mRNA_P-fluviatile_contig22.4906.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4906.1
Unique NamemRNA_P-fluviatile_contig22.4906.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: D8LPB4_ECTSI (UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB4_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 7.670e-116
Identity = 171/270 (63.33%), Postives = 209/270 (77.41%), Query Frame = 1
Query:   10 GILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRPVVCRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAIL-RDMGEPTLPEFVLRYSDETSLTHRS 816
            GILG GE+GSSL +VY+LAG  D V+VRDP +G D+ LS C +VNVCIPF + +  F + LR L LR GCVV+IQSTV  GCTD VQA++P +VC  SPVRGVHP+L +G+L F+KYVG+SD F  D++ +S +T H++SL ++PVVCR+KESELAK++STTLYG+NIAAITDVS++CD  GVDF  VFT+WQ GYNAGY ALG  NVCRPVLTPIP   E E  G  K+VIGGHC+L NC IL R+M E TL  FVLRYSDE    HR+
Sbjct:    5 GILGNGEIGSSLHRVYQLAGDAD-VIVRDPIQGLDASLSHCGVVNVCIPFRN-YDEFVTALRDLALREGCVVIIQSTVAVGCTDRVQADLPTLVCAQSPVRGVHPHLTDGLLTFDKYVGVSDRFAGDDAIESFLTQHMKSLGMKPVVCRAKESELAKLISTTLYGVNIAAITDVSKLCDDAGVDFEKVFTQWQTGYNAGYTALGKSNVCRPVLTPIP---ENEEDG--KQVIGGHCILSNCCILEREMEETTLSSFVLRYSDERHPRHRA 267          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: Q8QNJ0_ESV1K (EsV-1-83 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ0_ESV1K)

HSP 1 Score: 330 bits (846), Expect = 4.110e-111
Identity = 169/263 (64.26%), Postives = 201/263 (76.43%), Query Frame = 1
Query:   10 GILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRPVVCRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAIL-RDMGEPTLPEFVLRYSDE 795
            GILG GE+GSSL KVY+LAG  D VVVRDP +G D  LS C  VNVCIPF + +  F  VLR L L+ GCVV+IQSTV  GCTD VQA++P +VC  SPVRGVHP L EG+L FEKYVG+SD F  D+S +S +T H++SL ++PVVCR+KESELAK++STTLYG+NIAAITDVS +C   GVDF  VFT+WQ GYNAGY ALG  NVCRPVLTP+  +++G      K+VIGGHCVL NC IL R+M E TL  FVLRY+DE
Sbjct:    5 GILGNGEIGSSLHKVYQLAGYPD-VVVRDPFQGLDVSLSHCGAVNVCIPFGN-YDGFVKVLRDLKLQKGCVVIIQSTVAVGCTDRVQADLPTLVCAQSPVRGVHPYLTEGLLTFEKYVGVSDRFAGDDSIESFLTRHMKSLGMKPVVCRAKESELAKLISTTLYGVNIAAITDVSNLCKDTGVDFEKVFTQWQTGYNAGYTALGKSNVCRPVLTPVSENEDG------KQVIGGHCVLANCFILEREMAETTLSSFVLRYADE 259          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A382DZI1_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382DZI1_9ZZZZ)

HSP 1 Score: 270 bits (689), Expect = 2.600e-87
Identity = 132/262 (50.38%), Postives = 183/262 (69.85%), Query Frame = 1
Query:   25 GEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRPVVCRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDMGEPTLPEFVLRYSDETSLTH 810
            GE+GSSL K+YE A     ++  DP +  +  L  C IVNVCIPF  G + F + ++ L L+P   ++IQST+G G  D +Q E+  +V + SPVRGVHPNL+EG+L F+KY+G+S+ ++ D   K  + +HL  LN++P++C++KESELAK+VSTTLYG+NIAA+ DV  MC K  VDF  VFT WQ GYN GY  LG  NVCRP+LTPI  +K+G      K++IGGHCV+PN  IL++MG   + ++VLRY+DE++  H
Sbjct:    1 GEIGSSLYKIYEDANY-TNLIKYDPFQNLNDCLCKCKIVNVCIPFF-GLEKFCNAIKLLKLKPNTYLIIQSTIGVGTCDLIQKELDLIV-IQSPVRGVHPNLSEGMLIFDKYMGISEKYYKDIKIKDFMKNHLIDLNMKPIICKAKESELAKVVSTTLYGINIAAVNDVYLMCKKHNVDFDIVFTTWQKGYNDGYTKLGKSNVCRPILTPIKKNKDG------KQLIGGHCVIPNSVILKNMGHHDMADYVLRYADESNKKH 253          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A3M1UUW0_9EURY (UDPG_MGDP_dh domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A3M1UUW0_9EURY)

