mRNA_P-fluviatile_contig22.4910.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4910.1
Unique NamemRNA_P-fluviatile_contig22.4910.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4910.1 vs. uniprot
Match: D8LPA8_ECTSI (EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA8_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 8.740e-137
Identity = 194/239 (81.17%), Postives = 211/239 (88.28%), Query Frame = 1 
Query:    1 MAGTASTNLTYKTFPDVDFSSLRLDGIRLGKNGMKFANLVCANGRRMVIETPAMTIPWNTEIRRNEENGQCSSKIALSFQGMGD-AGDDGKLRRFFNFLNGVDRKVKELALENKAELWQKNMDAGKIEAVFQSSVKPSSNDKYPPTFQGKIPLQEGKNPQADDVNEAMEMKIVVFRKDKTPVSPSELRGGCLASVIAEAAYVWCTPMMIGISWVVKFVLVEPKMRENEFQFTDTEDFAD 714
            MA   + NLTYKTFPDVDFS+++ DGIR GKNGMKFANLV  NGRR+V ETPAM IPWNTEIR++EE GQCSSKIALSFQGM D   DDGKLRRFFNFLNGVD++VKELA +NK ELWQK MDAGKIEA FQSSVK S+NDKYPPTFQGKIPLQEGKNP ++D NEAM+MKIVVFRKDKTPVSP EL+GGCLASVIAEA+YVWCTPMMIGISW+VKFVLVEPK  E  FQFTD EDFAD
Sbjct:    1 MASKMNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFANLVGGNGRRLVAETPAMKIPWNTEIRKSEETGQCSSKIALSFQGMSDDQEDDGKLRRFFNFLNGVDKRVKELAAQNKTELWQKTMDAGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDANEAMDMKIVVFRKDKTPVSPRELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKPSETAFQFTDMEDFAD 239
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BLAST of mRNA_P-fluviatile_contig22.4910.1 vs. uniprot
Match: Q8QNJ7_ESV1K (EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ7_ESV1K)

HSP 1 Score: 395 bits (1016), Expect = 2.970e-136
Identity = 192/239 (80.33%), Postives = 213/239 (89.12%), Query Frame = 1 
Query:    1 MAGTASTNLTYKTFPDVDFSSLRLDGIRLGKNGMKFANLVCANGRRMVIETPAMTIPWNTEIRRNEENGQCSSKIALSFQGMGD-AGDDGKLRRFFNFLNGVDRKVKELALENKAELWQKNMDAGKIEAVFQSSVKPSSNDKYPPTFQGKIPLQEGKNPQADDVNEAMEMKIVVFRKDKTPVSPSELRGGCLASVIAEAAYVWCTPMMIGISWVVKFVLVEPKMRENEFQFTDTEDFAD 714
            MA   + NLTYKTFPDVDFS+++ DGIR GKNGMKFA+LV  NGRR+V ETPAM IPWNTEIR++EE GQCSSKIALSFQGM D   DDGKLRRFFNFLNGVD +VKELA++NK+ELWQK MD GKIEA FQSSVK S+NDKYPPTFQGKIPLQEGKNP ++DVNEAM+MKIVVFRKDKTPVSP EL+GGCLASVIAEA+YVWCTPMMIGISW+VKFVLVEPK  E EFQFTD ++FAD
Sbjct:    1 MASKTNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFASLVGGNGRRLVAETPAMRIPWNTEIRKSEETGQCSSKIALSFQGMSDDQADDGKLRRFFNFLNGVDERVKELAVQNKSELWQKAMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDVNEAMDMKIVVFRKDKTPVSPKELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKPSETEFQFTDMDEFAD 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPA8_ECTSI8.740e-13781.17EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNJ7_ESV1K2.970e-13680.33EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1328944..1329828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-76
