mRNA_P-fluviatile_contig22.4975.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4975.1
Unique NamemRNA_P-fluviatile_contig22.4975.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1939195..1939965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size771
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4975.1prot_P-fluviatile_contig22.4975.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1939230..1939679 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815959.216665-UTR-P-fluviatile_contig22:1939194..19392291622815959.216665-UTR-P-fluviatile_contig22:1939194..1939229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1939195..1939229 +
1693563853.4649177-UTR-P-fluviatile_contig22:1939194..19392291693563853.4649177-UTR-P-fluviatile_contig22:1939194..1939229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1939195..1939229 +
1622815959.2372587-UTR-P-fluviatile_contig22:1939679..19399651622815959.2372587-UTR-P-fluviatile_contig22:1939679..1939965Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1939680..1939965 +
1693563853.4852924-UTR-P-fluviatile_contig22:1939679..19399651693563853.4852924-UTR-P-fluviatile_contig22:1939679..1939965Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1939680..1939965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815959.227918-CDS-P-fluviatile_contig22:1939229..19396791622815959.227918-CDS-P-fluviatile_contig22:1939229..1939679Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1939230..1939679 +
1693563853.4729118-CDS-P-fluviatile_contig22:1939229..19396791693563853.4729118-CDS-P-fluviatile_contig22:1939229..1939679Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1939230..1939679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4975.1

>prot_P-fluviatile_contig22.4975.1 ID=prot_P-fluviatile_contig22.4975.1|Name=mRNA_P-fluviatile_contig22.4975.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=150bp
MSHPRAAWMSGHRCRWAASCAWYFAPGSACILRLGIPSCPCEFHHGPCSA
SDGAGRFANPNVGKRLNIMALKVFPLVDGVSPRRRAPRARLWARNGSIVS
AFSVTYALIAQLPHAVVGWLSGNALLGPTCHSAFSMMGVTSSMEAKGSG*
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mRNA from alignment at P-fluviatile_contig22:1939195..1939965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4975.1 ID=mRNA_P-fluviatile_contig22.4975.1|Name=mRNA_P-fluviatile_contig22.4975.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=771bp|location=Sequence derived from alignment at P-fluviatile_contig22:1939195..1939965+ (Porterinema fluviatile SAG_2381)
CGAGAAAAGAAAAAAAAACGCCGTTTTTTTTTTTAATGTCTCACCCGCGC
GCGGCCTGGATGAGCGGTCATCGATGCCGATGGGCGGCGTCCTGTGCTTG
GTATTTCGCCCCGGGATCGGCATGCATCCTACGGTTGGGGATTCCATCAT
GCCCGTGCGAATTCCATCATGGCCCCTGTTCCGCGTCTGATGGTGCTGGG
CGGTTTGCTAATCCAAACGTGGGCAAACGATTGAACATCATGGCGCTGAA
GGTTTTCCCACTCGTAGACGGTGTTTCCCCGCGTCGGCGGGCTCCACGAG
CAAGGCTCTGGGCTCGGAACGGATCAATCGTTTCAGCGTTTTCCGTGACT
TACGCGTTGATAGCTCAGCTCCCCCACGCGGTGGTCGGCTGGCTCAGTGG
CAATGCTCTGCTAGGACCCACTTGTCACTCAGCGTTTTCCATGATGGGTG
TGACCTCTTCAATGGAAGCTAAGGGCAGCGGCTGAATCATAGATCAAGCC
CAAACATGGGGTGGTTAAGTGAATGGCCACCGGTGGATTTGGCCAAAAGA
AAGCTAGACGCTGATGGGCGTGTTATACGATGATGAGGTGGACCTGACAA
AAAGGCAGAGATTCATAGCGAAAAAAAAAGTGTCTCGAGTTTGTGGGACC
TTGCCCTTGCTCCACAGCCCCGAAACAGAATGTTGTTGAGTTGAGTCCGA
CCCCATCGGAGGCTGGGGCTCAACCCCCGAAGTGTGGGATTATTCGACGG
CAACTTCGAAAATCAAGCGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1939195..1939965+

>mRNA_P-fluviatile_contig22.4975.1 ID=mRNA_P-fluviatile_contig22.4975.1|Name=mRNA_P-fluviatile_contig22.4975.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=900bp|location=Sequence derived from alignment at P-fluviatile_contig22:1939195..1939965+ (Porterinema fluviatile SAG_2381)
ATGTCTCACCCGCGCGCGGCCTGGATGAGCGGTCATCGATGCCGATGGGC
GGCGTCCTGTGCTTGGTATTTCGCCCCGGGATCGGCATGCATCCTACGGT
TGGGGATTCCATCATGCCCGTGCGAATTCCATCATGGCCCCTGTTCCGCG
TCTGATGGTGCTGGGCGGTTTGCTAATCCAAACGTGGGCAAACGATTGAA
CATCATGGCGCTGAAGGTTTTCCCACTCGTAGACGGTGTTTCCCCGCGTC
GGCGGGCTCCACGAGCAAGGCTCTGGGCTCGGAACGGATCAATCGTTTCA
GCGTTTTCCGTGACTTACGCGTTGATAGCTCAGCTCCCCCACGCGGTGGT
CGGCTGGCTCAGTGGCAATGCTCTGCTAGGACCCACTTGTCACTCAGCGT
TTTCCATGATGGGTGTGACCTCTTCAATGGAAGCTAAGGGCAGCGGCTGA
ATGTCTCACCCGCGCGCGGCCTGGATGAGCGGTCATCGATGCCGATGGGC
GGCGTCCTGTGCTTGGTATTTCGCCCCGGGATCGGCATGCATCCTACGGT
TGGGGATTCCATCATGCCCGTGCGAATTCCATCATGGCCCCTGTTCCGCG
TCTGATGGTGCTGGGCGGTTTGCTAATCCAAACGTGGGCAAACGATTGAA
CATCATGGCGCTGAAGGTTTTCCCACTCGTAGACGGTGTTTCCCCGCGTC
GGCGGGCTCCACGAGCAAGGCTCTGGGCTCGGAACGGATCAATCGTTTCA
GCGTTTTCCGTGACTTACGCGTTGATAGCTCAGCTCCCCCACGCGGTGGT
CGGCTGGCTCAGTGGCAATGCTCTGCTAGGACCCACTTGTCACTCAGCGT
TTTCCATGATGGGTGTGACCTCTTCAATGGAAGCTAAGGGCAGCGGCTGA
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