mRNA_P-fluviatile_contig22.4863.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4863.1
Unique NamemRNA_P-fluviatile_contig22.4863.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4863.1 vs. uniprot
Match: D8LPK2_ECTSI (EsV-1-183 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK2_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.000e-53
Identity = 82/147 (55.78%), Postives = 110/147 (74.83%), Query Frame = 1 
Query:    1 MNRRDMFDILQTCIIGESMRACGAGYDAEDALEPYHASEYLENVDEDDVTGTFSSPEHFLEDLCSSNAGKIYETVRDMEKRWDMSSAAVEAAEVPEAVGAVGEVNTSRATSKILWELGKMEALQYIDDMFGEEAASDFLKHGNALFD 441
            M+  +MF++L+TCIIGES RACG GY  EDALE YHASE+ +NVDEDD+TG+F SPEHFLE+LCSSNAG++Y+T+R+M+  W+  S        PE++       +S  T K+LW+LG  EALQYIDD FG+  A +FL++G++LFD
Sbjct:    1 MDTGEMFEVLRTCIIGESFRACGVGYHPEDALEAYHASEFFDNVDEDDITGSFHSPEHFLENLCSSNAGRVYDTIREMDDLWESGS--------PESLS-----RSSAETMKLLWDLGNAEALQYIDDNFGQPVAQEFLEYGSSLFD 134
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BLAST of mRNA_P-fluviatile_contig22.4863.1 vs. uniprot
Match: Q8QNA4_ESV1K (EsV-1-183 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA4_ESV1K)

HSP 1 Score: 166 bits (419), Expect = 4.030e-50
Identity = 79/146 (54.11%), Postives = 105/146 (71.92%), Query Frame = 1 
Query:    1 MNRRDMFDILQTCIIGESMRACGAGYDAEDALEPYHASEYLENVDEDDVTGTFSSPEHFLEDLCSSNAGKIYETVRDMEKRWDMSSAAVEAAEVPEAVGAVGEVNTSRATSKILWELGKMEALQYIDDMFGEEAASDFLKHGNALF 438
            M+  +MF++L+TCIIGES RACG GY  EDALE YHAS++ +NVDEDD+TG+F SPEHFLE+LCSSNAG++Y+T+R+M+  W   S+        E++       +S  T K+LW+LG  EALQYIDD FG++ A  FL +G  LF
Sbjct:    1 MDTAEMFEVLKTCIIGESFRACGVGYHPEDALEAYHASDFFDNVDEDDITGSFHSPEHFLENLCSSNAGRVYDTIREMDNLWKSGSS--------ESLS-----KSSAETMKLLWDLGNAEALQYIDDNFGQQMAQGFLDYGTLLF 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPK2_ECTSI2.000e-5355.78EsV-1-183 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNA4_ESV1K4.030e-5054.11EsV-1-183 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1239431..1239883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-183
Ec32 orthologEc-06_005090.1
Exons1
Model size453
Cds size453
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815976.4487395-CDS-P-fluviatile_contig22:1239430..12398831622815976.4487395-CDS-P-fluviatile_contig22:1239430..1239883Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1239431..1239883 +
1693563924.7050128-CDS-P-fluviatile_contig22:1239430..12398831693563924.7050128-CDS-P-fluviatile_contig22:1239430..1239883Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1239431..1239883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4863.1prot_P-fluviatile_contig22.4863.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1239431..1239883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4863.1

