mRNA_P-fluviatile_contig22.4804.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4804.1
Unique NamemRNA_P-fluviatile_contig22.4804.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.380e-49
Identity = 119/272 (43.75%), Postives = 162/272 (59.56%), Query Frame = 1
Query:  916 TRCGVTLMFGGHEARAGTSRFLSQATFLVYKLTMALFFMSLAIYWREAAGESIXXXXXXXXXXXXXXXXXXXXTASAYLILRAIGKRAATASSGAALEEGE----GPRASEMADVGGTESPVPLALRRLQLVTWNIACNVSLLVVGLFWYADYDRDRPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWKE-RMLYEVLDWDNKPLVACIYAIVSILFLAPLFSLIHLFICSRRERL-HSRLQEKLEAS 1713
            TR G T+       R GTSRFL Q  F++YKL +A++F+  AI+WR A  +                        SA+L  RAI   A T +SG  + +G+     P +S  +D  G+  PVP ALR LQL  W+ AC VSL+VV +FW A YD D+ +T+VD  AH  +A IML+DQFLVAD F+LR+++F Q +GVIYI FN+ WYY    + R++Y +LDW++  L ACIYA  +IL  APLF L+H  I   RER+ H+RL    +A+
Sbjct:    3 TRHGGTVPLDDETPRIGTSRFLPQGMFVLYKLGLAVYFLYWAIFWR-AVKDYNTGRFLTHWTWYATTTYFVVSALSAFLCWRAI---AVTVASGP-VRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDK-LTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVYHNRLARSSKAA 268          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.850e-31
Identity = 75/176 (42.61%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 1249 GGTESPVPLALRRLQLVTWNIACNVSLLVVGLFWYADYDRD--RPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWK-ERMLYE-VLDWDNKPLVACIYAIVSILFLAPLFSLIHLFICSRRERLHSRLQEK----LEASRRIITLG*FLHGL 1752
            G  + PVP  LR LQLV WNIAC  SLLV  ++   DY R   + V + DV AHG +A  ML+DQ L+AD ++L H+IF+Q+YG++Y+ F+++W+Y G + E+ LYE  LDWD   L AC+   V++  L P+  L+HL +   RE L+ R+++K    L+    + T G   H L
Sbjct:   87 GNVQPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIATLKREHSLATEGASRHSL 262          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.840e-31
Identity = 70/155 (45.16%), Postives = 100/155 (64.52%), Query Frame = 1
Query: 1249 GGTESPVPLALRRLQLVTWNIACNVSLLVVGLFWYADYDRD--RPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWK-ERMLYE-VLDWDNKPLVACIYAIVSILFLAPLFSLIHLFICSRRERLHSRLQEK 1701
            G  + PVP  LR LQLV WNIAC  SLLV  ++   DY R   +   + DV AHG +A  ML+DQ L+AD F+L H+IF+Q+YG++Y+ F++IW+Y G + E+ LYE  LDW    L AC+   V++  L P+  L+HL +   RE L+ R+++K
Sbjct:    5 GNAQPPVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGTKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALYGRVRDK 159          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.710e-28
Identity = 72/164 (43.90%), Postives = 97/164 (59.15%), Query Frame = 1
Query: 1228 ASEMADVGGTESPVPLALRRLQLVTWNIACNVSLLVVGLFWYADYDRDRPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWKE-RMLYEVLDWDNKPLVACIYAIVSILFLAPLFSLIHLFICSRRERL-HSRLQEKLEAS 1713
