mRNA_P-fluviatile_contig22.4875.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4875.1
Unique NamemRNA_P-fluviatile_contig22.4875.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4875.1 vs. uniprot
Match: D8LPG4_ECTSI (EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI)

HSP 1 Score: 456 bits (1174), Expect = 1.150e-156
Identity = 237/409 (57.95%), Postives = 294/409 (71.88%), Query Frame = 1 
Query:    1 MNLVSWNCAFQFKSSVPADDTPEARDRRLWCDTARPTCYDELVGNGRAILAIEEWYRKAAENPTKSFSLFVHGESGTGKSTAVAMAAKKFQFETVATYADRSRTPARLEGIVREAGVYGARGVVILDDFEIFLSETTSLRVLSKLLRKLVPGTSPQTDSTRSRSPQRCLFVIICNAEHRLFGPLQDISTVVRFERLSSQELHTIHKRLAARVRHHSYVPPMVLYLSSASGSGTITQGIQQLQLLYGGNEKTDFVCSRHRGKKRSLGGTVLCDRTRPANTSDCVSFLRSDIYTDRILHHMLDAKFHRGSVVDRLLGFEKGQLDIVGNQLHEEYARRAASVQQLRSVAESLSAADSNRIEPHADALFDGENRGLWSANDVSYVALVADGIIAIKGQWKRDRNWSQKPRARL 1227
            MNLV+WN A Q +  V  ++   A    LW   A PT + ELVGNG+AI  IE+W+ +A+  P  S  LF+HGESGTGKSTAV M A+K +F+TV TYADRSRTPARLEG+VREAGV+G RGVV+LDDFEIFL ETTSLRVLSKLLR+L+      T  T  R+  RCLF+II N++H+ FG LQDIST + FERL   E++ +  RLA RVR HSYVPPM  YLSS S SGTITQG+QQLQLLY G+   DF+  R   KK+ + G     R       DC+S+L SDIYTD+IL H++D  FH G V+DRL  FE+ +LD VG QLHEEYARR  SV+QLR VAES+S +D+NR+E H DAL+DGEN   WS ND+++V+ VA G++ IKGQ +RD++WS+K   RL
Sbjct:    1 MNLVAWNSAIQIRKRVATENVCTAG--ALWYQVASPTSHQELVGNGKAIRQIEDWFSEASAEPETSACLFLHGESGTGKSTAVTMIAQKHEFKTVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLL-----STGDTSVRNRSRCLFIIISNSKHKQFGSLQDISTTIHFERLHQSEINKVFNRLAWRVRRHSYVPPMASYLSSISSSGTITQGVQQLQLLYAGDTPPDFL-RRPGRKKQKIAGHTNSHR-------DCISYLWSDIYTDKILEHLVDNNFHEGRVIDRLRSFERERLDKVGGQLHEEYARRMTSVEQLRDVAESISMSDTNRLEFHHDALYDGENSDSWSENDMAFVSFVAYGVLTIKGQRRRDQSWSRKTHTRL 394
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPG4_ECTSI1.150e-15657.95EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1268784..1270010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score70.5
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog1042877.GQS_08510
Preferred namerfcL
KEGG koko:K04800
KEGG Pathwayko03030,map03030
EggNOG free text desc.Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA
EggNOG OGs243G0@183968,2XT81@28890,COG0470@1,arCOG00470@2157
COG Functional cat.L
Best tax levelThermococci
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-138 replication factor C large subunit
Ec32 orthologEc-06_005470.1
Exons1
Model size1227
Cds size1227
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815976.982925-CDS-P-fluviatile_contig22:1268783..12700101622815976.982925-CDS-P-fluviatile_contig22:1268783..1270010Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1268784..1270010 -