>prot_P-fluviatile_contig22.4863.1 ID=prot_P-fluviatile_contig22.4863.1|Name=mRNA_P-fluviatile_contig22.4863.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=151bp
MNRRDMFDILQTCIIGESMRACGAGYDAEDALEPYHASEYLENVDEDDVT
GTFSSPEHFLEDLCSSNAGKIYETVRDMEKRWDMSSAAVEAAEVPEAVGA
VGEVNTSRATSKILWELGKMEALQYIDDMFGEEAASDFLKHGNALFDFTK
*
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mRNA from alignment at P-fluviatile_contig22:1239431..1239883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4863.1 ID=mRNA_P-fluviatile_contig22.4863.1|Name=mRNA_P-fluviatile_contig22.4863.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=453bp|location=Sequence derived from alignment at P-fluviatile_contig22:1239431..1239883+ (Porterinema fluviatile SAG_2381)
ATGAACCGCCGGGATATGTTCGACATCTTGCAGACTTGTATCATAGGTGA
GAGTATGCGGGCCTGCGGCGCCGGGTACGACGCCGAAGACGCGCTGGAGC
CCTACCACGCGAGCGAGTATCTGGAGAACGTCGACGAGGACGATGTGACG
GGCACGTTTTCCAGCCCGGAGCACTTCTTGGAAGATTTGTGCTCGTCGAA
CGCAGGCAAAATCTACGAAACCGTCCGCGACATGGAAAAGCGATGGGACA
TGTCGTCAGCGGCGGTTGAGGCGGCTGAGGTGCCTGAGGCGGTGGGTGCG
GTGGGTGAGGTCAATACCAGCAGGGCAACCTCCAAGATTCTATGGGAGCT
GGGAAAGATGGAGGCTCTGCAGTATATCGACGACATGTTTGGCGAAGAAG
CCGCGAGCGACTTCTTGAAGCACGGGAACGCCCTGTTCGATTTTACGAAG
TAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1239431..1239883+

>mRNA_P-fluviatile_contig22.4863.1 ID=mRNA_P-fluviatile_contig22.4863.1|Name=mRNA_P-fluviatile_contig22.4863.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=906bp|location=Sequence derived from alignment at P-fluviatile_contig22:1239431..1239883+ (Porterinema fluviatile SAG_2381)
ATGAACCGCCGGGATATGTTCGACATCTTGCAGACTTGTATCATAGGTGA
GAGTATGCGGGCCTGCGGCGCCGGGTACGACGCCGAAGACGCGCTGGAGC
CCTACCACGCGAGCGAGTATCTGGAGAACGTCGACGAGGACGATGTGACG
GGCACGTTTTCCAGCCCGGAGCACTTCTTGGAAGATTTGTGCTCGTCGAA
CGCAGGCAAAATCTACGAAACCGTCCGCGACATGGAAAAGCGATGGGACA
TGTCGTCAGCGGCGGTTGAGGCGGCTGAGGTGCCTGAGGCGGTGGGTGCG
GTGGGTGAGGTCAATACCAGCAGGGCAACCTCCAAGATTCTATGGGAGCT
GGGAAAGATGGAGGCTCTGCAGTATATCGACGACATGTTTGGCGAAGAAG
CCGCGAGCGACTTCTTGAAGCACGGGAACGCCCTGTTCGATTTTACGAAG
TAAATGAACCGCCGGGATATGTTCGACATCTTGCAGACTTGTATCATAGG
TGAGAGTATGCGGGCCTGCGGCGCCGGGTACGACGCCGAAGACGCGCTGG
AGCCCTACCACGCGAGCGAGTATCTGGAGAACGTCGACGAGGACGATGTG
ACGGGCACGTTTTCCAGCCCGGAGCACTTCTTGGAAGATTTGTGCTCGTC
GAACGCAGGCAAAATCTACGAAACCGTCCGCGACATGGAAAAGCGATGGG
ACATGTCGTCAGCGGCGGTTGAGGCGGCTGAGGTGCCTGAGGCGGTGGGT
GCGGTGGGTGAGGTCAATACCAGCAGGGCAACCTCCAAGATTCTATGGGA
GCTGGGAAAGATGGAGGCTCTGCAGTATATCGACGACATGTTTGGCGAAG
AAGCCGCGAGCGACTTCTTGAAGCACGGGAACGCCCTGTTCGATTTTACG
AAGTAA
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