            AS   D  G+  PVP  LR LQLV W+ AC  SL+VV +FW A                      +L+DQFLVAD F+LR+I+F Q +GVIY+ FN+ WYY    + R++Y +LDW++  L ACIYA  +IL  APLF L+HL +   RE + H+RL    +A+
Sbjct:    2 ASRPYDRTGSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGA----------------------LLLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVYHNRLARTSKAA 143          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.680e-21
Identity = 80/256 (31.25%), Postives = 119/256 (46.48%), Query Frame = 1
Query:  958 RAGTSRFLSQATFLVYKLTMALFFMSLAIYWREAAGESIXXXXXXXXXXXXXXXXXXXXTASAYLILRAIGKRAATASSGAALEEGEGPRASEMADVGGTESPVP-------------LALRRLQLVTWNIACNVSLLVVGLFWYADYDRDRPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWK-ERMLYEVLDWDNKPLVACIYAIVSILFLAPLFSLIHLFICSRRERLH 1683
            RA TSRFLSQ +FL YK+   ++F+    +W                            TA+AY  L +                   P AS+   V GT +  P              AL   Q+ +WN+AC  SL++V +FW A +D   P+TS DV AH  IAP+M IDQ LVA  F  + ++ S ++ ++Y+ FNI+++ T  + ER++Y  +DW      +  +A V    L PL  LIH  +   RE ++
Sbjct:   20 RAVTSRFLSQRSFLCYKVIATIYFVFWCYFWPFGEDIDDAHKFVTYWGWYMAAIYFLVSTATAYSFLGS-------------------PMASD-GPVRGTHAVAPHRGNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDN-TPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFRLREYIY 254          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.000e-19
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1
Query: 1276 ALRRLQLVTWNIACNVSLLVVGLFWYADYDRDRPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWK-ERMLYEVLDWDNKPLVACIYAIVSILFLAPLFSLIHLFICSRRERLH 1683
            AL   Q+ +WN+AC  SL++V +FW A +D   P+TS DV AH  IAPIM IDQ LVA  F  + ++ S  + ++Y+ FNII++ T  + ER++Y  +DW      +  +A V    L PL  LIH  +   RE ++
Sbjct:   30 ALLGFQVFSWNVACVGSLVIVTVFWVALFDN-TPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFRLREYIY 165          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: A0A8J5AY82_9DIPT (Uncharacterized protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5AY82_9DIPT)

HSP 1 Score: 70.9 bits (172), Expect = 2.160e-9
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 1306 NIACNVSLLVVGLFWYADYDRDRPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWKERM----LYEVLDWDNKPLVACIYAIVSILFLAPLFSLI 1647
            NI  NVS+++  ++W   +    PV++ +V+ H   + +M +D  ++A   RL H I   + G+ Y+IF+II+YY G K +     +Y VLDW +      +  +V  L L+ +  L+
