mRNA_P-fluviatile_contig22.4921.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4921.1
Unique NamemRNA_P-fluviatile_contig22.4921.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4921.1 vs. uniprot
Match: Q8QNL0_ESV1K (EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL0_ESV1K)

HSP 1 Score: 106 bits (265), Expect = 3.010e-28
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   85 PNSLRFRCSEDEWYSEHEDALLDIWHAVEDSIKNRGIVMLDKCRFNHFCDFVISMTTTQRERCV 276
            P  + FR S+D WYSE+ED LLDIWHAV+D IK+RGIVMLDKCRFNHFC FV+SMTTT R+ C+
Sbjct:   26 PQGVTFRHSDDTWYSENEDELLDIWHAVQDIIKSRGIVMLDKCRFNHFCAFVVSMTTTNRDNCI 89
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BLAST of mRNA_P-fluviatile_contig22.4921.1 vs. uniprot
Match: D8LP94_ECTSI (EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP94_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 7.050e-27
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:   85 PNSLRFRCSEDEWYSEHEDALLDIWHAVEDSIKNRGIVMLDKCRFNHFCDFVISMTTTQRERCV 276
            P  + FR S+D WYSE+ED LLDIWH ++D IK+RGIVMLDKCRFNHFC FV+SMTTT R+ C+
Sbjct:   26 PQGVTFRHSDDTWYSENEDDLLDIWHTLQDIIKSRGIVMLDKCRFNHFCAFVVSMTTTPRDNCI 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNL0_ESV1K3.010e-2871.88EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP94_ECTSI7.050e-2768.75EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1351959..1352240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-61
Ec32 orthologEc-06_006180.1
Exons1
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815978.6365836-CDS-P-fluviatile_contig22:1351958..13522401622815978.6365836-CDS-P-fluviatile_contig22:1351958..1352240Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1351959..1352240 -
1693563928.8907378-CDS-P-fluviatile_contig22:1351958..13522401693563928.8907378-CDS-P-fluviatile_contig22:1351958..1352240Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1351959..1352240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4921.1prot_P-fluviatile_contig22.4921.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1351959..1352240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4921.1

>prot_P-fluviatile_contig22.4921.1 ID=prot_P-fluviatile_contig22.4921.1|Name=mRNA_P-fluviatile_contig22.4921.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=94bp
MAYPTSPLPRQATSPCPVRPSRPVRPARPNSLRFRCSEDEWYSEHEDALL
DIWHAVEDSIKNRGIVMLDKCRFNHFCDFVISMTTTQRERCVQ*
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mRNA from alignment at P-fluviatile_contig22:1351959..1352240-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4921.1 ID=mRNA_P-fluviatile_contig22.4921.1|Name=mRNA_P-fluviatile_contig22.4921.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=282bp|location=Sequence derived from alignment at P-fluviatile_contig22:1351959..1352240- (Porterinema fluviatile SAG_2381)
ATGGCGTATCCCACCTCTCCTTTGCCGCGCCAGGCTACCTCCCCGTGCCC
AGTGCGCCCCTCGCGCCCGGTGCGACCGGCGAGACCCAATAGTTTACGGT
TTAGGTGCTCGGAGGACGAATGGTATTCGGAACATGAAGACGCATTGCTC
GACATATGGCACGCCGTGGAAGACAGCATCAAGAATCGGGGAATTGTCAT
GTTAGATAAATGTAGATTCAATCATTTCTGTGACTTCGTGATTTCAATGA
CAACCACGCAAAGAGAGCGCTGTGTACAATAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1351959..1352240-

>mRNA_P-fluviatile_contig22.4921.1 ID=mRNA_P-fluviatile_contig22.4921.1|Name=mRNA_P-fluviatile_contig22.4921.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=564bp|location=Sequence derived from alignment at P-fluviatile_contig22:1351959..1352240- (Porterinema fluviatile SAG_2381)
ATGGCGTATCCCACCTCTCCTTTGCCGCGCCAGGCTACCTCCCCGTGCCC
AGTGCGCCCCTCGCGCCCGGTGCGACCGGCGAGACCCAATAGTTTACGGT
TTAGGTGCTCGGAGGACGAATGGTATTCGGAACATGAAGACGCATTGCTC
GACATATGGCACGCCGTGGAAGACAGCATCAAGAATCGGGGAATTGTCAT
GTTAGATAAATGTAGATTCAATCATTTCTGTGACTTCGTGATTTCAATGA
CAACCACGCAAAGAGAGCGCTGTGTACAATAAATGGCGTATCCCACCTCT
CCTTTGCCGCGCCAGGCTACCTCCCCGTGCCCAGTGCGCCCCTCGCGCCC
GGTGCGACCGGCGAGACCCAATAGTTTACGGTTTAGGTGCTCGGAGGACG
AATGGTATTCGGAACATGAAGACGCATTGCTCGACATATGGCACGCCGTG
GAAGACAGCATCAAGAATCGGGGAATTGTCATGTTAGATAAATGTAGATT
CAATCATTTCTGTGACTTCGTGATTTCAATGACAACCACGCAAAGAGAGC
GCTGTGTACAATAA
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