mRNA_P-fluviatile_contig22.4834.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4834.1
Unique NamemRNA_P-fluviatile_contig22.4834.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: A0A6H5JE22_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE22_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.290e-80
Identity = 131/170 (77.06%), Postives = 150/170 (88.24%), Query Frame = 1
Query: 1048 RMKANLFTQDHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDEKMADPGFRNRTEYRRRQQRDGPGAGGAGARGGRKSYAPPRGPTQMPPILRAFEFITHPRVLMVGVPIACVGYMVFGDHASETPGSSVQVDAWLNPRSK 1557
            RMK++LF QDHYRVLGV ++A+  TIREAYLRLVKK+HPDVSK AQSEEQFKA+ASAWEVMGD+SKRALYDE+MADP FR+RTEYR+RQ   G G  GA   GGR+SYAPPRG T+MPPILRAFEF THPRVLMVG+P+ACVGYM+FGDH SE PGSSV+VDAWLNP ++
Sbjct:   47 RMKSDLFAQDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQ---GGGPEGAHRNGGRRSYAPPRGHTRMPPILRAFEFATHPRVLMVGIPLACVGYMIFGDHESEVPGSSVKVDAWLNPSTQ 213          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: D7G772_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G772_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 8.570e-62
Identity = 107/141 (75.89%), Postives = 123/141 (87.23%), Query Frame = 1
Query: 1051 MKANLFTQDHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDEKMADPGFRNRTEYRRRQQRDGPGAGGAGARGGRKSYAPPRGPTQMPPILRAFEFITHPRVLMVGVPIACV 1473
            MK++LF QDHYRVLGV ++A+  TIREAYLRLVKK+HPDVSK AQSE+QFKA+ASAWEVMGD+SKRALYDE+MADP FR+RTEYR+RQ   G   GGA   GGR+SYAPPRG T+MPPILRAFE  THPRVLMVG+P+ACV
Sbjct:    1 MKSDLFAQDHYRVLGVDRNATHETIREAYLRLVKKHHPDVSKGAQSEDQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQ---GGAPGGAQRTGGRRSYAPPRGHTRMPPILRAFELATHPRVLMVGIPLACV 138          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: UPI001C1F86E7 (DnaJ domain-containing protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=UPI001C1F86E7)

HSP 1 Score: 79.3 bits (194), Expect = 3.620e-14
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDEKMA---DPGFRNRTEY 1302
            D+Y ++GV       TI+ AY RL KKYHPDVSK   +EE+FK +A AWE++GD  +RA YDE  A   DP F+  T++
Sbjct:    5 DYYAIMGVKPTDDMKTIKTAYRRLAKKYHPDVSKEPDAEERFKEIAQAWEILGDEQRRAEYDELWAHRNDPKFKQFTQH 83          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: C0B199_9GAMM (Curved DNA-binding protein n=1 Tax=Proteus penneri ATCC 35198 TaxID=471881 RepID=C0B199_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 4.310e-14
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDEKMA---DPGFRNRTE 1299
            D+Y ++GV       TI+ AY RL KKYHPDVSK   +EE+FK +A AWE++GD  +RA YDE  A   DP FR  T+
Sbjct:    5 DYYAIMGVKPTDDTKTIKTAYRRLAKKYHPDVSKEPNAEERFKEIAQAWEILGDEQRRAEYDELWAHRNDPKFRQFTQ 82          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: UPI0019B5AD3E (DnaJ domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019B5AD3E)

HSP 1 Score: 76.3 bits (186), Expect = 2.190e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYD 1260
            D+Y+ LGV + AS   IR+AY RL +KYHPDVSK   +EEQFKAV  A+EV+ D+ KRA YD
Sbjct:    5 DYYQTLGVERSASTDDIRKAYRRLARKYHPDVSKEKNAEEQFKAVGEAYEVLKDKEKRAAYD 66          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: A0A2H5Z7L3_9BACT (Chaperone protein DnaJ n=5 Tax=Bacteria TaxID=2 RepID=A0A2H5Z7L3_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 3.290e-13
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDEKMADPGFRNRTEYRRRQQRDGPGAGGAGARGGRKSYA 1374
            D+Y++LGV +DA Q TIR+AYLRL +KYHPDV+KS ++EE+FK +  A+EV+ D  KRA YD   AD        + R QQ        AGA+GG   +A
Sbjct:    5 DYYKILGVPRDADQETIRKAYLRLARKYHPDVNKSPEAEEKFKEINEAYEVLRDPEKRAKYDRFGAD--------WERYQQ-------AAGAQGGATDFA 89          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: UPI000375C364 (DnaJ domain-containing protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans TaxID=243063 RepID=UPI000375C364)