Ec32 orthologEc-06_006040.1
Exons1
Model size885
Cds size885
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815978.2482386-CDS-P-fluviatile_contig22:1328943..13298281622815978.2482386-CDS-P-fluviatile_contig22:1328943..1329828Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1328944..1329828 -
1693563925.4010603-CDS-P-fluviatile_contig22:1328943..13298281693563925.4010603-CDS-P-fluviatile_contig22:1328943..1329828Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1328944..1329828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4910.1prot_P-fluviatile_contig22.4910.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1328944..1329828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4910.1

>prot_P-fluviatile_contig22.4910.1 ID=prot_P-fluviatile_contig22.4910.1|Name=mRNA_P-fluviatile_contig22.4910.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=295bp
MAGTASTNLTYKTFPDVDFSSLRLDGIRLGKNGMKFANLVCANGRRMVIE
TPAMTIPWNTEIRRNEENGQCSSKIALSFQGMGDAGDDGKLRRFFNFLNG
VDRKVKELALENKAELWQKNMDAGKIEAVFQSSVKPSSNDKYPPTFQGKI
PLQEGKNPQADDVNEAMEMKIVVFRKDKTPVSPSELRGGCLASVIAEAAY
VWCTPMMIGISWVVKFVLVEPKMRENEFQFTDTEDFADPVVTHGEGEQES
SNKRKRGLSEDEGGSNDDEGEGEEGKEEEEEEEEGDEQDEEEFK*
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mRNA from alignment at P-fluviatile_contig22:1328944..1329828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4910.1 ID=mRNA_P-fluviatile_contig22.4910.1|Name=mRNA_P-fluviatile_contig22.4910.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=885bp|location=Sequence derived from alignment at P-fluviatile_contig22:1328944..1329828- (Porterinema fluviatile SAG_2381)
ATGGCCGGAACCGCGAGCACCAACCTGACCTACAAGACATTCCCCGACGT
CGACTTCTCATCCCTCAGGTTGGACGGGATACGTCTCGGCAAGAACGGCA
TGAAGTTCGCCAACCTTGTGTGCGCAAACGGTCGCCGTATGGTGATCGAG
ACGCCAGCGATGACAATCCCATGGAACACGGAAATCAGGAGGAACGAGGA
GAACGGGCAGTGTTCCTCCAAGATCGCCCTCTCTTTCCAGGGAATGGGTG
ACGCGGGGGACGACGGCAAACTCCGCCGTTTCTTCAACTTTCTCAATGGC
GTGGACAGGAAAGTCAAGGAGCTCGCCCTTGAGAACAAGGCCGAGCTCTG
GCAGAAGAACATGGACGCGGGAAAGATCGAAGCTGTCTTCCAGAGCTCGG
TCAAGCCGTCAAGCAATGACAAGTACCCTCCCACATTCCAGGGGAAGATT
CCTCTGCAAGAAGGAAAGAATCCGCAGGCCGATGATGTGAACGAGGCGAT
GGAGATGAAGATTGTGGTTTTCCGGAAGGATAAGACCCCGGTCTCTCCCT
CGGAGCTCAGGGGCGGGTGTCTCGCCTCCGTGATCGCGGAGGCCGCGTAC
GTGTGGTGCACTCCGATGATGATCGGCATATCGTGGGTCGTGAAATTTGT
