mRNA_P-fluviatile_contig22.5000.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.5000.1
Unique NamemRNA_P-fluviatile_contig22.5000.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.5000.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.830e-73
Identity = 133/177 (75.14%), Postives = 148/177 (83.62%), Query Frame = 3 
Query: 1560 MVRSIA-AIVAFALLLN-STVDASKKKRKESIDFTVFERQSDDGPRHSPLFTLPVGGGEG-EFPSKMVLFNNDLYGSENDLINQVQDKIIGYNQGHCVETVASEGFIAECYFTYVFDNGSLTANGPFNFDASSGGVLPSVLAVTGGTGDYAATQGEAAVSAGPAENFPSLQFDFNLK 2081
            MVR I  A VAFALLL  +TV+AS+ K + S++FTVFERQSDDGPRHSPLFTLPV   E  E+PSKMVLFNNDLYGSE+DLI++VQD ++GYNQGHCVETVAS GFIAEC+FTYVFD+GSLTANGPFNFDA  G VLPS LAVTGGTG+Y    G   VSAGPAE FPSLQFDF LK
Sbjct:    1 MVRFIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAEDG-VLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLK 176
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BLAST of mRNA_P-fluviatile_contig22.5000.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 8.680e-48
Identity = 88/116 (75.86%), Postives = 98/116 (84.48%), Query Frame = 3 
Query: 1749 MVLFNNDLYGSENDLINQVQDKIIGYNQGHCVETVASEGFIAECYFTYVFDNGSLTANGPFNFDASSGGVLPSVLAVTGGTGDYAATQGEAAVSAGPAENFPSLQFDFNLKDMSRK 2096
            MVLFNNDLYGSE+ LI++ Q+++IGYNQGHCVETVAS GFIAEC+FTYVFD+GSLTANGPFNFD   G VLPS LAVTGGTG+Y   QG   VSAGPAE FPSLQFDF LK  SR+
Sbjct:    1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDG-VLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLKRKSRE 115
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BLAST of mRNA_P-fluviatile_contig22.5000.1 vs. uniprot
Match: A0A6N6VM22_9HYPH (Allene-oxide cyclase n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VM22_9HYPH)

HSP 1 Score: 57.4 bits (137), Expect = 8.020e-6
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 3 
Query: 1569 SIAAIVAFALLLNSTVDASKKKRKESIDFTVFERQSDDGPRHSPLFTLPVGGGEGEFPSKMVLFNNDLYGSENDLINQVQDKIIGYNQGHCVETVASEGFIAECYFTYVFDNGSLTANGPFNFDASSGGVLPSVLAVTGGTGDYAATQGEAAVSAGPAENFPSLQFDFNLKD 2084
            S+A + AF  +  S  + S K +       V E  + D        TL +G  +G+    ++ F N+++   N      ++K+ G + G+CV TVA + +  EC +T     G +T  GPF  DA       S+LA+TGG+G+YA  +G+  + A  A+      F +NL +
Sbjct:   14 SVAFVAAFLSIAPSHAEESDKTQ-----LVVVEHATTDA-------TLDLGA-KGDSNGDVLTFANEVFDKSN------KEKV-GTDNGYCVRTVAGKAW--ECIWTLSLAKGQITVEGPF-LDAGD-----SMLAITGGSGEYAHARGDMLLHARNAQG-SEYDFTYNLNE 156
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BLAST of mRNA_P-fluviatile_contig22.5000.1 vs. uniprot
Match: F1ZAY6_9SPHN (Allene-oxide cyclase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 TaxID=983920 RepID=F1ZAY6_9SPHN)