HSP 1 Score: 80.1 bits (196), Expect = 9.910e-13
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDE 1263
            D+Y++LGV++DASQ TI++AY +L +KYHPDVSK A +EE+FK +  A+EV+GD  KR  YD+
Sbjct:    5 DYYKLLGVSRDASQDTIKKAYRKLARKYHPDVSKEADAEERFKEINEAYEVLGDAGKRRAYDD 67          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: A0A1Z1SXY9_PROMI (Curved DNA-binding protein n=32 Tax=Enterobacterales TaxID=91347 RepID=A0A1Z1SXY9_PROMI)

HSP 1 Score: 79.3 bits (194), Expect = 1.880e-12
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDEKMA---DPGFRNRTEY 1302
            D+Y ++GV       TI+ AY RL KKYHPDVSK   +EE+FK +A AWE++GD  +RA YDE  A   DP F+  T++
Sbjct:    5 DYYAIMGVKPTDDMKTIKTAYRRLAKKYHPDVSKEPDAEERFKEIAQAWEILGDEQRRAEYDELWAHRNDPKFKQFTQH 83          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: UPI001428C192 (DnaJ domain-containing protein n=1 Tax=Duganella phyllosphaerae TaxID=762836 RepID=UPI001428C192)

HSP 1 Score: 73.6 bits (179), Expect = 2.230e-12
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDEKMADPGFRNRTEYRRRQQRDGPGAGGAGARGG 1359
            D+Y+ LGVA+ AS+  I++AY +LV+KYHPDVSK A ++++ + +  A+ V+GD  KRA YD+      FR   E+R       PG GG G R G
Sbjct:    5 DYYQTLGVAKTASEDEIKKAYRKLVRKYHPDVSKEADAQKKTQELNEAYGVLGDAEKRAAYDDLGRGQQFRAGQEFR-----PPPGWGGGGGRAG 94          
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Match: UPI00036B91C9 (DnaJ domain-containing protein n=1 Tax=Pseudomonas thermotolerans TaxID=157784 RepID=UPI00036B91C9)

HSP 1 Score: 79.0 bits (193), Expect = 2.560e-12
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 1075 DHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQFKAVASAWEVMGDRSKRALYDE 1263
            D+Y VLGVA DA   TI+ AY RL +KYHPDV+K A +EE FK +A A+EV+GD  KRA YDE
Sbjct:    5 DYYAVLGVAPDADAKTIKTAYRRLARKYHPDVNKEAGAEEHFKEIAEAYEVLGDPQKRAEYDE 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE22_9PHAE2.290e-8077.06J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D7G772_ECTSI8.570e-6275.89Heat shock protein 40 like protein/ DnaJ domain co... [more]
UPI001C1F86E73.620e-1449.37DnaJ domain-containing protein n=1 Tax=Pseudomonas... [more]
C0B199_9GAMM4.310e-1451.28Curved DNA-binding protein n=1 Tax=Proteus penneri... [more]
UPI0019B5AD3E2.190e-1359.68DnaJ domain-containing protein n=1 Tax=Proteobacte... [more]
A0A2H5Z7L3_9BACT3.290e-1348.00Chaperone protein DnaJ n=5 Tax=Bacteria TaxID=2 Re... [more]
UPI000375C3649.910e-1357.14DnaJ domain-containing protein n=1 Tax=Thioalkaliv... [more]
A0A1Z1SXY9_PROMI1.880e-1249.37Curved DNA-binding protein n=32 Tax=Enterobacteral... [more]
UPI001428C1922.230e-1244.21DnaJ domain-containing protein n=1 Tax=Duganella p... [more]
UPI00036B91C92.560e-1261.90DnaJ domain-containing protein n=1 Tax=Pseudomonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1091389..1094971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue2.4e-53
Seed eggNOG ortholog2880.D7G772
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1842
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4834.1prot_P-fluviatile_contig22.4834.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1092439..1094734 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815974.7988148-UTR-P-fluviatile_contig22:1091388..10924381622815974.7988148-UTR-P-fluviatile_contig22:1091388..1092438Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1091389..1092438 +
1693563914.9744327-UTR-P-fluviatile_contig22:1091388..10924381693563914.9744327-UTR-P-fluviatile_contig22:1091388..1092438Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1091389..1092438 +
1622815974.8532677-UTR-P-fluviatile_contig22:1094734..10949711622815974.8532677-UTR-P-fluviatile_contig22:1094734..1094971Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1094735..1094971 +
1693563915.0332437-UTR-P-fluviatile_contig22:1094734..10949711693563915.0332437-UTR-P-fluviatile_contig22:1094734..1094971Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1094735..1094971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815974.8109465-CDS-P-fluviatile_contig22:1092438..10926121622815974.8109465-CDS-P-fluviatile_contig22:1092438..1092612Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1092439..1092612 +
1693563914.9848378-CDS-P-fluviatile_contig22:1092438..10926121693563914.9848378-CDS-P-fluviatile_contig22:1092438..1092612Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1092439..1092612 +
1622815974.8209639-CDS-P-fluviatile_contig22:1093178..10933321622815974.8209639-CDS-P-fluviatile_contig22:1093178..1093332Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1093179..1093332 +
1693563914.9959738-CDS-P-fluviatile_contig22:1093178..10933321693563914.9959738-CDS-P-fluviatile_contig22:1093178..1093332Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1093179..1093332 +
1622815974.8317008-CDS-P-fluviatile_contig22:1093705..10938001622815974.8317008-CDS-P-fluviatile_contig22:1093705..1093800Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1093706..1093800 +
1693563915.0135-CDS-P-fluviatile_contig22:1093705..10938001693563915.0135-CDS-P-fluviatile_contig22:1093705..1093800Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1093706..1093800 +
1622815974.8412106-CDS-P-fluviatile_contig22:1094602..10947341622815974.8412106-CDS-P-fluviatile_contig22:1094602..1094734Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1094603..1094734 +
1693563915.0238476-CDS-P-fluviatile_contig22:1094602..10947341693563915.0238476-CDS-P-fluviatile_contig22:1094602..1094734Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1094603..1094734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4834.1