Sbjct:  126 NIILNVSIVITVIYWSILHTDSMPVSATNVMTHACNSALMFVDMLIMAYPLRLYHGIQPILLGMFYVIFSIIYYYAGGKNKFDQPYIYNVLDWSSSDPKKNVVTVVGTLVLSMIIHLV 243          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: UPI000C1FEEA5 (protein rolling stone-like isoform X1 n=2 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C1FEEA5)

HSP 1 Score: 65.1 bits (157), Expect = 1.510e-7
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 1276 ALRRLQLVTWNIACNVSLLVVGLFWYADYDRDR-PVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWKER----MLYEVLDWDN--KPLVACIYAIVSILFLAPLFSLIHLFICSRRERLHSRLQEK 1701
            A  R+  V   IA +V+  +  L+W   YD  +  V + ++  HG  + +MLID F+VA    L    +S ++G++YI+F+II++  G   R     +Y VLDW    K  + C+  +V ++ L      I LF    R  +  +L++K
Sbjct:  120 ATYRMYWVMNIIATDVAFGITVLYWALLYDETKMEVDAQNIFVHGTNSLVMLIDLFVVAHPLYLVQCYWSVLFGIVYIVFSIIYHLCGGTSRNEEPFIYPVLDWGKPGKTTIVCVLVLVFLIVLHIFSCCIQLF----RSHIDKKLRKK 264          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: UPI000A2A46E3 (protein rolling stone n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A46E3)

HSP 1 Score: 63.9 bits (154), Expect = 3.820e-7
Identity = 30/115 (26.09%), Postives = 61/115 (53.04%), Query Frame = 1
Query: 1303 WNIACNVSLLVVGLFWYADYDRDRPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTGWKERM----LYEVLDWDNKPLVACIYAIVSILFLAPL 1635
            +N+A N++ LV  ++W  DY   + V   +  AH   + +++ID  +    FR+ H+I+  +YG++Y  F +I++  G         +Y +LD++N   +A + A + +    P+
Sbjct:  148 YNVAANIAFLVTAMYWAFDYVPGQYVDGSNANAHAVNSVLVIIDVMVCNVPFRIFHLIYPLIYGIVYTSFTVIYWAAGGTNHKGKSYIYAILDYENNAGLAFLMAAMFVFLAVPI 262          
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Match: A0A0N1IPM0_PAPMA (Protein rolling stone n=9 Tax=Papilio TaxID=7145 RepID=A0A0N1IPM0_PAPMA)

HSP 1 Score: 61.6 bits (148), Expect = 1.700e-6
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 1
Query: 1297 VTWNIACNVSLLVVGLFW---------YADYDRDRPVTSVDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTG----WKERMLYEVLDWDNKPLVACIYAIVSILFLA 1629
            V +NI   V+ L+   +W         +       P  ++DV+ HG  + +ML +  L A   RLRH++    +G++Y+IF I++Y  G    W    +Y V+DW +KP    + A ++ LFLA
Sbjct:  111 VLYNITIPVAFLITVFYWSILNTVLRTFKKKVNYAPNPTLDVMLHGVNSLVMLTELILSAHPSRLRHVMQPLYFGIVYLIFTIVYYDAGGLDPWGHVFIYPVIDW-SKPEQTLVVASLTGLFLA 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JSI9_9PHAE6.380e-4943.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVA0_9PHAE3.850e-3142.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX10_ECTSI4.840e-3145.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G734_ECTSI1.710e-2843.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMZ5_9PHAE1.680e-2131.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G735_ECTSI6.000e-1940.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J5AY82_9DIPT2.160e-930.51Uncharacterized protein n=2 Tax=Bradysia TaxID=355... [more]