HSP 1 Score: 55.5 bits (132), Expect = 3.150e-5
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 3 
Query: 1719 GGGEGEFPSKMVLFNNDLYGSENDLINQVQDKIIGYNQGHCVETVASEGFIAECYFTYVFDNGSLTANGPFNFDASSGGVLPSVLAVTGGTGDYAATQGEAAV 2027
            GG   +    +  F N +Y    D  NQV+   +G++QG+CV  V   G   EC++T   + G ++ +GP    A S       LAVTGGTG YAA  GE  +
Sbjct:   44 GGSAADNVGDLATFTNPIY----DAANQVK---LGHDQGYCVRLVV--GKTMECHWTLFLEKGQISVDGPVYDGADS------TLAVTGGTGLYAAVHGEVKI 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.5000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE1.830e-7375.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI8.680e-4875.86Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
A0A6N6VM22_9HYPH8.020e-629.07Allene-oxide cyclase n=1 Tax=Parvibaculum sediment... [more]
F1ZAY6_9SPHN3.150e-535.92Allene-oxide cyclase n=1 Tax=Novosphingobium nitro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:2174128..2178669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionpotential Allene oxide cyclase, partial
Ec32 orthologEc-08_001230.1
Exons3
Model size3160
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.5000.1prot_P-fluviatile_contig22.5000.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 2175189..2177110 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815987.5374017-UTR-P-fluviatile_contig22:2174127..21751881622815987.5374017-UTR-P-fluviatile_contig22:2174127..2175188Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2174128..2175188 -
1693563948.4598713-UTR-P-fluviatile_contig22:2174127..21751881693563948.4598713-UTR-P-fluviatile_contig22:2174127..2175188Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2174128..2175188 -
1622815987.5789413-UTR-P-fluviatile_contig22:2177110..21786691622815987.5789413-UTR-P-fluviatile_contig22:2177110..2178669Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2177111..2178669 -
1693563948.508545-UTR-P-fluviatile_contig22:2177110..21786691693563948.508545-UTR-P-fluviatile_contig22:2177110..2178669Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2177111..2178669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815987.5486202-CDS-P-fluviatile_contig22:2175188..21752691622815987.5486202-CDS-P-fluviatile_contig22:2175188..2175269Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2175189..2175269 -
1693563948.4727209-CDS-P-fluviatile_contig22:2175188..21752691693563948.4727209-CDS-P-fluviatile_contig22:2175188..2175269Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2175189..2175269 -