>prot_P-fluviatile_contig22.4834.1 ID=prot_P-fluviatile_contig22.4834.1|Name=mRNA_P-fluviatile_contig22.4834.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=185bp
MKANLFTQDHYRVLGVAQDASQSTIREAYLRLVKKYHPDVSKSAQSEEQF
KAVASAWEVMGDRSKRALYDEKMADPGFRNRTEYRRRQQRDGPGAGGAGA
RGGRKSYAPPRGPTQMPPILRAFEFITHPRVLMVGVPIACVGYMVFGDHA
SETPGSSVQVDAWLNPRSKPLPPFFQLERAQWGW*
back to top

mRNA from alignment at P-fluviatile_contig22:1091389..1094971+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4834.1 ID=mRNA_P-fluviatile_contig22.4834.1|Name=mRNA_P-fluviatile_contig22.4834.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3583bp|location=Sequence derived from alignment at P-fluviatile_contig22:1091389..1094971+ (Porterinema fluviatile SAG_2381)
CTCACCTTCGCCGAATCTGATCCACACGAACATAGTGGTCTCCCACCAGA GCTCCCTCGCGGGAGAGCGTGCGTCGAATGATAATGTTGTGCAGACTATC TCGTTTCTCTTCGCAGAACACGCACACCCAACCGCGGGCGGTGTGAGATT GACAGTCTCGCATGCGTCACAGGCCTACCGCAACTACAAATCCCAAAACA AAAGGGTTCGTCATTTGTTATCCCCTCTCTGGACGGGCTTGTGCACCTCT ACTTGCGGGAACTGCAGGCACAGCACGTATTCAGAGCTACTCAGGTGAGT GCCCGCGGAATGCATTATTTTAGTATTCCGTGCTCTACTCCTGCGAGGCT GGAGTTGGGAGTCTAACTTATTCTTCCGCGTCTCGGACACAGTTCGCTCT CCGCTGTCGTAGAGCTTTATGTACCCTGGCCACCTTAATCCACTCATTCG CATCGATTCTTGCCGTTGAGGCTTTTGTTGTTGAGAGGCCATGCCGGAGT CTCGCCCCTCTCTGTTTAGCTTGAAAGTTATCCTCAACACGGCACCGTCG TGCAAGCAGCCACCAGGATGTGGCGACCTGAGTCACACACAGACATCGTC ACCCCTCCCTCTCTGGCGCTTTCTGTTACGATAGTGCTCCCGGTTCTACT CAAGACCAGGCACACAGCCTGCCGACTTGGTGTCCTGTTTTCCCATCATA TTTCAGGCTCTCGCCCGCTGAGTTGATCTGAACGCCCGATTCATGTCCCT GATGACCGGCGATCATGTCGATTGGAACAACGCTGTCCAGCTTGTGTGCG ATCAACAGCAGCTGTGCCTGGGTACCCGTAGGGTTTCACGTGTTTTCGGA GCGTTCTTGAGCCATGGAAGTGATGGCATATATATATATATATATCTCTC GTGCGCTTCCAATCTGAACGAGCGTTCCTTGTGTCGGAGCTTCGATTCAG ATTTATCACTCCATTCTCGCCGTTGTCGATTACAACCACCTGTAGCCGTC TCTCGCGAGAGCGGCAGAGAGGGGCAGCAGGTTCCAGGGCGTTGGCAAGG ATGAAGGCCAACCTGTTCACGCAAGACCACTACCGAGTCCTCGGCGTTGC ACAAGACGCTAGCCAGAGCACCATACGAGAGGCTTACTTGCGGCTGGTGA AGAAATATCACCCAGATGTCAGCAAGAGCGCCCAGAGCGAGGAACAGTTC AAGGCAGTCGCGTCGGCATGGGAGGCGAGTTGCTGCTTGTTTCACCGTGA CTCTATGTACATGGTAGAGCATCGTGCCACACCCCTTCGAGGCAATGTTT GAGGCTCGAAATTCCGCAGGAGGATGATTGCCTAAGTCCAGAAGGAAGGC TTAGGAAAGATCTCGCCTAGAGCTTCCCAACACCCTCTTGTGCTGCGCTG CTGTGTGCTCGGTAGTGCAGCAACAGAGCCGCTCAAAATCGGCCTATGGG