HSP 1 Score: 161 bits (408), Expect = 5.050e-45
Identity = 103/246 (41.87%), Postives = 134/246 (54.47%), Query Frame = 1
Query:   10 GILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRP-VVCRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILR 744
            GILGFGEVGSSL + Y      D    RD        LSG D++NVCIPF       ++V +   +    + +I STV  G T ++     G   VHSPVRGVHPNL EGI+ F KYVG      + E        HL+SL I+  ++  S E+E+ K+ STT YGL IA   ++ +MCD+ GV+F T  T     YN GY ALGM +V RP+LTP             +  IGGHC++PN  IL+
Sbjct:   14 GILGFGEVGSSLSRCYNSPRIFDLEGGRDD-------LSGIDVLNVCIPFKDS-GFISTVKQAQEMYSPKLTIIHSTVAPGTTSAI-----GGATVHSPVRGVHPNLYEGIMTFVKYVGA-----DSEEVGILACQHLQSLGIQTELILPSIETEVGKLFSTTQYGLYIAMHAELKKMCDEFGVNFETAVTHMNQTYNEGYEALGMAHVKRPLLTP------------PENGIGGHCIIPNAKILK 229          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A2M6T175_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nealsonbacteria bacterium CG08_land_8_20_14_0_20_43_11 TaxID=1974706 RepID=A0A2M6T175_9BACT)

HSP 1 Score: 155 bits (391), Expect = 1.360e-42
Identity = 99/264 (37.50%), Postives = 140/264 (53.03%), Query Frame = 1
Query:   10 GILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGL--GLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRP-VVCRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDMGEPTLPEFVLRYSD 792
            GILG+GEVG ++ K Y+         +RD  +  D+ L+G +I+++CIP+S    +F  +       L+P   + I STV  G T  +  ++ G   VHSPVRGVHPNL +GI  F KY+G        + A+     HL+SL I+  V   +  SE  K+  TT YG  I    ++ + CDK G+DF  V+T     YN GY+ LG P V RP L  IP         G+   IGGHCV+PNC IL    +  + +F+L  S+
Sbjct:   12 GILGYGEVGQAIAKFYK------NPKIRDLNR--DNDLNGVEILHICIPWSD---NFVKITEAAIKELKPKLTI-IHSTVALGTTKKIAGDLAGAKIVHSPVRGVHPNLYKGIKTFVKYIGAET-----KEAREMAQKHLKSLGIKTKVFVPAITSEALKLWDTTQYGWMIVLNKEIKKWCDKNGLDFDVVYTEANKSYNEGYKKLGRPEVVRPYLKYIP---------GK---IGGHCVVPNCQIL----DSEIAKFLLDKSN 242          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A0S7WYT2_9BACT (UDPG_MGDP_dh domain-containing protein n=1 Tax=Parcubacteria bacterium DG_72 TaxID=1703764 RepID=A0A0S7WYT2_9BACT)

