mRNA_P-fluviatile_contig22.4998.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4998.1
Unique NamemRNA_P-fluviatile_contig22.4998.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:2152948..2155827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001070.1
Exons6
Model size1570
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4998.1prot_P-fluviatile_contig22.4998.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 2153303..2155293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815987.3613598-UTR-P-fluviatile_contig22:2152947..21533021622815987.3613598-UTR-P-fluviatile_contig22:2152947..2153302Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2152948..2153302 +
1693563948.3428664-UTR-P-fluviatile_contig22:2152947..21533021693563948.3428664-UTR-P-fluviatile_contig22:2152947..2153302Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2152948..2153302 +
1622815987.4392965-UTR-P-fluviatile_contig22:2155293..21558271622815987.4392965-UTR-P-fluviatile_contig22:2155293..2155827Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2155294..2155827 +
1693563948.4109561-UTR-P-fluviatile_contig22:2155293..21558271693563948.4109561-UTR-P-fluviatile_contig22:2155293..2155827Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2155294..2155827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815987.3753483-CDS-P-fluviatile_contig22:2153302..21533091622815987.3753483-CDS-P-fluviatile_contig22:2153302..2153309Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2153303..2153309 +
1693563948.350793-CDS-P-fluviatile_contig22:2153302..21533091693563948.350793-CDS-P-fluviatile_contig22:2153302..2153309Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2153303..2153309 +
1622815987.3843513-CDS-P-fluviatile_contig22:2153674..21537841622815987.3843513-CDS-P-fluviatile_contig22:2153674..2153784Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2153675..2153784 +
1693563948.3589952-CDS-P-fluviatile_contig22:2153674..21537841693563948.3589952-CDS-P-fluviatile_contig22:2153674..2153784Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2153675..2153784 +
1622815987.394476-CDS-P-fluviatile_contig22:2153941..21540091622815987.394476-CDS-P-fluviatile_contig22:2153941..2154009Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2153942..2154009 +
1693563948.3680584-CDS-P-fluviatile_contig22:2153941..21540091693563948.3680584-CDS-P-fluviatile_contig22:2153941..2154009Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2153942..2154009 +
1622815987.4093049-CDS-P-fluviatile_contig22:2154158..21543841622815987.4093049-CDS-P-fluviatile_contig22:2154158..2154384Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2154159..2154384 +
1693563948.3771474-CDS-P-fluviatile_contig22:2154158..21543841693563948.3771474-CDS-P-fluviatile_contig22:2154158..2154384Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2154159..2154384 +
1622815987.419761-CDS-P-fluviatile_contig22:2154897..21550111622815987.419761-CDS-P-fluviatile_contig22:2154897..2155011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2154898..2155011 +