GCTCTAATTTACACAGCCGTGTATTGCACGAGAGACCGGGGCATATGCTC CACGGGGGCGAACATCGAAAAGCGTAACACTGCGGCTCGGGGGTTGCGTC TGTCTCCTATGTCGGATGTTTTCCACGCACCGGGGGTGCTCAGAGAATCA TGATTTCGCAAAATCGTGAAGCGGCATCGTGCGGATCGAGGCGGCCGCTG TACGCCGTGAACTAACAGCGGCCAGTCGTGCCACGTCTCGCACGCAAGGT TGCCACACCAGCTACTCTGCATACGTCCATTTCTTTATGAGAGAAAGGCT TCACATGATGCACGCAACGCACACATGCCCACACATGCAGGTGATGGGGG ACAGATCGAAGCGTGCGCTGTACGACGAAAAGATGGCGGATCCGGGATTC CGAAATCGGACAGAGTACAGACGACGGCAGCAGCGAGACGGGCCGGGTGC AGGGGGGGCAGGGGCGCGTGGGGGACGAAAGTCGTACGCTCCACGTGAGT AAGGCCCATGGGGCGAACATCGAACACGCTGTGCAGGCACTCTTTGTTCT GTGTTCAAGCAGTTTTTAGTGTGGGCGGGGTTGGGTGGGGGACGGGAGAG CTTCGGGGGGGAAATCGCGGTGTGTGCACAGGTGTTGACCGGCGCAGTCG CTCTGCAGTCATGCCGAGCATACATTTCCTTGCACGTCATCAGAGCTATA GTTTCCTTTGATTCCATGTCAGACCTGGTGAATTTGTTCTTTGTTGGTAT TTGTCGGCCGATCTTCCTCCGAAGCAAAGAAAATAAAGTTCGGGTGCAGT CGCTCTTTGATGAGACGCTTCATCACGCGCCGCCCGTCACCCGAACCCTG CCACACGGCCTTTCCAGCACGAGGCCCGACCCAGATGCCGCCCATCCTGC GGGCGTTTGAGTTCATCACGCACCCCCGGGTGCTCATGGTCGGGGTGCCT ATCGCGTGCGTGGTGAGTGCCTGTTGAGGTGTGCATGATGGGGTGGGTCC GTCGCGTGCTTCATCAGTGAGTGCCCGTCGTGTGCGCGACCAGAGCCTTG AATCGAGCGGTACGACTAGCTATTCGTTCCAATGAGCTCCTGTATGACAA ACCCGCGCTGGCTGCCGCTGTGCCCGCTGCGGGATAGCACTCTTGCAGCG CGACCAAGCCTGCAAAGTCGGAACCAGGAAAATATGTTGCGTTCCTCAAC ACCCATCTTTTCGGAACTGAGCGCGAAGGCGTATCCGAAGATGTCTAGGA TGATCGATATGCAGGAAAGTGATCAACTAGGGTTCTTGGGACGTAAAGAC GCCGCCCATCCCTCCGCACCAGGCGACGGCCCTCGAGCGATGGCGAGGTG GTCGCTCATGTGTGTGTGCCTCTGCGGCCACCGCGGGTAGCATTTTCTTG TCAAGTTTTCATGTCTCTGTGGTGGAGCTGGATGCAGAGAAGGTTCTGCG AACTACGACGCGGAATAAAAATAATAGATAAATAAATGAATCGCGGGAGC TTTGTTATCACTGTCTTCCAGAAAAATCACCCGTGCGAGGGTCTCTGATC CAAACGCAGTACGTTTCACCGCCCCACCGGCCAAGGTGGTAGCTTTCCGA TCCGATCCATTTGATTATCGGCGGAAGCAATGCTGTTGGTCGCGCCTGTG CTACGATCTTACGACAGCCAGCCAACCTGCCTGTCTGTCTGTCTGCCGGC CTGCCTGCCAACCTGACCCGCTGCACGCACGTCGCGCGGAAACGCTTCCG TTCCATGAACACAGGGGTACATGGTTTTTGGCGACCACGCTTCGGAAACA CCGGGCAGCTCCGTACAGGTCGATGCATGGCTCAATCCCAGGTCAAAACC CTTACCGCCCTTTTTTCAACTGGAGAGAGCGCAATGGGGTTGGTAGCATG CGTCTGTCACTACGGCTTAGCGGTCATTTTTCGCGTTTCGCATCCCAGCC GTAGCGCCGCCAATATCCATGGTGGACATTCATCAAGCTCTGCGAGGGTT GACTTCAAAATCGTGCTCCGAGGAAGGGGGGAATGCCAATGCCAAAAGAG AGGGCAAAGTTTGAAAGATCGCATGCAGAGCGCTCCGGAAACTTATGTGC TGGAGCTGTTGTGGATCGAAAATTGGCTTTAGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig22:1091389..1094971+