1693563924.9446783-CDS-P-fluviatile_contig22:1268783..12700101693563924.9446783-CDS-P-fluviatile_contig22:1268783..1270010Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1268784..1270010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4875.1prot_P-fluviatile_contig22.4875.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1268784..1270010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4875.1

>prot_P-fluviatile_contig22.4875.1 ID=prot_P-fluviatile_contig22.4875.1|Name=mRNA_P-fluviatile_contig22.4875.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=409bp
MNLVSWNCAFQFKSSVPADDTPEARDRRLWCDTARPTCYDELVGNGRAIL
AIEEWYRKAAENPTKSFSLFVHGESGTGKSTAVAMAAKKFQFETVATYAD
RSRTPARLEGIVREAGVYGARGVVILDDFEIFLSETTSLRVLSKLLRKLV
PGTSPQTDSTRSRSPQRCLFVIICNAEHRLFGPLQDISTVVRFERLSSQE
LHTIHKRLAARVRHHSYVPPMVLYLSSASGSGTITQGIQQLQLLYGGNEK
TDFVCSRHRGKKRSLGGTVLCDRTRPANTSDCVSFLRSDIYTDRILHHML
DAKFHRGSVVDRLLGFEKGQLDIVGNQLHEEYARRAASVQQLRSVAESLS
AADSNRIEPHADALFDGENRGLWSANDVSYVALVADGIIAIKGQWKRDRN
WSQKPRARL
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mRNA from alignment at P-fluviatile_contig22:1268784..1270010-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4875.1 ID=mRNA_P-fluviatile_contig22.4875.1|Name=mRNA_P-fluviatile_contig22.4875.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1227bp|location=Sequence derived from alignment at P-fluviatile_contig22:1268784..1270010- (Porterinema fluviatile SAG_2381)
ATGAACCTTGTGTCGTGGAACTGCGCTTTCCAATTCAAAAGCAGCGTCCC
TGCTGACGACACACCGGAGGCCAGAGACAGGCGGCTGTGGTGCGACACCG
CTCGGCCGACGTGCTACGACGAGCTCGTCGGGAACGGGAGGGCCATCCTG
GCGATTGAGGAGTGGTACCGCAAGGCCGCCGAAAATCCGACCAAATCCTT
CAGCCTCTTCGTGCACGGCGAGTCCGGGACGGGCAAGTCTACCGCAGTCG
CCATGGCCGCGAAGAAGTTCCAGTTTGAGACGGTCGCCACGTACGCCGAC
CGTTCCAGGACACCCGCCCGGCTGGAGGGCATCGTCCGGGAGGCGGGGGT
GTACGGAGCGCGCGGAGTCGTCATCCTGGACGACTTCGAGATTTTCCTTT
CGGAAACGACGTCGCTCCGGGTCCTGTCGAAGCTCCTCCGAAAACTCGTG
CCGGGCACCTCCCCCCAGACCGACAGCACGAGGTCACGCTCCCCGCAGAG
GTGCCTCTTTGTCATTATCTGCAACGCCGAGCACCGGCTCTTCGGGCCTC
TGCAAGACATCTCCACGGTCGTCCGCTTTGAGAGGCTTTCTTCCCAAGAA
TTACACACGATACACAAACGCCTGGCCGCCAGGGTACGGCACCACTCGTA
CGTGCCTCCGATGGTGCTGTACCTGTCATCGGCGTCGGGCTCGGGGACCA
TCACCCAGGGCATCCAACAGCTCCAGCTCCTATACGGAGGCAACGAAAAG
ACCGACTTCGTTTGCAGCCGCCACCGCGGCAAGAAGCGAAGCCTGGGTGG
GACCGTCCTGTGCGACCGGACCCGACCCGCGAACACGAGCGACTGCGTCT
CATTCCTCCGGTCCGACATATACACGGACCGAATTCTGCACCACATGCTG
GACGCCAAGTTCCACCGGGGAAGCGTCGTCGACAGGCTGCTCGGATTTGA
GAAGGGCCAGCTCGACATCGTCGGCAACCAGCTACACGAGGAATACGCAC
GGAGGGCGGCGTCGGTGCAACAGCTACGGAGCGTCGCGGAGTCTCTCAGC
GCGGCCGATTCCAACCGCATCGAGCCTCACGCGGACGCCCTGTTCGACGG
AGAGAACCGCGGGTTATGGTCGGCGAACGACGTCTCGTATGTAGCCCTAG
TTGCGGACGGAATCATTGCCATCAAGGGGCAATGGAAGAGGGATCGGAAT
TGGTCTCAAAAGCCCCGCGCGCGACTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1268784..1270010-