HSP 1 Score: 153 bits (386), Expect = 8.930e-42
Identity = 98/273 (35.90%), Postives = 141/273 (51.65%), Query Frame = 1
Query:   10 GILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLR------GLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRP-VVCRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDMGEPTLPEFVLRYSDETSLT 807
            GILG+GEVG ++ K Y      +  +++D  +  D   +G +++NVC+P+      F  +++       LG     +V+I STV  G T  + A+  G++ VHSP+RG+HP L +GI  F KY+G      + + A +   +HL  L +R  V   SK +EL K+ STT YGL IA   ++ R+CD+ GVDF    T +   YN GY  L  PNV RPVL P             K+ IGGHC+  N  ILR        + V +Y  E   T
Sbjct:    5 GILGYGEVGKAIAKFY------NNPLIKDLNR--DDNFAGVEVLNVCLPYKG--DDFVEIVKKEITKLSLGEPKLSLVIIHSTVAPGTTKKI-ADETGIITVHSPIRGIHPELFKGIKTFVKYIGA-----DSQEAGTIAKEHLEGLGMRTKVFIPSKTTELGKLFSTTYYGLCIAFHGEMKRICDQEGVDFEKAVTDFNKTYNEGYTQLRKPNVVRPVLYP------------PKQGIGGHCIYENVDILRKRYNSEALDLVSKYKPENRET 249          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A2D6E124_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2D6E124_9BACT)

HSP 1 Score: 152 bits (383), Expect = 2.640e-41
Identity = 101/265 (38.11%), Postives = 141/265 (53.21%), Query Frame = 1
Query:    4 SFGILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRPVVCR-SKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDMGEPTLPEFVLRYSDE 795
            + GI+G GE+GSSL+ VY      D + ++D  +  D  L    ++N+CIP+S       S    L + P   + I STV    T ++  +I   + VHSPVRGVHP L +GI  F K++G      N+  AK    DHL SLNI+  +C  S  +EL K++STT YGL IA   +V ++C      F  V TR+   YN GY ALG  NV RPVL P           GE  +IGGHCV+PN  ++  +      + +L Y+D+
Sbjct:    8 NIGIIGHGEIGSSLEAVYR--DFTDNIFIKDLDR--DDGLKNIRVLNICIPYSENFVEIVSRYI-LEIDPQFTI-IHSTVIPQTTQTIIEKINDEMIVHSPVRGVHPKLYDGIKTFVKFIGAE----NNVVAKL-AQDHLNSLNIKTEICHDSATTELGKMLSTTYYGLCIAWHGEVQKLCKNYDAPFREVMTRFNETYNDGYAALGKSNVVRPVLYPP----------GE--IIGGHCVIPNAELVSSLMSSPALDLILEYADD 249          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A1G2R8E8_9BACT (UDPG_MGDP_dh domain-containing protein n=1 Tax=Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_48_16 TaxID=1802453 RepID=A0A1G2R8E8_9BACT)

HSP 1 Score: 146 bits (368), Expect = 4.170e-39
Identity = 97/265 (36.60%), Postives = 139/265 (52.45%), Query Frame = 1
Query:   10 GILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRG--LGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRPVVCR-SKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDMGEPTLPEFVLRYSDE 795
            GILG+GEVG ++ K +       +  V+D  +  D   +G D+++VCIP+S   K F  +++G     +P  V+ + STV  G T  +     G + VHSPVRGVHPNL +GI  F KY+G      +D+        HL S+ +   +   S  +EL KI+ TT YG+ IA   ++ R+CD  GVDF +V T +   YN GY  LGM +V RPVL P            EK  IGGHCV+ N  +L    +    + VL +  +
Sbjct:   15 GILGYGEVGQAIAKFFA------KPKVKDLKRKDD--FTGIDVLHVCIPWS---KSFVDIVKGEIRAFKPKLVI-VHSTVIPGTTKKI-----GKLAVHSPVRGVHPNLHKGIRTFVKYIGA-----DDKKVGLLAQKHLESVGMNAKILNPSSTTELGKILDTTYYGVCIAFHKEMMRLCDAFGVDFDSVMTDFNSSYNTGYTKLGMSHVVRPVLKP------------EKGPIGGHCVVQNAELLDTFFKSKAVDLVLAHKQK 245          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A1G2I3I2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_02_FULL_34_9 TaxID=1802206 RepID=A0A1G2I3I2_9BACT)