>mRNA_P-fluviatile_contig22.4834.1 ID=mRNA_P-fluviatile_contig22.4834.1|Name=mRNA_P-fluviatile_contig22.4834.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1110bp|location=Sequence derived from alignment at P-fluviatile_contig22:1091389..1094971+ (Porterinema fluviatile SAG_2381)
ATGAAGGCCAACCTGTTCACGCAAGACCACTACCGAGTCCTCGGCGTTGC
ACAAGACGCTAGCCAGAGCACCATACGAGAGGCTTACTTGCGGCTGGTGA
AGAAATATCACCCAGATGTCAGCAAGAGCGCCCAGAGCGAGGAACAGTTC
AAGGCAGTCGCGTCGGCATGGGAGATGAAGGCCAACCTGTTCACGCAAGA
CCACTACCGAGTCCTCGGCGTTGCACAAGACGCTAGCCAGAGCACCATAC
GAGAGGCTTACTTGCGGCTGGTGAAGAAATATCACCCAGATGTCAGCAAG
AGCGCCCAGAGCGAGGAACAGTTCAAGGCAGTCGCGTCGGCATGGGAGGT
GATGGGGGACAGATCGAAGCGTGCGCTGTACGACGAAAAGATGGCGGATC
CGGGATTCCGAAATCGGACAGAGTACAGACGACGGCAGCAGCGAGACGGG
CCGGGTGCAGGGGGGGCAGGGGCGCGTGGGGGACGAAAGTCGTACGCTCC
ACGTGATGGGGGACAGATCGAAGCGTGCGCTGTACGACGAAAAGATGGCG
GATCCGGGATTCCGAAATCGGACAGAGTACAGACGACGGCAGCAGCGAGA
CGGGCCGGGTGCAGGGGGGGCAGGGGCGCGTGGGGGACGAAAGTCGTACG
CTCCACCACGAGGCCCGACCCAGATGCCGCCCATCCTGCGGGCGTTTGAG
TTCATCACGCACCCCCGGGTGCTCATGGTCGGGGTGCCTATCGCGTGCGT
GCACGAGGCCCGACCCAGATGCCGCCCATCCTGCGGGCGTTTGAGTTCAT
CACGCACCCCCGGGTGCTCATGGTCGGGGTGCCTATCGCGTGCGTGGGGT
ACATGGTTTTTGGCGACCACGCTTCGGAAACACCGGGCAGCTCCGTACAG
GTCGATGCATGGCTCAATCCCAGGTCAAAACCCTTACCGCCCTTTTTTCA
ACTGGAGAGAGCGCAATGGGGTTGGTAGGGGTACATGGTTTTTGGCGACC
ACGCTTCGGAAACACCGGGCAGCTCCGTACAGGTCGATGCATGGCTCAAT
CCCAGGTCAAAACCCTTACCGCCCTTTTTTCAACTGGAGAGAGCGCAATG
GGGTTGGTAG
back to top