1622815987.5589328-CDS-P-fluviatile_contig22:2176269..21764551622815987.5589328-CDS-P-fluviatile_contig22:2176269..2176455Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2176270..2176455 -
1693563948.4898424-CDS-P-fluviatile_contig22:2176269..21764551693563948.4898424-CDS-P-fluviatile_contig22:2176269..2176455Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2176270..2176455 -
1622815987.5690076-CDS-P-fluviatile_contig22:2176837..21771101622815987.5690076-CDS-P-fluviatile_contig22:2176837..2177110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2176838..2177110 -
1693563948.5005944-CDS-P-fluviatile_contig22:2176837..21771101693563948.5005944-CDS-P-fluviatile_contig22:2176837..2177110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2176838..2177110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.5000.1

>prot_P-fluviatile_contig22.5000.1 ID=prot_P-fluviatile_contig22.5000.1|Name=mRNA_P-fluviatile_contig22.5000.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=180bp
MVRSIAAIVAFALLLNSTVDASKKKRKESIDFTVFERQSDDGPRHSPLFT
LPVGGGEGEFPSKMVLFNNDLYGSENDLINQVQDKIIGYNQGHCVETVAS
EGFIAECYFTYVFDNGSLTANGPFNFDASSGGVLPSVLAVTGGTGDYAAT
QGEAAVSAGPAENFPSLQFDFNLKDMSRK*
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mRNA from alignment at P-fluviatile_contig22:2174128..2178669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.5000.1 ID=mRNA_P-fluviatile_contig22.5000.1|Name=mRNA_P-fluviatile_contig22.5000.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4542bp|location=Sequence derived from alignment at P-fluviatile_contig22:2174128..2178669- (Porterinema fluviatile SAG_2381)
TACACCTGCCGTGATTTACTGTCTGAAGCCCCCTCCTTTCCAACCTTTCT
TCTCCAACGGCATGCGTTGTGACATGAAGAAGTGCCATACGTCGAGCATG
ATTCCTGGTCGCATGAGGAACAGCCATACCGTCACATGACCTCGGGTATA
GTGAGCATGATATGAATCATAACGATCATAGTATCACTAGGAGACACCCA
AGGGCGAGTAGAGGTTTCGTGTACCTACCCTGCTTGCACCCGAGTCCGGT
AGGTACATGTACCACACCCGACCCGACCATCGGGTACGTCGGGTGCCACT
TTGCAAGGACTACAAAGCACGTATCCTGTTGAGTACCCTTTCATGGATTA
ACACGTAGTCAAACAATGATGACCGCCTGAACTGTCGTACTGAGCCGGCG
GCCACCCGCCGGAGGTACTTGCTCTACAAGTATGTTGAACGAGGATCGTA
GAAGAATTGTAGGTGTACGTCGCCCTACGAATTTCACCGGTAATCTATCC
TGGACCCGAAGACTACTCCGGCAAATGTTATCCTTTTCTAACTCGAACTC
GGAACGCTCCATTGGCAAGACTCTGTCGGAAGCACTGTAATGCAAGTTCA
CCCAAATCGTAGTCCATTTGGTTGGTTGTTTCTGTGGAGGGTCACGCTTA
CGAACATCCAGGGCTTGCTTGATAAGTGGATCCTCATTCCAAGTTAAAAG
CGAAATGAAACTTCGACCCTCACTCCATTTTTTCGGTCATTGGCCCTCTA
GGAGCGGGCGGGTATCAGCACAGCATGTCTTGGGGTTTCAATGCCTAGTG
TGAACGAGAATGCATGTTAATGTGAATATGTTGTTCTCCTGTCGATGGAC
AGATCTAGAAGTTTAGACCCATGGCGGCGTTTTGTTCGCGCTGAGATTGC
TCAAGCCGAGAGTGTTTGGTCCTGCGTTCGTACGCGGCAAACAGAGTCAA
AAATTGTCCAAAATGTCAAACGAGTATGATATATGGAGTATATGGTATTG