TCTGGTCGAGCCAAAGATGAGGGAGAACGAGTTCCAATTCACCGACACGG
AAGACTTCGCGGACCCGGTTGTGACGCACGGGGAGGGAGAACAAGAGAGT
AGCAACAAGCGCAAGCGAGGTCTGTCCGAAGATGAAGGTGGTAGCAATGA
CGACGAGGGGGAAGGGGAGGAGGGGAAGGAAGAGGAGGAAGAGGAGGAAG
AGGGAGATGAGCAAGATGAAGAAGAGTTTAAGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1328944..1329828-

>mRNA_P-fluviatile_contig22.4910.1 ID=mRNA_P-fluviatile_contig22.4910.1|Name=mRNA_P-fluviatile_contig22.4910.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1770bp|location=Sequence derived from alignment at P-fluviatile_contig22:1328944..1329828- (Porterinema fluviatile SAG_2381)
ATGGCCGGAACCGCGAGCACCAACCTGACCTACAAGACATTCCCCGACGT
CGACTTCTCATCCCTCAGGTTGGACGGGATACGTCTCGGCAAGAACGGCA
TGAAGTTCGCCAACCTTGTGTGCGCAAACGGTCGCCGTATGGTGATCGAG
ACGCCAGCGATGACAATCCCATGGAACACGGAAATCAGGAGGAACGAGGA
GAACGGGCAGTGTTCCTCCAAGATCGCCCTCTCTTTCCAGGGAATGGGTG
ACGCGGGGGACGACGGCAAACTCCGCCGTTTCTTCAACTTTCTCAATGGC
GTGGACAGGAAAGTCAAGGAGCTCGCCCTTGAGAACAAGGCCGAGCTCTG
GCAGAAGAACATGGACGCGGGAAAGATCGAAGCTGTCTTCCAGAGCTCGG
TCAAGCCGTCAAGCAATGACAAGTACCCTCCCACATTCCAGGGGAAGATT
CCTCTGCAAGAAGGAAAGAATCCGCAGGCCGATGATGTGAACGAGGCGAT
GGAGATGAAGATTGTGGTTTTCCGGAAGGATAAGACCCCGGTCTCTCCCT
CGGAGCTCAGGGGCGGGTGTCTCGCCTCCGTGATCGCGGAGGCCGCGTAC
GTGTGGTGCACTCCGATGATGATCGGCATATCGTGGGTCGTGAAATTTGT
TCTGGTCGAGCCAAAGATGAGGGAGAACGAGTTCCAATTCACCGACACGG
AAGACTTCGCGGACCCGGTTGTGACGCACGGGGAGGGAGAACAAGAGAGT
AGCAACAAGCGCAAGCGAGGTCTGTCCGAAGATGAAGGTGGTAGCAATGA
CGACGAGGGGGAAGGGGAGGAGGGGAAGGAAGAGGAGGAAGAGGAGGAAG
AGGGAGATGAGCAAGATGAAGAAGAGTTTAAGTAGATGGCCGGAACCGCG
AGCACCAACCTGACCTACAAGACATTCCCCGACGTCGACTTCTCATCCCT
CAGGTTGGACGGGATACGTCTCGGCAAGAACGGCATGAAGTTCGCCAACC
TTGTGTGCGCAAACGGTCGCCGTATGGTGATCGAGACGCCAGCGATGACA
ATCCCATGGAACACGGAAATCAGGAGGAACGAGGAGAACGGGCAGTGTTC
CTCCAAGATCGCCCTCTCTTTCCAGGGAATGGGTGACGCGGGGGACGACG
GCAAACTCCGCCGTTTCTTCAACTTTCTCAATGGCGTGGACAGGAAAGTC
AAGGAGCTCGCCCTTGAGAACAAGGCCGAGCTCTGGCAGAAGAACATGGA
CGCGGGAAAGATCGAAGCTGTCTTCCAGAGCTCGGTCAAGCCGTCAAGCA
ATGACAAGTACCCTCCCACATTCCAGGGGAAGATTCCTCTGCAAGAAGGA
AAGAATCCGCAGGCCGATGATGTGAACGAGGCGATGGAGATGAAGATTGT
GGTTTTCCGGAAGGATAAGACCCCGGTCTCTCCCTCGGAGCTCAGGGGCG
GGTGTCTCGCCTCCGTGATCGCGGAGGCCGCGTACGTGTGGTGCACTCCG
ATGATGATCGGCATATCGTGGGTCGTGAAATTTGTTCTGGTCGAGCCAAA
GATGAGGGAGAACGAGTTCCAATTCACCGACACGGAAGACTTCGCGGACC
CGGTTGTGACGCACGGGGAGGGAGAACAAGAGAGTAGCAACAAGCGCAAG
CGAGGTCTGTCCGAAGATGAAGGTGGTAGCAATGACGACGAGGGGGAAGG
GGAGGAGGGGAAGGAAGAGGAGGAAGAGGAGGAAGAGGGAGATGAGCAAG
ATGAAGAAGAGTTTAAGTAG
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