UPI000C1FEEA51.510e-730.20protein rolling stone-like isoform X1 n=2 Tax=Onth... [more]
UPI000A2A46E33.820e-726.09protein rolling stone n=1 Tax=Exaiptasia diaphana ... [more]
A0A0N1IPM0_PAPMA1.700e-630.65Protein rolling stone n=9 Tax=Papilio TaxID=7145 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:863344..868989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue6.3e-07
Seed eggNOG ortholog10224.XP_002731894.1
GOsGO:0000768,GO:0005575,GO:0006949,GO:0007520,GO:0008150,GO:0009653,GO:0009987,GO:0014902,GO:0016020,GO:0030154,GO:0032502,GO:0042692,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0061061
EggNOG free text desc.Protein rolling stone-like
EggNOG OGs2BZ8C@1,2S8CX@2759,3A92Y@33154,3BTZA@33208,3DATV@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons6
Model size3112
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4804.1prot_P-fluviatile_contig22.4804.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 864719..868053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815972.0267603-UTR-P-fluviatile_contig22:863343..8647181622815972.0267603-UTR-P-fluviatile_contig22:863343..864718Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 863344..864718 -
1693563908.6050537-UTR-P-fluviatile_contig22:863343..8647181693563908.6050537-UTR-P-fluviatile_contig22:863343..864718Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 863344..864718 -
1622815972.1006174-UTR-P-fluviatile_contig22:868053..8689891622815972.1006174-UTR-P-fluviatile_contig22:868053..868989Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 868054..868989 -
1693563908.6922104-UTR-P-fluviatile_contig22:868053..8689891693563908.6922104-UTR-P-fluviatile_contig22:868053..868989Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 868054..868989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815972.0369484-CDS-P-fluviatile_contig22:864718..8647911622815972.0369484-CDS-P-fluviatile_contig22:864718..864791Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 864719..864791 -
1693563908.6192298-CDS-P-fluviatile_contig22:864718..8647911693563908.6192298-CDS-P-fluviatile_contig22:864718..864791Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 864719..864791 -
1622815972.0465493-CDS-P-fluviatile_contig22:865800..8660391622815972.0465493-CDS-P-fluviatile_contig22:865800..866039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 865801..866039 -