ATGAGTGCTCCGCTTGCTGTCTGTTCGTGTAAATAAAGTAGTGTTGCCAG
TGTGAAACGCGGCGTGTGGAAGCTTATGCAGTAAAAATGACAAAATTTTC
GTGCCACCCTCTTACTTCCATCATTGCACGACTAGTGATTGATATTGTGC
GTTGATATCGGGCATGGCTGGTCTATCTCCATAAAAATCAAATAACCGAG
GGTGACAGTGTGACACGTCGACGATGCGGGATTGGCATGTATACAAAGTG
TTCCCTCGAATGCACGATTAGCTCGAGAACAATGTTCGTGACGTCGCACT
TTCTTTCCAGGCCCGGCCCTACGCCTTCCCTCATGATGCACTTTACTGTA
CGCTTTGCATACAATCAAAGATGATACTTCTCATATATTCGACATCGTAA
CCTCTAATAGTTAGTACAAGTTCCCGTTTATTATTTTGACTGAACCCTCC
TTGCACAACTGTTTCCTCGTTGTTTGCCCCATCTTCGTCATCTCGATATA
GGTCGCGGTCTTAGCCAGCCACAGGGGGATTTCTACTCGTTGAACCCTCT
ACGCCAAGGATGGTGCGGTCCATTGCTGCCATTGTGGCATTTGCTCTCCT
TCTGAATTCGACGGTGGATGCCTCCAAGAAGAAACGCAAGGAAAGCATCG
ATTTTACTGTCTTCGAGAGGCAAAGCGATGACGGCCCTCGTCACAGTCCA
CTCTTTACTCTCCCCGTGGGAGGTGGAGAAGGAGAGTTTCCCTCCAAAAT
GGTGCTCTTCAACAACGATCTATACGGTTCTGAAAATGATCTGATCAATC
AGGTTCAAGACAAAATCATTGGGTACAACCAGGTGCGTCGATAACATCAA
GAGCTAAGAGTTGTGTACAGTTAGTACGGAAAAAATCCCAATGTGTTAGG
CAACTCTCCTGGAGCTGGGCGCATGATGGTCTCCAAGTATGCCAAATCCT
TCCGGACATTTAACCGTACCAGGTATAATCCATCACGAGGCGATAAGCGA
GCGTTGGCATGGAATACGCGATTGTTCGTTGCAAAAATGTACCTCGGAAG
ACTCATGCGCATGCCATGTATGCATTTACATGGAACTTGTTGGAGATCGA
ACGGTCAAATTAAACGAGTATGTGGTCAATCTGTTCAAGGGTGGAAGTTA
TGTCAACTCTCAAACAACGCCATCTGCTTGCCTCTTTGAACGCCGAGGAC
ATGTTTTATCTCAGGGTCACTGTGTCGAGACCGTGGCCTCCGAAGGTTTC
ATTGCCGAATGCTACTTCACGTACGTATTCGACAACGGCTCGCTTACGGC
GAACGGCCCGTTCAACTTCGATGCCAGTTCCGGGGGCGTTCTCCCCTCGG
TTCTGGCCGTCACTGGGGGCACCGGGGATTACGCTGCCACGCAGGGAGAA
GTGGGTACCCAGGCTTATGCCCACACCTTGATCGATCGTGTGTTATTTCA
GAAACGTCTGCTGAGCAATCTTATCGGTTTACACACAGAGGAGCATCCGT
TCTTCTGACTTGGACCCGCGGCTCAACCTCTTTCACCCTATTCAGAACCT
GATATCTTGCCTCCATCACCCTTTCGAAGTCACTCCTGTCGATGGCAATG
GCGATCACTTGCAGAAAATGCTCGCACGCAGTTTGCTTGGATGCTCCTGG
CGGATGCGCAAACCGGTTTCAGCTTTCAAATCCGGCAATCAACGTTCACT
GAAATATTTGTGCGTCGCAGTCCAACGCCTCGTGATTTCCGCCGTAGGCG
AAAGTCAGGTCGACAACCTACGCGTTATTTGACAATTTCTAATATCTGAC
CTTTTTTTTTTCTTTATTTCCAGATTTTCTTCAAAGAGCGCCTTGCCACC
CGGGGTATCTTGCCTGAACATCTGAACCGTGGTCGCACAGAAAGTTCCTC
TCCCTGAGCACCCAGCTCCCTTCCGCCAGCGGTGCTGACTGATAGTTTTT
TATCGCGATGAGAGTTTGATTGCATGACCCTCGGAAGAGTCTGTGCTGGG
TGCTCAAGGTATTACTTTTAGGTCGTCAGAACCTCTGGATATTTCGGAAC
GGCAAACATTTTGGAAACAAAAATCACCAGATATCTAGGGACTCTTAAAC
TCTGATCGTGACAATTTTACCCCGTATGTCAAAGCATCCATGCTCGATTT
GTGTGATAATTAAGACTAAGCCTAGCTTCTTCATGGCACCAGACAGGATG
TGAAGAGAGTATGCAGATCAGCAAGGTAACGCGGGCTACCAAACCCGTTT
CGCGAAACAAATCCTCAAGCGCGGCGGGAACAACGAGACATCATTTGGAT
TGACGACCTTATCCGATTGATCCATTCTTGCCTTGTGAGACCATGCATGC
ACACATACGTGGCAGTCTTTCATTTCTTCCAACCCGCTTCGTGCTGGCAG
GCTGCGGTGTCTGCCGGACCTGCTGAAAACTTCCCGTCCCTGCAGTTCGA
CTTCAATCTCAAGGACATGTCAAGGAAGTAGGCGGTCGTGGTAGTGGTGC