HSP 1 Score: 143 bits (360), Expect = 5.350e-38
Identity = 95/266 (35.71%), Postives = 139/266 (52.26%), Query Frame = 1
Query:   10 GILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGL--GLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRP-VVCRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDMGEPTLPEFVLRYSDET 798
            GILG+GE+G ++ K Y      +   ++D  +  D  L G D+++VCIP+S   ++F  V+ G    ++P  + +I STV  G T  +   +     VHSPVRGVHP L EG+  F KY+G      +++ A      HL+SL I+  +   SK +ELAK++ TT YG+ IA   ++ ++ DK  VDF    T +   YN GY+ LG  NV RPVL                R IGGHCV PN  +L+          +L YS ++
Sbjct:    9 GILGYGEIGKAIAKFY------NNPKIKDLARNDD--LFGVDVLHVCIPWS---ENFVKVVSGEINNIKPK-ITIIHSTVVPGTTKKIGGSV-----VHSPVRGVHPYLHEGVKTFIKYIGA-----DNKKAAQLAEAHLKSLGIKTKIFYNSKTTELAKLLDTTYYGVIIAWHGEMKKITDKFNVDFEEAVTDFNKTYNEGYKKLGKNNVIRPVLY------------APNRPIGGHCVAPNARLLKKYSNSKAISLILDYSKKS 240          
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Match: A0A3D1B2L1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Staskawiczbacteria bacterium TaxID=2053617 RepID=A0A3D1B2L1_9BACT)

HSP 1 Score: 141 bits (356), Expect = 2.100e-37
Identity = 90/266 (33.83%), Postives = 141/266 (53.01%), Query Frame = 1
Query:    1 MSFGILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVCIPFSSGHKHFASVLRGLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVHSPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRPVVCRSKE-SELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYNAGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDMGEPTLPEFVLRYSDE 795
            M  GILG+G++G ++ K Y+ A       ++D  +  D  L G DI++VCIP+++  K  A+  + +      + +I STV FG T  +  +  G + VHSPVRGVHPNL +GI  F KY+G      +++ A +    HL SL I+  +  S   +E  K+  TT YG  I    ++   C+   VDF  V++     Y  GY+ LG P+V RP L  +P         G+   +GGHC++PNC IL+      + +F+L+ + +
Sbjct:    1 MKIGILGYGQIGQAIAKFYKSASW--RTKIKDLKR--DDGLIGVDILHVCIPYNN--KFIATAAKEIKQINPKLTIIHSTVAFGATKKLADKFSGRI-VHSPVRGVHPNLYKGIKTFVKYIGA-----DNKKAGNLAKRHLESLGIKTKLFNSSRITEAIKLWDTTQYGWMIVLNKEIKEWCNNNKVDFEAVYSEANKTYAQGYKKLGRPDVVRPYLKYMP---------GK---VGGHCIIPNCHILKS----EISKFILKKNSQ 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPB4_ECTSI7.670e-11663.33UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Ecto... [more]
Q8QNJ0_ESV1K4.110e-11164.26EsV-1-83 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
A0A382DZI1_9ZZZZ2.600e-8750.38Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3M1UUW0_9EURY5.050e-4541.87UDPG_MGDP_dh domain-containing protein n=1 Tax=Eur... [more]
A0A2M6T175_9BACT1.360e-4237.50Uncharacterized protein n=1 Tax=Candidatus Nealson... [more]
A0A0S7WYT2_9BACT8.930e-4235.90UDPG_MGDP_dh domain-containing protein n=1 Tax=Par... [more]
A0A2D6E124_9BACT2.640e-4138.11Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A1G2R8E8_9BACT4.170e-3936.60UDPG_MGDP_dh domain-containing protein n=1 Tax=Can... [more]
A0A1G2I3I2_9BACT5.350e-3835.71Uncharacterized protein n=1 Tax=Candidatus Staskaw... [more]
A0A3D1B2L1_9BACT2.100e-3733.83Uncharacterized protein n=1 Tax=Candidatus Staskaw... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1322209..1323042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score78.6
Seed ortholog evalue5.2e-12
Seed eggNOG ortholog694429.Pyrfu_1842
KEGG rclassRC00291
KEGG koko:K02472
KEGG ReactionR03317
KEGG Pathwayko00520,ko05111,map00520,map05111
EggNOG free text desc.GDP-mannose dehydrogenase
EggNOG OGs2XRM4@28889,COG0677@1,arCOG00252@2157
EC1.1.1.336
COG Functional cat.M
Best tax levelCrenarchaeota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-83 UDP-glucose/GDP-mannose dehydrogenase
Ec32 orthologEc-06_005980.1
Exons1
Model size834
Cds size834
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815978.1137767-CDS-P-fluviatile_contig22:1322208..13230421622815978.1137767-CDS-P-fluviatile_contig22:1322208..1323042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1322209..1323042 -
1693563925.3602827-CDS-P-fluviatile_contig22:1322208..13230421693563925.3602827-CDS-P-fluviatile_contig22:1322208..1323042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1322209..1323042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4906.1prot_P-fluviatile_contig22.4906.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1322209..1323042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4906.1