1693563948.3912306-CDS-P-fluviatile_contig22:2154897..21550111693563948.3912306-CDS-P-fluviatile_contig22:2154897..2155011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2154898..2155011 +
1622815987.429386-CDS-P-fluviatile_contig22:2155137..21552931622815987.429386-CDS-P-fluviatile_contig22:2155137..2155293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2155138..2155293 +
1693563948.4031816-CDS-P-fluviatile_contig22:2155137..21552931693563948.4031816-CDS-P-fluviatile_contig22:2155137..2155293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2155138..2155293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4998.1

>prot_P-fluviatile_contig22.4998.1 ID=prot_P-fluviatile_contig22.4998.1|Name=mRNA_P-fluviatile_contig22.4998.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=227bp
MPDERLSTQQASCHSTTCGGMPALKSVSDFLDQLGAVVEVRQKLLHVWRR
VLLSTYRERGSSDGCMGLIVAIRRKTVTLCHACILPLAKSLEREISVAHQ
ALSVAGFPEERPTRRNFVSIMDLRNAILAWEEGYRGQGEFVICKMIKSIL
IDLVERDLRNEQWPDGDHERARASRELAEGVSEILSPFAFSLSKAGALSH
EAGEHGLNVLDGKTACFTFSIGAADA*
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mRNA from alignment at P-fluviatile_contig22:2152948..2155827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4998.1 ID=mRNA_P-fluviatile_contig22.4998.1|Name=mRNA_P-fluviatile_contig22.4998.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2880bp|location=Sequence derived from alignment at P-fluviatile_contig22:2152948..2155827+ (Porterinema fluviatile SAG_2381)
CCATCTAGTAATAAGTTATACACTCTTCCTAGTTCAAATCGGTATTCATT
CGATTCCGAGCGAACGAAACGCTTCTTTAGACCACTCATCTGCGTGACCT
TCGAAACATCGCAGGTGCCTGCCAAGTGGTGGACTTCGTAGTTTCTCCGA
TTCTCGAGTATTCCTGAACATCTTGTCTGGTTTTGGCTCACCTCGATTTT
TTTTCTACACTTGGATATTGAATAACTACAGGTTAGGGGGGGGGCAACTT
GAGGATGACAAGCTCGATGAAAAGTTGAATCAAGTCCGGATTGACCTAGT
CAAAGTGGAAGGAGGATTCGTCAGCGAACATGAGCACAACCAGGGCAATA
CCCGGATGCCAGGTATATCACGAGTGTGTCCTAATGGCACTCTCGGTGGG
TACCCTGTTCACGGCAGCTGGGCGGGCCGTTGGTGTCGCTTTCCAGAAAG
TTTAGAGCTTGAAATGATCTACACCAATTTCTTGTTTTCGTTTTGATGGC
CGAAATTCTTCTTCATTCTCAATTCGTTTGGATATCGCATGGGATGAACT
TGGATTTCTTTTCAGATGCACTCTTCACAAAAATCCACGAGGTGGATCCG
AAGCGATGATCACTGTTGTGCTTGGTATCGCGTTCTCTCTGTGGTAAAAG
TAACATGCGACAAGGTCATCTTGGTGTCGCAAAAACCGCCGCTCCTTGCA
CCACGTTGACTGCCTTTAAATGACCAGATGAGCGCCTGTCTACACAGCAA
GCATCATGCCATTCTACAACCTGCGGTGGCATGCCAGCGCTGAAGAGTGT
TTCAGATTTCTTGGACCAACTGGGAGCTGTGGTTGAGGTACGCCGCACAG
GAGAAGGGGACGGTGATTTAGAAATCGTATGCAGCCTGAGCGATCACGAC
ATGGTCCGGAACTAATCAGATGCTTCGATACAATGCTGGTCATGGAGCGG
TGTATGTCGTCCCGACTCTCATTCCCCGTTTCCCGCTCAAGCAGGTTCGT
CAAAAGCTGCTGCATGTTTGGAGACGTGTGTTGCTGTCCACGTATCGCGA
GAGGGGGTCAAGGTACGTGTAGAAATACGAGGGGCGGCGTCCAATGCGAC
GTTCCGTCAGAAATGAGCAAGACACCGAACTATTACACCGTTCCCCTCAC
GAAGACTGCTTTAATCCGACCGAGCTCGCCCGCTCCCCACGCTCTTATCA
ACATGGCACAGTGATGGTTGTATGGGACTGATTGTTGCTATACGCCGCAA
GACGGTCACACTTTGCCATGCTTGCATCCTACCCTTGGCCAAGTCACTGG
AACGCGAAATAAGTGTCGCACACCAGGCACTCAGTGTGGCCGGTTTCCCC
GAGGAGAGGCCCACGCGACGAAACTTCGTGTCCATCATGGACTTGCGCAA
TGCAATACTTGCATGGGAAGAGGGGTATCGAGGGCAGGTGTGCTGTTGAT
TGACTCCGTTCTGCTGAGATGCGCCTCGAGAAAAAAGACAAGCACCAGAC
AGAAGTAGGGTCGATACTTTTGCAATGTACGCGAGTGCGTGTCCCTGTGC
CGTTCTTCTATTATTGAATCATATATTCCTGCCTCGTGAAATCGCCTCGG
