGGAT
TGCCATCGAGACAGCGAGGTTAGCAACCCCCCCAATCACCCCTGGGGTGG
CGTTCCGGGACAAGCACGTCGAGGAATTCTTCCAGCCCGTGAAGCAAGAG
CTTTTGGCTGGTGGTGCCAGCCAGTACTGCCAGAAAGTTAGCAACCCCCC
CAATCACCCCTGGGGTGGCGTTCCGGGACAAGCACGTCGAGGAATTCTTC
CAGCCCGTGAAGCAAGAGCTTTTGGCTGGTGGTGCCAGCCAGTACTGCCA
GAAAGAGATCAGAGCTCAGGTCGACGGATCGGAGTCGTATGACGTCGAAC
TTGTGACTTCCGGAAATGTGGACGAAGACGGACAACCGCTTCCTCTACAC
GACGACGACTTTGTCCAGATACGCAATTTGCGCCTCAAGCTCAACATTCT
CCAGGTCGCACCACCTGATACCGATCTGGAGAGAGAGATCAGAGCTCAGG
TCGACGGATCGGAGTCGTATGACGTCGAACTTGTGACTTCCGGAAATGTG
GACGAAGACGGACAACCGCTTCCTCTACACGACGACGACTTTGTCCAGAT
ACGCAATTTGCGCCTCAAGCTCAACATTCTCCAGGTCGCACCACCTGATA
CCGATCTGGAGAGA
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