mRNA_P-fluviatile_contig22.4981.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4981.1
Unique NamemRNA_P-fluviatile_contig22.4981.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: A0A6H5JFL6_9PHAE (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.590e-52
Identity = 87/111 (78.38%), Postives = 92/111 (82.88%), Query Frame = 3 
Query:   42 RAAERGMVLFNVAAGQQLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVCDQDDVVIAVYPSYPAFKVSQDSTGIPPIHVRIEGSPLFCPCPGDRGGTRA 374
            RA E GMVLFNVAAG +LHVRRK+DGDRFQP WRDRP KLKDFLRGQGVPLHRRD+VAL+CD  D VIAVYPSYP F V QDSTG  PI VRI G+PLFCP P DRGG  A
Sbjct:  293 RATEAGMVLFNVAAGARLHVRRKKDGDRFQPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDSVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRPEDRGGAPA 403
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: D7FGW8_ECTSI (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW8_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 5.510e-51
Identity = 86/111 (77.48%), Postives = 92/111 (82.88%), Query Frame = 3 
Query:   42 RAAERGMVLFNVAAGQQLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVCDQDDVVIAVYPSYPAFKVSQDSTGIPPIHVRIEGSPLFCPCPGDRGGTRA 374
            RA E GMVLFNVAAG +LHVRRK+DGDRF+P WRDRP KLKDFLRGQGVPLHRRD+VAL+CD  D VIAVYPSYP F V QDSTG  PI VRI G+PLFCP P DRGG  A
Sbjct:  431 RATEAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDAVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRPEDRGGAPA 541
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: A0A835Z1B5_9STRA (tRNA(Ile)-lysidine synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.880e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:   60 MVLFNVAAGQQLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALV 221
            MVL+NV  G  L VRR+RDGDRF+P WR  P K+KDFLRGQGVPLHRRDDVALV
Sbjct:  596 MVLYNVPPGAVLRVRRRRDGDRFRPRWRATPAKVKDFLRGQGVPLHRRDDVALV 649
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: A0A7S1J5B6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J5B6_9EUGL)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-13
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 3 
Query:   12 GGGGGGGVDCRAAERGMVLFNVAAGQQLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVC 224
            G G G G   +A+   MV++NV  G  L VR +R GDRF P WR    KLKDFLRGQGVPLH RD V ++C
Sbjct:   32 GAGAGQGSPEQASPGPMVIYNVPFGAALEVRYRRPGDRFHPPWRPSAVKLKDFLRGQGVPLHERDRVPVLC 102
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: A0A8J5XS81_DIALT (tRNA(Ile)-lysidine synthetase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XS81_DIALT)

HSP 1 Score: 81.6 bits (200), Expect = 1.750e-13
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 3 
Query:   60 MVLFNVAAGQQLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVCDQDD---------------------VVIAVYPSYPAFKVSQDSTGIPPIHVRIEGS 329
            + L+NV  G +L VR +R+GD F P WR+RP KLKDFLRGQ VPLH R+DV L+   ++                      V+AVYP++     + D    PP+  +   +
Sbjct:  489 ITLYNVPPGSRLRVRARREGDTFTPAWRERPVKLKDFLRGQKVPLHARNDVRLIAWDEERTDGTNGQPIGAGRADASTSPTVLAVYPTHVGRACAHDEGVHPPLSAKANAA 599