>prot_P-fluviatile_contig22.4906.1 ID=prot_P-fluviatile_contig22.4906.1|Name=mRNA_P-fluviatile_contig22.4906.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=278bp
MSFGILGFGEVGSSLKKVYELAGRGDEVVVRDPCKGFDSPLSGCDIVNVC
IPFSSGHKHFASVLRGLGLRPGCVVMIQSTVGFGCTDSVQAEIPGVVCVH
SPVRGVHPNLAEGILAFEKYVGLSDMFFNDESAKSRVTDHLRSLNIRPVV
CRSKESELAKIVSTTLYGLNIAAITDVSRMCDKRGVDFGTVFTRWQMGYN
AGYRALGMPNVCRPVLTPIPISKEGEGSGGEKRVIGGHCVLPNCAILRDM
GEPTLPEFVLRYSDETSLTHRSAESEG*
back to top

mRNA from alignment at P-fluviatile_contig22:1322209..1323042-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4906.1 ID=mRNA_P-fluviatile_contig22.4906.1|Name=mRNA_P-fluviatile_contig22.4906.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=834bp|location=Sequence derived from alignment at P-fluviatile_contig22:1322209..1323042- (Porterinema fluviatile SAG_2381)
ATGTCGTTCGGAATACTGGGATTCGGGGAGGTCGGATCGTCGCTGAAAAA GGTGTACGAGCTGGCGGGTCGCGGAGACGAAGTAGTGGTGCGCGATCCCT GCAAAGGTTTCGACTCGCCCCTCTCTGGATGCGACATCGTCAACGTGTGC ATTCCCTTTTCTTCCGGACACAAACACTTCGCCAGCGTCCTGCGGGGTCT CGGTCTCCGGCCCGGGTGCGTCGTAATGATCCAGTCTACCGTTGGGTTCG GGTGCACGGACAGCGTGCAGGCTGAGATACCGGGTGTTGTGTGCGTGCAC TCCCCCGTGCGTGGCGTACACCCGAACCTCGCCGAGGGAATTCTCGCGTT TGAAAAGTACGTCGGTTTAAGCGACATGTTCTTTAACGACGAATCTGCCA AGTCTCGCGTCACCGACCACCTCCGCTCGCTCAACATCCGGCCCGTGGTG TGCCGATCCAAAGAGTCCGAGCTGGCCAAAATTGTGTCCACCACTTTGTA CGGGTTGAACATCGCGGCGATCACCGACGTGTCCCGGATGTGCGACAAAC GGGGCGTCGACTTCGGCACCGTCTTCACGCGGTGGCAGATGGGCTACAAC GCCGGCTACCGAGCTCTGGGGATGCCGAACGTCTGCCGCCCGGTTCTCAC ACCCATCCCCATATCGAAAGAGGGGGAGGGGAGCGGCGGGGAAAAGCGAG TGATCGGAGGGCACTGCGTTCTCCCCAACTGCGCGATCCTCCGTGATATG GGCGAACCGACCCTGCCGGAGTTTGTCCTCAGGTACTCGGACGAGACCAG CCTGACACATCGATCCGCGGAGAGTGAAGGATGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig22:1322209..1323042-

