mRNA_P-fluviatile_contig22.5002.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.5002.1
Unique NamemRNA_P-fluviatile_contig22.5002.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.5002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:2188637..2189489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size855
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815959.350803-UTR-P-fluviatile_contig22:2188636..21890541622815959.350803-UTR-P-fluviatile_contig22:2188636..2189054Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2188637..2189054 +
1693563853.5291207-UTR-P-fluviatile_contig22:2188636..21890541693563853.5291207-UTR-P-fluviatile_contig22:2188636..2189054Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2188637..2189054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815959.3606324-CDS-P-fluviatile_contig22:2189054..21894891622815959.3606324-CDS-P-fluviatile_contig22:2189054..2189489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2189055..2189489 +
1693563853.5386918-CDS-P-fluviatile_contig22:2189054..21894891693563853.5386918-CDS-P-fluviatile_contig22:2189054..2189489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2189055..2189489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.5002.1prot_P-fluviatile_contig22.5002.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 2189055..2189489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.5002.1

>prot_P-fluviatile_contig22.5002.1 ID=prot_P-fluviatile_contig22.5002.1|Name=mRNA_P-fluviatile_contig22.5002.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=145bp
MQVSAIQVNERSLREGKVETAVPASGKGNGSNKPILPSHARKSPLRFRSV
TSDLTRSPHSTSDTHMTSDPVMSLDSLVSDNGNAGEQSSAHTSGSSHRIV
RKQLDLPKDLAFPGTPGQDVVDIFDPVPRNRETQLSRQLPGSRIR
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mRNA from alignment at P-fluviatile_contig22:2188637..2189489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.5002.1 ID=mRNA_P-fluviatile_contig22.5002.1|Name=mRNA_P-fluviatile_contig22.5002.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=853bp|location=Sequence derived from alignment at P-fluviatile_contig22:2188637..2189489+ (Porterinema fluviatile SAG_2381)
GGCACAGGAAGCATCTGATGTGGAACGTCCGCAGGAGCAGGATCGCGCCG
AAGGCGGGGTGACCGTGAACGACCGTCGCGAGGTGGGAACGCCGAAAGGA
ACCCCCGCCCAGTAGACCCCAGCCCAACGCCCAGACCCCGCGCGCTTGAG
AGGGTGCGCGCGGGCGGCGGAAGCCGAGAAGAAGGGAGAGGAGGGCGATG
GCGACCCGAACGAAGGCACTCAGTTTGACGGCGAGGACGATAACGACAGC
GAAGAAGACCAGCGCGGTAACGTGCGGTTCTCCCTCACTGAAGACGTGGT
CCACAACCTGAAAGACTCGGCTGCAAATCGGGCAACCCCCGCTCCCCTCT
CCTGGTCGTTGCAACGCCGACTCTCATCGAGCTCCTGCAGTACCACGCAA
TGGCTACTAGACCTCTCCATGCAGGTCAGCGCTATTCAGGTGAACGAACG
CTCTTTGAGAGAGGGTAAGGTTGAGACAGCAGTTCCAGCCTCTGGCAAAG
GTAATGGCAGCAATAAACCGATTCTCCCGTCACACGCACGCAAATCACCT
CTGCGTTTTCGCAGCGTGACCTCCGATCTTACCCGATCTCCGCACAGCAC
ATCAGACACACACATGACCAGCGACCCAGTGATGTCTCTTGACTCGCTCG
TGTCGGACAACGGCAATGCTGGAGAGCAATCGTCGGCTCACACATCCGGC
AGCTCGCATAGGATTGTTCGAAAGCAATTGGACCTGCCCAAAGATTTAGC
TTTTCCAGGAACGCCTGGGCAAGACGTCGTCGATATATTCGACCCAGTAC
CGCGCAATCGTGAAACTCAACTCAGTAGACAACTGCCCGGAAGCCGCATT
CGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:2188637..2189489+

>mRNA_P-fluviatile_contig22.5002.1 ID=mRNA_P-fluviatile_contig22.5002.1|Name=mRNA_P-fluviatile_contig22.5002.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=870bp|location=Sequence derived from alignment at P-fluviatile_contig22:2188637..2189489+ (Porterinema fluviatile SAG_2381)
ATGCAGGTCAGCGCTATTCAGGTGAACGAACGCTCTTTGAGAGAGGGTAA
GGTTGAGACAGCAGTTCCAGCCTCTGGCAAAGGTAATGGCAGCAATAAAC
CGATTCTCCCGTCACACGCACGCAAATCACCTCTGCGTTTTCGCAGCGTG
ACCTCCGATCTTACCCGATCTCCGCACAGCACATCAGACACACACATGAC
CAGCGACCCAGTGATGTCTCTTGACTCGCTCGTGTCGGACAACGGCAATG
CTGGAGAGCAATCGTCGGCTCACACATCCGGCAGCTCGCATAGGATTGTT
CGAAAGCAATTGGACCTGCCCAAAGATTTAGCTTTTCCAGGAACGCCTGG
GCAAGACGTCGTCGATATATTCGACCCAGTACCGCGCAATCGTGAAACTC
AACTCAGTAGACAACTGCCCGGAAGCCGCATTCGAATGCAGGTCAGCGCT
ATTCAGGTGAACGAACGCTCTTTGAGAGAGGGTAAGGTTGAGACAGCAGT
TCCAGCCTCTGGCAAAGGTAATGGCAGCAATAAACCGATTCTCCCGTCAC
ACGCACGCAAATCACCTCTGCGTTTTCGCAGCGTGACCTCCGATCTTACC
CGATCTCCGCACAGCACATCAGACACACACATGACCAGCGACCCAGTGAT
GTCTCTTGACTCGCTCGTGTCGGACAACGGCAATGCTGGAGAGCAATCGT
CGGCTCACACATCCGGCAGCTCGCATAGGATTGTTCGAAAGCAATTGGAC
CTGCCCAAAGATTTAGCTTTTCCAGGAACGCCTGGGCAAGACGTCGTCGA
TATATTCGACCCAGTACCGCGCAATCGTGAAACTCAACTCAGTAGACAAC
TGCCCGGAAGCCGCATTCGA
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