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: A0A4D9DAX5_9STRA (tRNA(Ile)-lysidine synthetase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAX5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.400e-11
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 3 
Query:   60 MVLFNVAAGQQLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVC-------DQDDVVIAVYP----SYPAFKVSQDSTGIPPIHVRI 320
            MVL +V  G +L +R +++GDRF P WR  P KLKDFLR Q VPLHRRD+V L+           + VI ++P    + P+      ++ + P+ +R+
Sbjct:  563 MVLPHVPMGARLRLRNRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLIVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRL 660
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: A0A1W1UKA9_PEPAS (tRNA(Ile)-lysidine synthase n=2 Tax=Peptoniphilus asaccharolyticus TaxID=1258 RepID=A0A1W1UKA9_PEPAS)

HSP 1 Score: 58.2 bits (139), Expect = 7.740e-6
Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 3 
Query:   90 QLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVCDQDDVV-IAVYPSYPAFKVSQDSTGIPPIHVRI 320
            QL VR KR+GD+F P+      KLKDF   + +P ++RD VAL+ D ++++ +A Y     +K+ +++  I  I + +
Sbjct:  378 QLKVRNKRNGDKFTPIGMKGSKKLKDFFIDERIPKYKRDSVALIVDDEEIIWVAPYRMNEKYKIEKETEKIVSISLEV 455
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: A0A359BIZ3_9CYAN (tRNA(Ile)-lysidine synthase n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A359BIZ3_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 3.210e-5
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:   63 VLFNVAAGQQLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVCDQDDVV 242
            VL +++  ++L +R ++DGD  QPL      KLK +L  + +P H+RDD+ L+CD+++V+
Sbjct:  354 VLVDLSKYEKLTLRTRKDGDIIQPLGSSGKMKLKKYLMSKNIPQHKRDDLILLCDENEVL 413
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BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Match: UPI001F0F76F2 (tRNA lysidine(34) synthetase TilS n=1 Tax=Acidaminobacter sp. JC074 TaxID=2530199 RepID=UPI001F0F76F2)

HSP 1 Score: 55.8 bits (133), Expect = 4.230e-5
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 3 
Query:   90 QLHVRRKRDGDRFQPLWRDRPTKLKDFLRGQGVPLHRRDDVALVCDQDDVVIAV-YPSYPAFKVSQDST 293
            QL+VR +R GD+F+PL      KLKDF     +P H RD + LVCD ++++  V Y     +KV+  +T
Sbjct:  354 QLYVRTRRPGDKFKPLGMKGRKKLKDFFIDLKIPAHERDQIYLVCDDENIIWVVGYRMNEDYKVTSYTT 422
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JFL6_9PHAE1.590e-5278.38tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus s... [more]
D7FGW8_ECTSI5.510e-5177.48tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus s... [more]
A0A835Z1B5_9STRA1.880e-1675.93tRNA(Ile)-lysidine synthetase n=1 Tax=Tribonema mi... [more]
A0A7S1J5B6_9EUGL1.130e-1354.93Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J5XS81_DIALT1.750e-1336.94tRNA(Ile)-lysidine synthetase n=1 Tax=Diacronema l... [more]
A0A4D9DAX5_9STRA3.400e-1138.78tRNA(Ile)-lysidine synthetase n=4 Tax=Monodopsidac... [more]
A0A1W1UKA9_PEPAS7.740e-634.62tRNA(Ile)-lysidine synthase n=2 Tax=Peptoniphilus ... [more]
A0A359BIZ3_9CYAN3.210e-538.33tRNA(Ile)-lysidine synthase n=2 Tax=Cyanobacteria/... [more]