1693563908.6289656-CDS-P-fluviatile_contig22:865800..8660391693563908.6289656-CDS-P-fluviatile_contig22:865800..866039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 865801..866039 -
1622815972.056462-CDS-P-fluviatile_contig22:866693..8667591622815972.056462-CDS-P-fluviatile_contig22:866693..866759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 866694..866759 -
1693563908.6422608-CDS-P-fluviatile_contig22:866693..8667591693563908.6422608-CDS-P-fluviatile_contig22:866693..866759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 866694..866759 -
1622815972.0680413-CDS-P-fluviatile_contig22:867059..8671671622815972.0680413-CDS-P-fluviatile_contig22:867059..867167Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 867060..867167 -
1693563908.6604555-CDS-P-fluviatile_contig22:867059..8671671693563908.6604555-CDS-P-fluviatile_contig22:867059..867167Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 867060..867167 -
1622815972.079747-CDS-P-fluviatile_contig22:867218..8673821622815972.079747-CDS-P-fluviatile_contig22:867218..867382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 867219..867382 -
1693563908.671833-CDS-P-fluviatile_contig22:867218..8673821693563908.671833-CDS-P-fluviatile_contig22:867218..867382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 867219..867382 -
1622815972.0897565-CDS-P-fluviatile_contig22:867902..8680531622815972.0897565-CDS-P-fluviatile_contig22:867902..868053Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 867903..868053 -
1693563908.682192-CDS-P-fluviatile_contig22:867902..8680531693563908.682192-CDS-P-fluviatile_contig22:867902..868053Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 867903..868053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4804.1

>prot_P-fluviatile_contig22.4804.1 ID=prot_P-fluviatile_contig22.4804.1|Name=mRNA_P-fluviatile_contig22.4804.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=267bp
MFGGHEARAGTSRFLSQATFLVYKLTMALFFMSLAIYWREAAGESIVLAK
LTHQTWYITMAYFFVSTASAYLILRAIGKRAATASSGAALEEGEGPRASE
MADVGGTESPVPLALRRLQLVTWNIACNVSLLVVGLFWYADYDRDRPVTS
VDVLAHGAIAPIMLIDQFLVADHFRLRHIIFSQVYGVIYIIFNIIWYYTG
WKERMLYEVLDWDNKPLVACIYAIVSILFLAPLFSLIHLFICSRRERLHS
RLQEKLEASRRIITLG*
back to top

mRNA from alignment at P-fluviatile_contig22:863344..868989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4804.1 ID=mRNA_P-fluviatile_contig22.4804.1|Name=mRNA_P-fluviatile_contig22.4804.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5646bp|location=Sequence derived from alignment at P-fluviatile_contig22:863344..868989- (Porterinema fluviatile SAG_2381)
