mRNA_P-fluviatile_contig22.4870.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4870.1
Unique NamemRNA_P-fluviatile_contig22.4870.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4870.1 vs. uniprot
Match: Q8QND2_ESV1K (EsV-1-150 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND2_ESV1K)

HSP 1 Score: 253 bits (645), Expect = 2.500e-83
Identity = 113/164 (68.90%), Postives = 138/164 (84.15%), Query Frame = 1 
Query:    7 NEKIKNRLKNHWYHYLNLGIESPDNFTPKFVRYITSTSVGGEDLLAYNEAARADHRKTFKTAQSLAKHILHSNCWVDTTTVGAFLKSLDCSVAVVVIDHEIKEPLHMFDDFTRNKDFYICLWLQNSHYQPIQLVYKGKDLHMCIPRESIRIFMRDCYPGHEHRF 498
            N K+ N L+ HW++YL LG+ESPDNFT KFVRYI+S S+G EDLLAYNE ARAD +KTF+ A  LA+H+L S+CWVDT T GAFLKSLDCSVAVVV+DHE+K+PL+M D  TR+KDFYICLWLQ+SHYQP+QLV++G++L  C+ RE IR FM DCYP H+HRF
Sbjct:   36 NHKVTNMLRTHWHNYLELGLESPDNFTAKFVRYISSVSIGEEDLLAYNEVARADKKKTFECADDLAEHVLLSDCWVDTVTFGAFLKSLDCSVAVVVLDHELKQPLNMLDALTRDKDFYICLWLQDSHYQPMQLVHEGRELGACVSREIIRQFMGDCYPSHKHRF 199
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BLAST of mRNA_P-fluviatile_contig22.4870.1 vs. uniprot
Match: D8LPH2_ECTSI (EsV-1-150 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH2_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 7.780e-78
Identity = 104/157 (66.24%), Postives = 130/157 (82.80%), Query Frame = 1 
Query:   28 LKNHWYHYLNLGIESPDNFTPKFVRYITSTSVGGEDLLAYNEAARADHRKTFKTAQSLAKHILHSNCWVDTTTVGAFLKSLDCSVAVVVIDHEIKEPLHMFDDFTRNKDFYICLWLQNSHYQPIQLVYKGKDLHMCIPRESIRIFMRDCYPGHEHRF 498
            L+ HW++YL LG++SPDNFT KFVRY++S S+G EDL+AYNE ARAD++KTF  A  LA+H+  SNCWVDT T GAFLKSLDCSVAVVV+DHE+K+PL+M D  T++K FYICLWLQ+SHYQP+QLV+KG++   C+ RE+IR FM DCYP   HRF
Sbjct:    2 LRTHWHNYLALGLDSPDNFTAKFVRYMSSVSIGDEDLVAYNEVARADNKKTFGCADDLAEHVFLSNCWVDTVTFGAFLKSLDCSVAVVVLDHELKQPLNMLDALTKDKHFYICLWLQDSHYQPMQLVHKGREFGACVTRETIRQFMEDCYPSDRHRF 158
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BLAST of mRNA_P-fluviatile_contig22.4870.1 vs. uniprot
Match: A0A6H5KGP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP6_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.500e-44
Identity = 75/122 (61.48%), Postives = 94/122 (77.05%), Query Frame = 1 
Query:    7 NEKIKNRLKNHWYHYLNLGIESPDNFTPKFVRYITSTSVGGEDLLAYNEAARADHRKTFKTAQSLAKHILHSNCWVDTTTVGAFLKSLDCSVAVVVIDHEIKEPLHMFDDFTRNKDFY-ICL 369
            N+KIK  L+NHW+  L LG+ESPD FTPKFV YITSTS+  +DL AYN  A AD+++ F +   LA H+L++NCW+DT T GAFL+SL CS+AVVVIDHEIKEPL + D+ T+NKD   ICL
Sbjct:   37 NKKIKGMLRNHWHRVLELGVESPDIFTPKFVSYITSTSIDQDDLEAYNSIASADNKEPFDSIPKLAAHVLNTNCWIDTVTFGAFLESLGCSIAVVVIDHEIKEPLCVLDELTQNKDVVPICL 158
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BLAST of mRNA_P-fluviatile_contig22.4870.1 vs. uniprot
Match: A0A6H5JXI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI0_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 9.020e-41
Identity = 66/108 (61.11%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:  163 ADHRKTFKTAQSLAKHILHSNCWVDTTTVGAFLKSLDCSVAVVVIDHEIKEPLHMFDDFTRNKDFYICLWLQNSHYQPIQLVYKGKDLHMCIPRESIRIFMRDCYPGH 486
            A+++ TF +   LA+H+LH+NCW++T T GAFLKSL CS+AVVVIDHEIKE L + D+ T NK+FYICLWL++ H+QPIQLV+KG+D+ +C  R SI  FM DCYP H
Sbjct:  535 ANNKTTFDSVSQLAEHVLHTNCWINTVTFGAFLKSLHCSIAVVVIDHEIKERLCVPDELTHNKEFYICLWLEDDHFQPIQLVHKGQDMALCASRASILTFMNDCYPQH 642
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QND2_ESV1K2.500e-8368.90EsV-1-150 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPH2_ECTSI7.780e-7866.24EsV-1-150 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KGP6_9PHAE2.500e-4461.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXI0_9PHAE9.020e-4161.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1259949..1260449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-150
Ec32 orthologEc-06_005390.1
Exons1
Model size501
Cds size501
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815976.7651367-CDS-P-fluviatile_contig22:1259948..12604491622815976.7651367-CDS-P-fluviatile_contig22:1259948..1260449Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1259949..1260449 -
1693563924.8583388-CDS-P-fluviatile_contig22:1259948..12604491693563924.8583388-CDS-P-fluviatile_contig22:1259948..1260449Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1259949..1260449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4870.1prot_P-fluviatile_contig22.4870.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1259949..1260449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4870.1