UPI001F0F76F24.230e-540.58tRNA lysidine(34) synthetase TilS n=1 Tax=Acidamin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1985342..1987205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size943
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4981.1prot_P-fluviatile_contig22.4981.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1985807..1987205 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815958.1509454-UTR-P-fluviatile_contig22:1985341..19858061622815958.1509454-UTR-P-fluviatile_contig22:1985341..1985806Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1985342..1985806 -
1693563849.4259279-UTR-P-fluviatile_contig22:1985341..19858061693563849.4259279-UTR-P-fluviatile_contig22:1985341..1985806Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1985342..1985806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815958.161746-CDS-P-fluviatile_contig22:1985806..19860441622815958.161746-CDS-P-fluviatile_contig22:1985806..1986044Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1985807..1986044 -
1693563849.4476223-CDS-P-fluviatile_contig22:1985806..19860441693563849.4476223-CDS-P-fluviatile_contig22:1985806..1986044Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1985807..1986044 -
1622815958.1776416-CDS-P-fluviatile_contig22:1986376..19865121622815958.1776416-CDS-P-fluviatile_contig22:1986376..1986512Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1986377..1986512 -
1693563849.4620395-CDS-P-fluviatile_contig22:1986376..19865121693563849.4620395-CDS-P-fluviatile_contig22:1986376..1986512Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1986377..1986512 -
1622815958.1884172-CDS-P-fluviatile_contig22:1987102..19872051622815958.1884172-CDS-P-fluviatile_contig22:1987102..1987205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1987103..1987205 -
1693563849.4720187-CDS-P-fluviatile_contig22:1987102..19872051693563849.4720187-CDS-P-fluviatile_contig22:1987102..1987205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1987103..1987205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4981.1

>prot_P-fluviatile_contig22.4981.1 ID=prot_P-fluviatile_contig22.4981.1|Name=mRNA_P-fluviatile_contig22.4981.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=159bp
RPILVGGGAGEWIAGQQSGGWCSLTWLQGSNCTSGGRETETAFSRYGETG
RPSLRTFCADKGCRCTAGTTLPWSVIKTTWSSPSTHLTRRLRFLRTAPAF
HRSTSGSRDLLCFVLALVTEGAPVRSIFGLLSGAAYAAADAVLEDLLRFD
SDYLLRFE*
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mRNA from alignment at P-fluviatile_contig22:1985342..1987205-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4981.1 ID=mRNA_P-fluviatile_contig22.4981.1|Name=mRNA_P-fluviatile_contig22.4981.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1864bp|location=Sequence derived from alignment at P-fluviatile_contig22:1985342..1987205- (Porterinema fluviatile SAG_2381)
CGGCCTATCTTGGTGGGGGGGGGGGCGGGGGAGTGGATTGCCGGGCAGCA
GAGCGGGGGATGGTGCTCTTTAACGTGGCTGCAGGGCAGCAACTGCACGT
CAGGTAATGCAACTTGCGGCGTTTGTGTGAGGAGGTGGTTGCGCACGGGA
GGGCTTTCGTTTTGTTGGCGGTGTGCGTGTGTAGGGGAGATGTGCCTCTC