CCGAGGTTCATCCATCAGCTGATGGTGCTTCGTCCTGAATGCAGTCGTTG GAAGCAGTCGGAGTTCCCTGACTTCCGTATCGTCCGGGGAAATCTCCACC GTCTCCGTACACCTTGAGTCGTTCTCCGTTTCCTCGACGAACCAGTCGCC GCGGTGCCTGAAAGCATTCCATCGCCTGTCGCCGACCTCAACGTGCCACC GGGGTGGGACCGTAAATTTCACACGCACTAAAGCGGGCACACGCACCGTC CAGAAGTGTGTAATATACATGGAGCAGATTTCGTGTGTTAAAAGAACCTT GATGCCCACTGATATCACCCACACTTCTCAATCCGCACTAAGGAGGACCC CGCACTGAACTACTCCGTAGTATAAAAGAGCTCGCACACAAGCCTCCAGC TCTTACATCGCCGACGAAATCTCCCCTCTCCTCCCCCGCCACCGCCCAGA TCTCTTTGACTCACCAGCTCCTGTAGAGTGGGGGATGTTCGCGCCACCGC GACCTTTTTGTTTCCAGGAAACGTGTACGTCTGCAATGTTTCTCGCGTCT CGGTCTGTGAGGCGCCGTGTGACTCCCGTCCCCCCGAGATCAAAAGGGAA ACGAACAAGGGTCATCTCTGTAAAACCTCCAAAACAGCAAACGCTTCGGG CGGATTCTGGGGCTGCGGGACTAGAACGGTGGAGGAAGAGGCTGCCTCCT CATTGCTTCAAGTCCAAGGGTTACGCCGCCCGGCTTTGCCGAGAACATCG CCACTTAAAGCAACAAAGTTTACTGTCGCACTGGCAGCACTGCCACCGAT CGCCCCCGCTGCAAGGCAACAACCGCGAAGACTCGAGGCTTACGCTCCCC GAGATATCCGCCGCCGACTGTCTTTTTTTTCGTTTTGTTTTCCCCGCGAA CGAACTCAAAAGCTGACTAGGTGTGGGGTCACCCTTATGTTTGGAGGGCA TGAGGCGCGCGCGGGGACTTCGCGCTTCCTGTCGCAAGCGACCTTTCTCG TGTACAAGTTAACCATGGCCCTGTTCTTCATGTCCTTGGCGATATATTGG CGGGAAGCAGCGGGTGAAAGTATCGTCTTGGCGAAACGTGGGTCCGCATA AACGGGTATGCTTTGGTTGAAGGGAGGGGCGCGGGGGAATACGCTGGAGC TCACACGATCCGAGTGCTGGCGGGAATTATGTGCGTGGACTTGCGGGTAC TGTTTTTCCGAGGTGCCTGTGAGGTGTAAAGAGTCGTTCGAGTCGTGCCA AAAGTGTCTTGTGCTCGATGTCGGCGATTATTTTTGGGCCGCATTGTTGC TGCCGCCACATTTGCAAGTGTCTTCTTTCGCAGAGTCATCTGCCGTCCGT GCCAACAGCGTTTATTGGTCGGCTGGGTCATCACGCCCGTGCTTGTGGTC GGACATACGTTCCACACGTGAACCCCCTACCCGCGAAATTTTTGTCCCGC GTGCCAGCTTCCCGCGCTCTTGTTGATGCTGCCACGTTCTGCTGTTGCTG CCGCTGCTGATGGTGCTGGTGCTGGTTCTATTTTTGAACAACATCGACAA ATCACGATGGATGACAAAACGGCGACAAACGGCGAAAAACGAACAACCGC TCAAAAGTGACCCACCAAACCTGGTACATAACGATGGCCTACTTCTTCGT CTCGACGGCCTCCGCGTACCTCATCTTGAGAGCAATCGGCAAGCGGGCCG CCACCGCAAGCTCAGGGGCTGCGCTCGAAGAGGGGGAGGGCCCCCGAGCC TCGGAAATGGCGGACGTTGGAGTCGAGGTGGCGGCGGCGGCCCCTACGTC AGGCGAGAGTGAGACCGTCAAGGGCACCGAATCGCCCGTGCCGCTCGCTC TCAGGAGGCTGCAGCTTGTGACGTGGAATATCGCGTGCAACGTCTCCTTG CTCGTCGTCGGTCTGTTCTGGTACGCCGACGTGAGTAGAAGCGACATCGG ACTATTTCGGACGTGACTTGTTCCGGAGTCCTGAAGTGCGATGAAAGTGG CTTAGACTATGCAATTTGTACGCGCGACACCTCGACCGCCAAAAGATGTC AGAAGTGGGAACCCAGAGCAGGAAAGCCAGTCAGATAATCGCTCCCCTCC CTTCCCACCTCGTCGCGGACCATGTGACCCCCTCGCTTCTCATTCTCTTC TGTTGTTTTTCTCCTTTCTCGAGGAATTCAACGCCCCTCCCCCCTCGCTT TCTTGTCTGGCCTCCTGCATCCGCGTCCAGTACGATCGTGATCGCCCCGT CACAAGTGTTGACGTCCTTGCTCATGGCGCCATCGCTCCTATTATGGTGA GATGCTAGTACCGAGTATTGAAGGCCTCAGTGGTGGAGGAATTTCCACTG CACTCGTGGCGAAGAGGGAGTTGCGTGCTTCATTGGAGGGCCTTCCGTGA AAAGTGACGATGAGTGACGCCTTGTCGGACAGAAGAGCAGGGGAACATTA TGCGCATCCTGCCTCTTTGCCCATCATTTCTGTCCTCCCGCGTTGAAGTT GCTCCGGCCGCTTCTTGGCTGTGGTGCAAGCCTCGTTGTGCCGCCTTGCC