>prot_P-fluviatile_contig22.4870.1 ID=prot_P-fluviatile_contig22.4870.1|Name=mRNA_P-fluviatile_contig22.4870.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=167bp
MKNEKIKNRLKNHWYHYLNLGIESPDNFTPKFVRYITSTSVGGEDLLAYN
EAARADHRKTFKTAQSLAKHILHSNCWVDTTTVGAFLKSLDCSVAVVVID
HEIKEPLHMFDDFTRNKDFYICLWLQNSHYQPIQLVYKGKDLHMCIPRES
IRIFMRDCYPGHEHRF*
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mRNA from alignment at P-fluviatile_contig22:1259949..1260449-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4870.1 ID=mRNA_P-fluviatile_contig22.4870.1|Name=mRNA_P-fluviatile_contig22.4870.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=501bp|location=Sequence derived from alignment at P-fluviatile_contig22:1259949..1260449- (Porterinema fluviatile SAG_2381)
ATGAAAAACGAAAAAATAAAAAACAGGCTTAAGAATCATTGGTACCACTA
CCTCAACCTCGGGATCGAGTCACCCGACAATTTCACACCCAAGTTTGTCA
GGTACATCACTTCCACCAGCGTCGGCGGGGAAGACCTCCTTGCGTACAAC
GAGGCCGCTCGCGCAGACCACCGGAAGACTTTCAAGACCGCCCAGTCACT
TGCAAAGCATATCCTGCACTCCAACTGCTGGGTGGACACGACGACTGTCG
GAGCGTTTCTCAAGTCCCTCGACTGTTCCGTCGCGGTGGTCGTCATCGAC
CACGAAATCAAAGAACCGCTTCACATGTTTGATGATTTCACGCGAAACAA
GGACTTTTACATTTGTCTCTGGCTGCAGAACAGCCACTACCAGCCGATAC
AGCTCGTGTACAAGGGAAAGGACCTACACATGTGCATCCCTCGAGAGTCA
ATACGCATTTTCATGCGGGATTGCTACCCCGGCCACGAGCACAGGTTCTG
A
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1259949..1260449-

>mRNA_P-fluviatile_contig22.4870.1 ID=mRNA_P-fluviatile_contig22.4870.1|Name=mRNA_P-fluviatile_contig22.4870.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1002bp|location=Sequence derived from alignment at P-fluviatile_contig22:1259949..1260449- (Porterinema fluviatile SAG_2381)
ATGAAAAACGAAAAAATAAAAAACAGGCTTAAGAATCATTGGTACCACTA
CCTCAACCTCGGGATCGAGTCACCCGACAATTTCACACCCAAGTTTGTCA
GGTACATCACTTCCACCAGCGTCGGCGGGGAAGACCTCCTTGCGTACAAC
GAGGCCGCTCGCGCAGACCACCGGAAGACTTTCAAGACCGCCCAGTCACT
TGCAAAGCATATCCTGCACTCCAACTGCTGGGTGGACACGACGACTGTCG
GAGCGTTTCTCAAGTCCCTCGACTGTTCCGTCGCGGTGGTCGTCATCGAC
CACGAAATCAAAGAACCGCTTCACATGTTTGATGATTTCACGCGAAACAA
GGACTTTTACATTTGTCTCTGGCTGCAGAACAGCCACTACCAGCCGATAC
AGCTCGTGTACAAGGGAAAGGACCTACACATGTGCATCCCTCGAGAGTCA
ATACGCATTTTCATGCGGGATTGCTACCCCGGCCACGAGCACAGGTTCTG
AATGAAAAACGAAAAAATAAAAAACAGGCTTAAGAATCATTGGTACCACT
ACCTCAACCTCGGGATCGAGTCACCCGACAATTTCACACCCAAGTTTGTC
AGGTACATCACTTCCACCAGCGTCGGCGGGGAAGACCTCCTTGCGTACAA
CGAGGCCGCTCGCGCAGACCACCGGAAGACTTTCAAGACCGCCCAGTCAC
TTGCAAAGCATATCCTGCACTCCAACTGCTGGGTGGACACGACGACTGTC
GGAGCGTTTCTCAAGTCCCTCGACTGTTCCGTCGCGGTGGTCGTCATCGA
CCACGAAATCAAAGAACCGCTTCACATGTTTGATGATTTCACGCGAAACA
AGGACTTTTACATTTGTCTCTGGCTGCAGAACAGCCACTACCAGCCGATA
CAGCTCGTGTACAAGGGAAAGGACCTACACATGTGCATCCCTCGAGAGTC
AATACGCATTTTCATGCGGGATTGCTACCCCGGCCACGAGCACAGGTTCT
GA
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