GTATCGTTCTTTGCCTTCGGTCTAGACCAGGTGGCACGAAATTCAGTTGC
AAAATGCCATAATTCATTTAGTCCTCGCCTTAAATGTGTCGTGCGTTTAA
GGCACAGAATGAGTTAGCAGAACAGTTTTTTTTTTTGATAACTTGATACG
CATAGTCGTGAATGCACATGATTTGCGCTTAAATGACACAAAATTGTAGC
AAATCTGCCCGAGGGCGATCCAATTGAGGGATGAGGGACTCGGCTTGAAG
GACTGCGTGGAAAATGGCTGTTTCGGTTGTGTAGGGATTTGAAATATCCG
ACACACGATTCCTTTGCTCTGCGCCATTTTTCCGATGGTATACTTCACAG
GGAGAGTTCGTGATCTGCAAAATGATCAAGTCAATTCTGATCGACCTCGT
CGAGAGAGATCTTCGGAACGAACAATGGCCTGATGGAGACCACGAGAGAG
CGCGAGCGTCTAGGGTGAGCCCCTGTTTGCCCAGAGCTATCGCAGCCGCT
ATGCTGTATTTTGCCAGGTGTAAACGTGCAGATTTATTCTGAAAGTCAGC
TTTCCTCTACTGCTTCTCTCCTCCTGTTGCTTTGTCGCAGGAACTGGCTG
AGGGAGTGAGTGAGATATTGTCTCCGTTCGCGTTTTCCCTCTCCAAAGCT
GGCGCGCTCTCGCATGAGGCGGGGGAACATGGTTTGAACGTTTTGGATGG
AAAAACCGCCTGTTTCACCTTCAGTATTGGAGCCGCGGATGCTTGATCGA
ATTGACACATTCCTAGGGATCGGAATTCCGGCCGACGTTTTGCCTGGCGG
GCCGGCAACCTGCCGCCTCTCATTTCCTGTTAGTTCAGCTCGGTAACCGT
GCAAGATTTGCCCTTTCTCCGATTCCAGGAAAGCCTTGCCCCGCTTTTGC
AACCTTTCGGGGCCATACCTCGCCGACTTATCTAGCGATAGCGATGACCT
CGTCGACCTCGATCATTTCAACTGCGGATCGCTGTCGTCACCGGCATGAT
GTCGGCAACCGAAGTGGCATACCTGGACATGTCCTCAAGGCCTGCACAAT
GTCAAAACAGCAAACGTGGTCGAGATGGGCGACCGCGCTGTGGCAACTAA
TGTCACGGAAGAAGTTGTAAGCAACCGCGCAATTGACAACACAGATCGTC
AGACAAAGCCAAGAAACATAGACCGACCTTAGTATACAAGTGAGGATGAG
GCGTGATATTCGACAGGCGCAGCAGTAACGAGAGCAACCTCGAGACAACT
ATCTGGGGCGCACGAGTGACCTCAAGAAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:2152948..2155827+

>mRNA_P-fluviatile_contig22.4998.1 ID=mRNA_P-fluviatile_contig22.4998.1|Name=mRNA_P-fluviatile_contig22.4998.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1362bp|location=Sequence derived from alignment at P-fluviatile_contig22:2152948..2155827+ (Porterinema fluviatile SAG_2381)
ATGCCAGATGCCAGATGAGCGCCTGTCTACACAGCAAGCATCATGCCATT
CTACAACCTGCGGTGGCATGCCAGCGCTGAAGAGTGTTTCAGATTTCTTG
GACCAACTGGGAGCTGTGGTTGAGATGAGCGCCTGTCTACACAGCAAGCA
TCATGCCATTCTACAACCTGCGGTGGCATGCCAGCGCTGAAGAGTGTTTC
AGATTTCTTGGACCAACTGGGAGCTGTGGTTGAGGTTCGTCAAAAGCTGC
TGCATGTTTGGAGACGTGTGTTGCTGTCCACGTATCGCGAGAGGGGGTCA
AGGTTCGTCAAAAGCTGCTGCATGTTTGGAGACGTGTGTTGCTGTCCACG
TATCGCGAGAGGGGGTCAAGTGATGGTTGTATGGGACTGATTGTTGCTAT
ACGCCGCAAGACGGTCACACTTTGCCATGCTTGCATCCTACCCTTGGCCA
AGTCACTGGAACGCGAAATAAGTGTCGCACACCAGGCACTCAGTGTGGCC
GGTTTCCCCGAGGAGAGGCCCACGCGACGAAACTTCGTGTCCATCATGGA
CTTGCGCAATGCAATACTTGCATGGGAAGAGGGGTATCGAGGGCAGTGAT
GGTTGTATGGGACTGATTGTTGCTATACGCCGCAAGACGGTCACACTTTG
CCATGCTTGCATCCTACCCTTGGCCAAGTCACTGGAACGCGAAATAAGTG
TCGCACACCAGGCACTCAGTGTGGCCGGTTTCCCCGAGGAGAGGCCCACG
CGACGAAACTTCGTGTCCATCATGGACTTGCGCAATGCAATACTTGCATG
GGAAGAGGGGTATCGAGGGCAGGGAGAGTTCGTGATCTGCAAAATGATCA
AGTCAATTCTGATCGACCTCGTCGAGAGAGATCTTCGGAACGAACAATGG
CCTGATGGAGACCACGAGAGAGCGCGAGCGTCTAGGGGAGAGTTCGTGAT
CTGCAAAATGATCAAGTCAATTCTGATCGACCTCGTCGAGAGAGATCTTC
GGAACGAACAATGGCCTGATGGAGACCACGAGAGAGCGCGAGCGTCTAGG
GAACTGGCTGAGGGAGTGAGTGAGATATTGTCTCCGTTCGCGTTTTCCCT
CTCCAAAGCTGGCGCGCTCTCGCATGAGGCGGGGGAACATGGTTTGAACG
TTTTGGATGGAAAAACCGCCTGTTTCACCTTCAGTATTGGAGCCGCGGAT
GCTTGAGAACTGGCTGAGGGAGTGAGTGAGATATTGTCTCCGTTCGCGTT
TTCCCTCTCCAAAGCTGGCGCGCTCTCGCATGAGGCGGGGGAACATGGTT
TGAACGTTTTGGATGGAAAAACCGCCTGTTTCACCTTCAGTATTGGAGCC
GCGGATGCTTGA
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