>mRNA_P-fluviatile_contig22.4906.1 ID=mRNA_P-fluviatile_contig22.4906.1|Name=mRNA_P-fluviatile_contig22.4906.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1668bp|location=Sequence derived from alignment at P-fluviatile_contig22:1322209..1323042- (Porterinema fluviatile SAG_2381)
ATGTCGTTCGGAATACTGGGATTCGGGGAGGTCGGATCGTCGCTGAAAAA
GGTGTACGAGCTGGCGGGTCGCGGAGACGAAGTAGTGGTGCGCGATCCCT
GCAAAGGTTTCGACTCGCCCCTCTCTGGATGCGACATCGTCAACGTGTGC
ATTCCCTTTTCTTCCGGACACAAACACTTCGCCAGCGTCCTGCGGGGTCT
CGGTCTCCGGCCCGGGTGCGTCGTAATGATCCAGTCTACCGTTGGGTTCG
GGTGCACGGACAGCGTGCAGGCTGAGATACCGGGTGTTGTGTGCGTGCAC
TCCCCCGTGCGTGGCGTACACCCGAACCTCGCCGAGGGAATTCTCGCGTT
TGAAAAGTACGTCGGTTTAAGCGACATGTTCTTTAACGACGAATCTGCCA
AGTCTCGCGTCACCGACCACCTCCGCTCGCTCAACATCCGGCCCGTGGTG
TGCCGATCCAAAGAGTCCGAGCTGGCCAAAATTGTGTCCACCACTTTGTA
CGGGTTGAACATCGCGGCGATCACCGACGTGTCCCGGATGTGCGACAAAC
GGGGCGTCGACTTCGGCACCGTCTTCACGCGGTGGCAGATGGGCTACAAC
GCCGGCTACCGAGCTCTGGGGATGCCGAACGTCTGCCGCCCGGTTCTCAC
ACCCATCCCCATATCGAAAGAGGGGGAGGGGAGCGGCGGGGAAAAGCGAG
TGATCGGAGGGCACTGCGTTCTCCCCAACTGCGCGATCCTCCGTGATATG
GGCGAACCGACCCTGCCGGAGTTTGTCCTCAGGTACTCGGACGAGACCAG
CCTGACACATCGATCCGCGGAGAGTGAAGGATGAATGTCGTTCGGAATAC
TGGGATTCGGGGAGGTCGGATCGTCGCTGAAAAAGGTGTACGAGCTGGCG
GGTCGCGGAGACGAAGTAGTGGTGCGCGATCCCTGCAAAGGTTTCGACTC
GCCCCTCTCTGGATGCGACATCGTCAACGTGTGCATTCCCTTTTCTTCCG
GACACAAACACTTCGCCAGCGTCCTGCGGGGTCTCGGTCTCCGGCCCGGG
TGCGTCGTAATGATCCAGTCTACCGTTGGGTTCGGGTGCACGGACAGCGT
GCAGGCTGAGATACCGGGTGTTGTGTGCGTGCACTCCCCCGTGCGTGGCG
TACACCCGAACCTCGCCGAGGGAATTCTCGCGTTTGAAAAGTACGTCGGT
TTAAGCGACATGTTCTTTAACGACGAATCTGCCAAGTCTCGCGTCACCGA
CCACCTCCGCTCGCTCAACATCCGGCCCGTGGTGTGCCGATCCAAAGAGT
CCGAGCTGGCCAAAATTGTGTCCACCACTTTGTACGGGTTGAACATCGCG
GCGATCACCGACGTGTCCCGGATGTGCGACAAACGGGGCGTCGACTTCGG
CACCGTCTTCACGCGGTGGCAGATGGGCTACAACGCCGGCTACCGAGCTC
TGGGGATGCCGAACGTCTGCCGCCCGGTTCTCACACCCATCCCCATATCG
AAAGAGGGGGAGGGGAGCGGCGGGGAAAAGCGAGTGATCGGAGGGCACTG
CGTTCTCCCCAACTGCGCGATCCTCCGTGATATGGGCGAACCGACCCTGC
CGGAGTTTGTCCTCAGGTACTCGGACGAGACCAGCCTGACACATCGATCC
GCGGAGAGTGAAGGATGA
back to top