>mRNA_P-fluviatile_contig22.4875.1 ID=mRNA_P-fluviatile_contig22.4875.1|Name=mRNA_P-fluviatile_contig22.4875.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2454bp|location=Sequence derived from alignment at P-fluviatile_contig22:1268784..1270010- (Porterinema fluviatile SAG_2381)
ATGAACCTTGTGTCGTGGAACTGCGCTTTCCAATTCAAAAGCAGCGTCCC
TGCTGACGACACACCGGAGGCCAGAGACAGGCGGCTGTGGTGCGACACCG
CTCGGCCGACGTGCTACGACGAGCTCGTCGGGAACGGGAGGGCCATCCTG
GCGATTGAGGAGTGGTACCGCAAGGCCGCCGAAAATCCGACCAAATCCTT
CAGCCTCTTCGTGCACGGCGAGTCCGGGACGGGCAAGTCTACCGCAGTCG
CCATGGCCGCGAAGAAGTTCCAGTTTGAGACGGTCGCCACGTACGCCGAC
CGTTCCAGGACACCCGCCCGGCTGGAGGGCATCGTCCGGGAGGCGGGGGT
GTACGGAGCGCGCGGAGTCGTCATCCTGGACGACTTCGAGATTTTCCTTT
CGGAAACGACGTCGCTCCGGGTCCTGTCGAAGCTCCTCCGAAAACTCGTG
CCGGGCACCTCCCCCCAGACCGACAGCACGAGGTCACGCTCCCCGCAGAG
GTGCCTCTTTGTCATTATCTGCAACGCCGAGCACCGGCTCTTCGGGCCTC
TGCAAGACATCTCCACGGTCGTCCGCTTTGAGAGGCTTTCTTCCCAAGAA
TTACACACGATACACAAACGCCTGGCCGCCAGGGTACGGCACCACTCGTA
CGTGCCTCCGATGGTGCTGTACCTGTCATCGGCGTCGGGCTCGGGGACCA
TCACCCAGGGCATCCAACAGCTCCAGCTCCTATACGGAGGCAACGAAAAG
ACCGACTTCGTTTGCAGCCGCCACCGCGGCAAGAAGCGAAGCCTGGGTGG
GACCGTCCTGTGCGACCGGACCCGACCCGCGAACACGAGCGACTGCGTCT
CATTCCTCCGGTCCGACATATACACGGACCGAATTCTGCACCACATGCTG
GACGCCAAGTTCCACCGGGGAAGCGTCGTCGACAGGCTGCTCGGATTTGA
GAAGGGCCAGCTCGACATCGTCGGCAACCAGCTACACGAGGAATACGCAC
GGAGGGCGGCGTCGGTGCAACAGCTACGGAGCGTCGCGGAGTCTCTCAGC
GCGGCCGATTCCAACCGCATCGAGCCTCACGCGGACGCCCTGTTCGACGG
AGAGAACCGCGGGTTATGGTCGGCGAACGACGTCTCGTATGTAGCCCTAG
TTGCGGACGGAATCATTGCCATCAAGGGGCAATGGAAGAGGGATCGGAAT
TGGTCTCAAAAGCCCCGCGCGCGACTCATGAACCTTGTGTCGTGGAACTG
CGCTTTCCAATTCAAAAGCAGCGTCCCTGCTGACGACACACCGGAGGCCA
GAGACAGGCGGCTGTGGTGCGACACCGCTCGGCCGACGTGCTACGACGAG
CTCGTCGGGAACGGGAGGGCCATCCTGGCGATTGAGGAGTGGTACCGCAA
GGCCGCCGAAAATCCGACCAAATCCTTCAGCCTCTTCGTGCACGGCGAGT
CCGGGACGGGCAAGTCTACCGCAGTCGCCATGGCCGCGAAGAAGTTCCAG
TTTGAGACGGTCGCCACGTACGCCGACCGTTCCAGGACACCCGCCCGGCT
GGAGGGCATCGTCCGGGAGGCGGGGGTGTACGGAGCGCGCGGAGTCGTCA
TCCTGGACGACTTCGAGATTTTCCTTTCGGAAACGACGTCGCTCCGGGTC
CTGTCGAAGCTCCTCCGAAAACTCGTGCCGGGCACCTCCCCCCAGACCGA
CAGCACGAGGTCACGCTCCCCGCAGAGGTGCCTCTTTGTCATTATCTGCA
ACGCCGAGCACCGGCTCTTCGGGCCTCTGCAAGACATCTCCACGGTCGTC
CGCTTTGAGAGGCTTTCTTCCCAAGAATTACACACGATACACAAACGCCT
GGCCGCCAGGGTACGGCACCACTCGTACGTGCCTCCGATGGTGCTGTACC
TGTCATCGGCGTCGGGCTCGGGGACCATCACCCAGGGCATCCAACAGCTC
CAGCTCCTATACGGAGGCAACGAAAAGACCGACTTCGTTTGCAGCCGCCA
CCGCGGCAAGAAGCGAAGCCTGGGTGGGACCGTCCTGTGCGACCGGACCC
GACCCGCGAACACGAGCGACTGCGTCTCATTCCTCCGGTCCGACATATAC
ACGGACCGAATTCTGCACCACATGCTGGACGCCAAGTTCCACCGGGGAAG
CGTCGTCGACAGGCTGCTCGGATTTGAGAAGGGCCAGCTCGACATCGTCG
GCAACCAGCTACACGAGGAATACGCACGGAGGGCGGCGTCGGTGCAACAG
CTACGGAGCGTCGCGGAGTCTCTCAGCGCGGCCGATTCCAACCGCATCGA
GCCTCACGCGGACGCCCTGTTCGACGGAGAGAACCGCGGGTTATGGTCGG
CGAACGACGTCTCGTATGTAGCCCTAGTTGCGGACGGAATCATTGCCATC
AAGGGGCAATGGAAGAGGGATCGGAATTGGTCTCAAAAGCCCCGCGCGCG
ACTC
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