TGCGGTGATCTTCACAACAAGAACGTGGGTGTATGTTCTGCAGAGCAAGA CTGCTTGCTGATTGGGAAGCACCTGCGATGCACCGTTAAATTGTGTCGTC AGCGGTCGACAGACACGCCCTCCTCCCCCTTTTTTACGCGCCTTCGGCAT ATCTTGCTCGGGGCCCGCTTAATGTTTTGTCGAGCCTTGCCGTCTTAAAG GTGGGATCGGTTGTGATTTTGCGCTCTTGGCCTGTGCTTCTGAAACTGCT GTGGTTCGTATCACGAGACTGGTGTCAGCTTTCCCTTCCCCGTCTTAGCC TCTCTCCCACCTTCTCGCTCTTTCTCTTATTCCTCTCTTCTCGATCTGAC CCTCTCACAACCAATCGCCTCGCTTCTTCTCCCCCCGCGATGTTACCCAG CTGATCGATCAGTTCCTGGTTGCGGACCACTTTAGGCTTCGGCATATCAT CTTCTCCCAGGTGTACGGAGTGATCTACATCATCTTCAATATCATTTGGT ACTACACCGGTTGGAAGGAGAGAATGCTCTACGAGGTTCTCGACTGGGAC AACAAGCCTCTGGTGGCATGCATCTACGCGATCGTATCCATCCTGTTCCT GGCTCCACTCTTCTCGTTGATACATCTGTTTATCTGCAGGTGACGATGCA ACTGATCGCAGCATCTTCCGGATTGCAGACGACAATTCAGCGGCTATCGC TGCTTTTGCAGGCACGCGCGCAGTTGTGTATTCGCCCCCTTGAACCCATT GAAGGTCGCTGCGAGAAGCACGCTCTGGATATTTCATCCATTACACCACG GAGTCGACGATGAGGGCGGGTCACCCGTGCACGTTGTCAGCCGTAGCGTT GCTGTTCCGGAGGATATCGAGTTCACGCCCACACGCACAAAACGATTTGG AACCGCGTGTCCCATCATTTCAGCACTCAATCCAACGCATTTATGCTGTA GTTGATGCTCCAATGATCACGGACACACAGTAGTATCTGCCGGCCTCTAT TAGAGTCATCAAGATCCGCGAGAGTGCTGCTGTAGTGCCAGGTATTGATG CTTCAGGTAGAGCTGCTTAGCCTGCGACCTTGTGACACATCTTTCACTCC CCGATCGACCTCCTCCTACAACCCGGCCATCGAACCATGTAACGTACCTC TTCACGCTGACTTGATTGACTGCTGGTCGATGATCCCACCGAGATGTAGA GTGTGCGCAGCGTGTCCGTGCTGGCGGATTGGTCTCTGGATCCTCGCCAG AAAGAATGTCCGCCAACCAACCCCCTGCGTAGAACAACGGGCGTGTTTTC ACGCGGCCGCACCGTGGCACGGCAAGCGTGTGCCATGACAATTTCAAGAG CTTTTGTCGTTATCGTATCTCCCGTTAGCCATAACTTCCAGAAATCTCGG CCCGTGCTCACTTGTCAAAATTCATGACTCCAATAGGAAAAAATATGAAA GCTACACATTCACATACCCATACGTGCATTCACGACACCCCCGCCACGCG GGAAACTCTCCTGGCGCTAGGTGGAACAATACCACATGATTATGTTTTTT CTTCATTTCAAGAGTGCACCAGTTCACCTCCCTCAACTTGCTTACGCTGT CCCTTCGCCTTTCCTGCTGCCGGCGGATGGTTAAACCGAAACCTCCAGCC GCCGCGAGAGACTCCACTCACGCCTGCAAGAAAAGCTGGAGGCGTCGCGG CGCATCATCACTTTAGGATGATTCCTTCATGGCCTAAGTTGTGTTGACCC AATTTTACGTTGAGCTAAGGAGTTGCATGATGTTGCATGATGAGCTTTAC ACACCGCAGATGAGGAGGGCGGGACATTCCGTCGCAATCCATTCGAGTTG TAGCACCGTTCCTTCCCCAAATAGAGCACGTATTTGGGCGCTCTTACCGT TTGGTCCAGGCCTCACATGAGGACCTGTTTTCCTTTCTCATCTCTGTTCT GCTGGGTCTCCAGGTGGAGCAGTTTGTACTTTGCCTACTCGTTCAGACAC ACAGGCTCCGTTTCCGGCGATCATGGGGTACTACATGCCACTACAAGCGG AAAATCTGTGGATATTCGTGTTGTTGAATTGATTACTCGAGACGGGAAGA ACTTATGTAAGTCTTCTGGAGTCGCACCAGAACAGGGGGTGGACGTGAAA GACCGGACGTGAGCTTCGTGTGGATGGCGCCTGGAAAGGCGCTTGGATGC GAGATAATTTAGCATGTAATACTTGCTGCTTTTGGCGTTCATTGACGCGA AAGAGGTAGCATATTTCTCGATGAGAGCTCCTTAAGGCAGAGTCCCGCCG GAAGAGCCGGAAAATTGTGATTTTTTCTGCTTCAAGGGTTGAGCAAGACC CCAGTGGAAAAGTGCGGGAGGTTCAATGAGGTGTGTTTTTCAAACTCAAG GGGCAAAACACTTTTTTCTCCGGGGGTTGTCCACAAATGAAAGTTTTTCC CGGCCATCACAGGAGCTCTGTAAGAGTCAGGACAGGCATCCCACGAGAAG CCGAGCGAATCTCTGTAGTGTCGATTTGTTATAGGCCCGCAGGTTAAGCG