AGGCCCATCGTTTACTAGGTTGTTGTCTGAATCAACGGTGCAATGAACTT
GTTCATTATGAAAGGAATAGACTATACGTTGCACGAGGAGTCAAGCATAC
CGCGTACTCTTAAGTATGTCAGACAGGAAATTTCCCTTATGGCGAGTACG
GAAGCTTGGCTCCTTGAGCTCTATGGGCTCCGCTGGTACTCCGTAATAGT
TATGAAAGGACCAGGGTGAGGTGGCCGCCCGCCCCAAGTGCTGGATGGCC
ACCGGGCGGAAAAGAAGTGCAAGAGAATGAAGATTGGACCCATCATGTCC
TGATGAGTGGGCCAGATGAATGTTGCCCGCACAAATTGCTTGAATGGAAT
AATAGCCGTCAGCGACGCGGAAATACCCACATGTAGATTTAAGGCAATTA
CTTCGTAGTACTCCGGCGAATTATTTTACAGAAAGTACAGCAGCGGGTCA
CAGTGCAGATGTTAGCACAAGTACTTGGCGGTGAACCCGCGTTGAACTTT
ACAATTGCACACATCCACATAGTCTAACCGTAGTAGGTGTTGTTTAGGCG
ATATCACGTGACACGGTGGCATTGGCACGCCTCAGCACGGAGCGATCGAC
GCTTGCAGGCAGGTGACACTGTAGTGGTTAGTCTATAATAGTTGTGGAAC
ATGAAATATTTTGGTGTTGCTAACATCCACCGACCGACTTTCCTGGGAAG
GCCGTAGTGGGGTGCATTTGGGCTTGTCAAGCTTGCAAGAATTAAGCGTA
GAACTAATAGACTAGTCTAGTATTGTTAACTTTTCTCCATTCCTGCACAT
ACATCCAACCACATTTTTTTTCTTCGTTCTCACCTCAGATACAGCGGCCG
GGCCACGTGCCAACGTAAGATGAGTGATGAACAGAAGGCCCCCGCAGAAT
ACGATGTTCACCATCGACAAATAAAGTCAAAAAGTCTATAAAAAAAAACC
AAGCGTCCTCGGTTTGTCCTACTTCATTAATAGATGCGCATTGAAGCAGC
CCTACCACCTCCAACGTTATACAGACTTAGTCTATATGTCAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:2174128..2178669-

>mRNA_P-fluviatile_contig22.5000.1 ID=mRNA_P-fluviatile_contig22.5000.1|Name=mRNA_P-fluviatile_contig22.5000.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1080bp|location=Sequence derived from alignment at P-fluviatile_contig22:2174128..2178669- (Porterinema fluviatile SAG_2381)
ATGGTGCGGTCCATTGCTGCCATTGTGGCATTTGCTCTCCTTCTGAATTC
GACGGTGGATGCCTCCAAGAAGAAACGCAAGGAAAGCATCGATTTTACTG
TCTTCGAGAGGCAAAGCGATGACGGCCCTCGTCACAGTCCACTCTTTACT
CTCCCCGTGGGAGGTGGAGAAGGAGAGTTTCCCTCCAAAATGGTGCTCTT
CAACAACGATCTATACGGTTCTGAAAATGATCTGATCAATCAGGTTCAAG
ACAAAATCATTGGGTACAACCAGATGGTGCGGTCCATTGCTGCCATTGTG
GCATTTGCTCTCCTTCTGAATTCGACGGTGGATGCCTCCAAGAAGAAACG
CAAGGAAAGCATCGATTTTACTGTCTTCGAGAGGCAAAGCGATGACGGCC
CTCGTCACAGTCCACTCTTTACTCTCCCCGTGGGAGGTGGAGAAGGAGAG
TTTCCCTCCAAAATGGTGCTCTTCAACAACGATCTATACGGTTCTGAAAA
TGATCTGATCAATCAGGTTCAAGACAAAATCATTGGGTACAACCAGGGTC
ACTGTGTCGAGACCGTGGCCTCCGAAGGTTTCATTGCCGAATGCTACTTC
ACGTACGTATTCGACAACGGCTCGCTTACGGCGAACGGCCCGTTCAACTT
CGATGCCAGTTCCGGGGGCGTTCTCCCCTCGGTTCTGGCCGTCACTGGGG
GCACCGGGGATTACGCTGCCACGCAGGGAGAAGGTCACTGTGTCGAGACC
GTGGCCTCCGAAGGTTTCATTGCCGAATGCTACTTCACGTACGTATTCGA
CAACGGCTCGCTTACGGCGAACGGCCCGTTCAACTTCGATGCCAGTTCCG
GGGGCGTTCTCCCCTCGGTTCTGGCCGTCACTGGGGGCACCGGGGATTAC
GCTGCCACGCAGGGAGAAGCTGCGGTGTCTGCCGGACCTGCTGAAAACTT
CCCGTCCCTGCAGTTCGACTTCAATCTCAAGGACATGTCAAGGAAGTAGG
CTGCGGTGTCTGCCGGACCTGCTGAAAACTTCCCGTCCCTGCAGTTCGAC
TTCAATCTCAAGGACATGTCAAGGAAGTAG
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