TAACGCATGTTGATTGCACCGCAGTCTTCTGAGGCGGTTTGATAGATGGC
GGCACGTCGGGTCTACGAGAAGGCATCGCTTGTCGCGCATTTTCGTGGCA
CACATGGTCCTTACGGCAGTAACGGCCACGTTGTTTCTTGGCGGTTCCGC
AAACGGTCCTTCCTGACGCAATCAATGATCCCACGATACCTGGTGATGGC
TCACACAACCATTTTTTTGGTCGACGTCCTCGATGGTTTCCGGCACGTGG
TCTCCCGCGATACATCTTCGCTCTCTTCGGACGTTGTTTCGCATCGATGT
TAGCACAACAAGGACGACCGAAGCCCCTGAAACAATTTTCTCTGGCATGG
ACGCTTCCAATTGCTCGGCAAACGATGTCGCAGTGCCCCTGGCTGTGCGT
TCTGCACAACGACATACAGCACTCGGCGCTGGGAAATGCATACCCGGCTT
TTACGGCGTCCCCCTTTTGCAATGGTCCCGCTTCGATACCCAGGCGGAAG
AGAGACGGAGACCGCTTTCAGCCGTTATGGCGAGACAGGCCGACCAAGCT
TAAGGACTTTCTGCGCGGACAAGGGGTGCCGTTGCACCGCAGGGACGACG
TTGCCTTGGTCTGTGATCAAGACGACGTGGTGAGGGGCCTGCGTCTCACG
CTTGACGCCGCGCAGTGCTGCCGTTCGCGGCTTTCCGCTTGGAGGGTCGG
TGCCAAGAAGAGCCAGTCAACGGACTTTGGTTGTCGTGCGAGTTGCTAAC
CGCTGCAGAGCATACTGAAATGGTAGTGGTTCACGAATCATAGCGGCTTG
ATCGCAATGCTGTCAAGATTTCTGGTCTCATTGGGGGTTCATCTCCTTCC
CTGCTTGGCTGGCTAGCTGTCTTACGCCTTGAAGTGCTCGCGCGTCGCTG
GCCCTTTGCGCGTGCTTTGCTCTACCGCTTCCTCGCCACTTACTGTTCTT
TCCGCGTCAAGGTCATCGCCGTCTACCCATCTTACCCGGCGTTTAAGGTT
TCTCAGGACAGCACCGGCATTCCACCGATCCACGTCCGGATCGAGGGATC
TCCTCTGTTTTGTCCTTGCCCTGGTGACAGAGGGGGCACCCGTGCGTAGT
ATCTTCGGCTTGTTAAGCGGGGCGGCATATGCTGCCGCTGACGCCGTGCT
GGAGGACTTGCTGCGATTTGACTCCGATTATCTTTTAAGATTTGAGTAAC
TGCGATTTGATTTAAAGGCACTGAGTGCTATATAATTGTTGAATGTCTGC
TGGGTTTGCTACTCTTTGCTTACCCCAGGGCTCTTCTAAGCGAACGCTTT
CGATGTCGCCCGCAAGAATCATATCGCAGGTTGGAAAGAAAGTTGGGCGG
TGTCGTTTAATAATTGAACGTGTGTGCGGCGTTCGAAGGGGGACAAGATC
CTGGGGGGGGGGGTCGCTAAGCTTTCCAAGGTCGTTCATATCGAAATATT
TTTGAAAACTCCAAGGTGGAGAGATGCTGGAGAATTATGATGTCCATACG
ACGATGACGCCCAGCATTGTTGTTTCGCTTTCGAGGATGTTTGTTCGCCG
CATTTCGAATGCCGACAACTTCGTGAGTACGACTTCAACGGAATGGTCTG
CGCGTTGGTTGCTGCTTCCGGTACGAGTCTTGATTAATGGGATCTCACGG
TGTCACCGGGTGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1985342..1987205-

>mRNA_P-fluviatile_contig22.4981.1 ID=mRNA_P-fluviatile_contig22.4981.1|Name=mRNA_P-fluviatile_contig22.4981.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=954bp|location=Sequence derived from alignment at P-fluviatile_contig22:1985342..1987205- (Porterinema fluviatile SAG_2381)
CGGCCTATCTTGGTGGGGGGGGGGGCGGGGGAGTGGATTGCCGGGCAGCA
GAGCGGGGGATGGTGCTCTTTAACGTGGCTGCAGGGCAGCAACTGCACGT
CAGCGGCCTATCTTGGTGGGGGGGGGGGCGGGGGAGTGGATTGCCGGGCA
GCAGAGCGGGGGATGGTGCTCTTTAACGTGGCTGCAGGGCAGCAACTGCA
CGTCAGGCGGAAGAGAGACGGAGACCGCTTTCAGCCGTTATGGCGAGACA
GGCCGACCAAGCTTAAGGACTTTCTGCGCGGACAAGGGGTGCCGTTGCAC
CGCAGGGACGACGTTGCCTTGGTCTGTGATCAAGACGACGTGGCGGAAGA
GAGACGGAGACCGCTTTCAGCCGTTATGGCGAGACAGGCCGACCAAGCTT
AAGGACTTTCTGCGCGGACAAGGGGTGCCGTTGCACCGCAGGGACGACGT
TGCCTTGGTCTGTGATCAAGACGACGTGGTCATCGCCGTCTACCCATCTT
ACCCGGCGTTTAAGGTTTCTCAGGACAGCACCGGCATTCCACCGATCCAC
GTCCGGATCGAGGGATCTCCTCTGTTTTGTCCTTGCCCTGGTGACAGAGG
GGGCACCCGTGCGTAGTATCTTCGGCTTGTTAAGCGGGGCGGCATATGCT
GCCGCTGACGCCGTGCTGGAGGACTTGCTGCGATTTGACTCCGATTATCT
TTTAAGATTTGAGTAAGTCATCGCCGTCTACCCATCTTACCCGGCGTTTA
AGGTTTCTCAGGACAGCACCGGCATTCCACCGATCCACGTCCGGATCGAG
GGATCTCCTCTGTTTTGTCCTTGCCCTGGTGACAGAGGGGGCACCCGTGC
GTAGTATCTTCGGCTTGTTAAGCGGGGCGGCATATGCTGCCGCTGACGCC
GTGCTGGAGGACTTGCTGCGATTTGACTCCGATTATCTTTTAAGATTTGA
GTAA
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