TACGCATTTATTGGTTCATCAGATTTGTCATCATAAGCTAGCTTGAGCCG AGTCATGTCCGGTTTGTGTGTGCAATTGGTTCTGTAAGACACCAATTTAA TGCTTCGATTCCCACAAACCCTCAGGCATGACGTGTAGTTTCTTGTGCTT TTCCTTGTGGTCGATGAAGGGCTGTCGTTCGATGTACGCAAAGGCAAAAA GCTCCAGATTTTGCGGAGAACAATCATGCTTGAAACTCAGGAATTGGCGT ACAGTGCCGGCCCGGTCGTAAGATACACTCAATTCGAGCGAGGCTCATTT CTTATTATGTCCCCCACCACTGATCGTAGGCTTCTATGTAGGGTTTAGTG TAGCTCCGGCCGATGAACGCAATTTCTTACGGCATATTTTTTAGGAAAGC TAATAATCTGAGCCTCGGTTTCTTACTAAGATGTTTCTTATGAGCGGGCC GGCACTGTACAACTCGAGGTGTAGAAGAGGGCCTTTACTTTGCAGGATGG CCCCCTCGAGGCACAAACTGAATCCTAGACTACATCCAAACACCCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig22:863344..868989-

>mRNA_P-fluviatile_contig22.4804.1 ID=mRNA_P-fluviatile_contig22.4804.1|Name=mRNA_P-fluviatile_contig22.4804.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1602bp|location=Sequence derived from alignment at P-fluviatile_contig22:863344..868989- (Porterinema fluviatile SAG_2381)
ATGTTTGGAGGGCATGAGGCGCGCGCGGGGACTTCGCGCTTCCTGTCGCA
AGCGACCTTTCTCGTGTACAAGTTAACCATGGCCCTGTTCTTCATGTCCT
TGGCGATATATTGGCGGGAAGCAGCGGGTGAAAGTATCGTCTTGGCGAAA
CATGTTTGGAGGGCATGAGGCGCGCGCGGGGACTTCGCGCTTCCTGTCGC
AAGCGACCTTTCTCGTGTACAAGTTAACCATGGCCCTGTTCTTCATGTCC
TTGGCGATATATTGGCGGGAAGCAGCGGGTGAAAGTATCGTCTTGGCGAA
ACTGACCCACCAAACCTGGTACATAACGATGGCCTACTTCTTCGTCTCGA
CGGCCTCCGCGTACCTCATCTTGAGAGCAATCGGCAAGCGGGCCGCCACC
GCAAGCTCAGGGGCTGCGCTCGAAGAGGGGGAGGGCCCCCGAGCCTCGGA
AATGGCGGACGTTGGATGACCCACCAAACCTGGTACATAACGATGGCCTA
CTTCTTCGTCTCGACGGCCTCCGCGTACCTCATCTTGAGAGCAATCGGCA
AGCGGGCCGCCACCGCAAGCTCAGGGGCTGCGCTCGAAGAGGGGGAGGGC
CCCCGAGCCTCGGAAATGGCGGACGTTGGAGGCACCGAATCGCCCGTGCC
GCTCGCTCTCAGGAGGCTGCAGCTTGTGACGTGGAATATCGCGTGCAACG
TCTCCTTGCTCGTCGTCGGTCTGTTCTGGTACGCCGACGGCACCGAATCG
CCCGTGCCGCTCGCTCTCAGGAGGCTGCAGCTTGTGACGTGGAATATCGC
GTGCAACGTCTCCTTGCTCGTCGTCGGTCTGTTCTGGTACGCCGACTACG
ATCGTGATCGCCCCGTCACAAGTGTTGACGTCCTTGCTCATGGCGCCATC
GCTCCTATTATGTACGATCGTGATCGCCCCGTCACAAGTGTTGACGTCCT
TGCTCATGGCGCCATCGCTCCTATTATGCTGATCGATCAGTTCCTGGTTG
CGGACCACTTTAGGCTTCGGCATATCATCTTCTCCCAGGTGTACGGAGTG
ATCTACATCATCTTCAATATCATTTGGTACTACACCGGTTGGAAGGAGAG
AATGCTCTACGAGGTTCTCGACTGGGACAACAAGCCTCTGGTGGCATGCA
TCTACGCGATCGTATCCATCCTGTTCCTGGCTCCACTCTTCTCGTTGATA
CATCTGTTTATCTGCAGCTGATCGATCAGTTCCTGGTTGCGGACCACTTT
AGGCTTCGGCATATCATCTTCTCCCAGGTGTACGGAGTGATCTACATCAT
CTTCAATATCATTTGGTACTACACCGGTTGGAAGGAGAGAATGCTCTACG
AGGTTCTCGACTGGGACAACAAGCCTCTGGTGGCATGCATCTACGCGATC
GTATCCATCCTGTTCCTGGCTCCACTCTTCTCGTTGATACATCTGTTTAT
CTGCAGCCGCCGCGAGAGACTCCACTCACGCCTGCAAGAAAAGCTGGAGG
CGTCGCGGCGCATCATCACTTTAGGATGACCGCCGCGAGAGACTCCACTC
ACGCCTGCAAGAAAAGCTGGAGGCGTCGCGGCGCATCATCACTTTAGGAT
GA
back to top