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Homology
BLAST of mRNA_P-fluviatile_contig22.4777.1 vs. uniprot
Match: D7G702_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G702_ECTSI) HSP 1 Score: 294 bits (752), Expect = 5.610e-90 Identity = 214/392 (54.59%), Postives = 238/392 (60.71%), Query Frame = 3
Query: 87 MFDLIASKLEEAQAFADGLVVNLDVINMDSRLLEEQEREEKSKGESLRLLRDSGDTTDATSRESSVVGVAAAAAGTAERKANTRSGGRGALGEIEIPQLRTDVEQEYFQQRSRASSPQGAVSERS-FGDRFASLEESGGNFEDEFDPILASIRRPPQPQRQEQGSEAMSKP-----------IPPPRASGERKEDSPFPALEYVDAAARPTAGSTFAAGFLSILPGDMRAKAGAVMAQSSARISESANALRSALDPGGASATASATDRFKRRQSDPA-----GGDGALELEEGRGDNGGWGGRRAAVGAVDEGEVRLMNVNELLSEEERQQLASFSGGSGGAGRFCGWRRLRKYIPIGVGIGLLGLFYLWRWTTLLVG-DSANEMASLGSTR 1208
MFD++ASK+ EAQAFADGLV NLDVINMD RLLEEQER LRL G+IEIPQLR + E RS S P+G+ SE S FGDRFAS+E+ G NFEDEFDPILASIR+P QP + + P P R G D A RPT GS+ AAGFLS+LPGDMRAKAG VMAQSSARISESANA RSAL PGGA+ SATD+ KRRQSD GGD ELEEGRGD E +VRLMNVNE+LSEEERQQLASF+GG+G AGRFCGWRRLRKY+P+ VGIGLLGL YLWRWTTLLVG D+ANE+ LGS R
Sbjct: 1 MFDMLASKIGEAQAFADGLV-NLDVINMD-RLLEEQERXXXXXXXXLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIEIPQLRQEDNAEL---RSHPS-PRGSTSEHSSFGDRFASMEDGGVNFEDEFDPILASIRKPQQPPASTTAAASSMSPRGRXXXXXXXXXPSGRERGREAND-----------AGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQ--SATDKSKRRQSDHTCRGVDGGD--HELEEGRGD---------------EDDVRLMNVNEVLSEEERQQLASFAGGAG-AGRFCGWRRLRKYVPVFVGIGLLGLLYLWRWTTLLVGKDTANEVKVLGSER 355
BLAST of mRNA_P-fluviatile_contig22.4777.1 vs. uniprot
Match: D7G703_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G703_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 1.480e-11 Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = -1
Query: 1826 RGGDVTVGGDVNVKGGAEE--GREGIASAGAVPPDRRPDPAEGTGGPGYVCWVCRRGFRSAKGLERHEAKSELHEINVQLRDFLS 2074
R GDV GD+ GGA+ GR G +S E G G+ CWVCRRGF+SAKGL +HEAKSELH INVQLR+FLS
Sbjct: 251 REGDV---GDLKKGGGADAAAGRSGDSSVAG----------EKAAGSGFACWVCRRGFKSAKGLAQHEAKSELHAINVQLREFLS 322
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_011590.1 |
| Exons | 5 |
| Model size | 2086 |
| Cds size | 1128 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815968.5412307-UTR-P-fluviatile_contig22:610177..610238 | 1622815968.5412307-UTR-P-fluviatile_contig22:610177..610238 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig22 610178..610238 + |
| 1693563900.1439326-UTR-P-fluviatile_contig22:610177..610238 | 1693563900.1439326-UTR-P-fluviatile_contig22:610177..610238 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig22 610178..610238 + |
| 1622815968.552171-UTR-P-fluviatile_contig22:610380..610405 | 1622815968.552171-UTR-P-fluviatile_contig22:610380..610405 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig22 610381..610405 + |
| 1693563900.1528938-UTR-P-fluviatile_contig22:610380..610405 | 1693563900.1528938-UTR-P-fluviatile_contig22:610380..610405 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig22 610381..610405 + |
| 1622815968.6093898-UTR-P-fluviatile_contig22:613285..614157 | 1622815968.6093898-UTR-P-fluviatile_contig22:613285..614157 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig22 613286..614157 + |
| 1693563900.2078173-UTR-P-fluviatile_contig22:613285..614157 | 1693563900.2078173-UTR-P-fluviatile_contig22:613285..614157 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig22 613286..614157 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815968.5666244-CDS-P-fluviatile_contig22:610405..610494 | 1622815968.5666244-CDS-P-fluviatile_contig22:610405..610494 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 610406..610494 + |
| 1693563900.1628103-CDS-P-fluviatile_contig22:610405..610494 | 1693563900.1628103-CDS-P-fluviatile_contig22:610405..610494 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 610406..610494 + |
| 1622815968.5762484-CDS-P-fluviatile_contig22:611039..611883 | 1622815968.5762484-CDS-P-fluviatile_contig22:611039..611883 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 611040..611883 + |
| 1693563900.1759772-CDS-P-fluviatile_contig22:611039..611883 | 1693563900.1759772-CDS-P-fluviatile_contig22:611039..611883 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 611040..611883 + |
| 1622815968.586986-CDS-P-fluviatile_contig22:612884..612978 | 1622815968.586986-CDS-P-fluviatile_contig22:612884..612978 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 612885..612978 + |
| 1693563900.1874397-CDS-P-fluviatile_contig22:612884..612978 | 1693563900.1874397-CDS-P-fluviatile_contig22:612884..612978 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 612885..612978 + |
| 1622815968.598869-CDS-P-fluviatile_contig22:613184..613285 | 1622815968.598869-CDS-P-fluviatile_contig22:613184..613285 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 613185..613285 + |
| 1693563900.1976757-CDS-P-fluviatile_contig22:613184..613285 | 1693563900.1976757-CDS-P-fluviatile_contig22:613184..613285 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig22 613185..613285 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig22.4777.1 >prot_P-fluviatile_contig22.4777.1 ID=prot_P-fluviatile_contig22.4777.1|Name=mRNA_P-fluviatile_contig22.4777.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=376bp
MFDLIASKLEEAQAFADGLVVNLDVINMDSRLLEEQEREEKSKGESLRLL RDSGDTTDATSRESSVVGVAAAAAGTAERKANTRSGGRGALGEIEIPQLR TDVEQEYFQQRSRASSPQGAVSERSFGDRFASLEESGGNFEDEFDPILAS IRRPPQPQRQEQGSEAMSKPIPPPRASGERKEDSPFPALEYVDAAARPTA GSTFAAGFLSILPGDMRAKAGAVMAQSSARISESANALRSALDPGGASAT ASATDRFKRRQSDPAGGDGALELEEGRGDNGGWGGRRAAVGAVDEGEVRL MNVNELLSEEERQQLASFSGGSGGAGRFCGWRRLRKYIPIGVGIGLLGLF YLWRWTTLLVGDSANEMASLGSTRT* back to topmRNA from alignment at P-fluviatile_contig22:610178..614157+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig22.4777.1 ID=mRNA_P-fluviatile_contig22.4777.1|Name=mRNA_P-fluviatile_contig22.4777.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3980bp|location=Sequence derived from alignment at P-fluviatile_contig22:610178..614157+ (Porterinema fluviatile SAG_2381) GCTCTCCTTCTCTGACTCTAGCCGAAGGCAGCCAGAACAAGGAAGGTCGC
TAAACTACTTGGTGAGTTTAATTGTTGGTGTCATCCCACGCCGTCCCGCC
TTGCCTGCTGGAGAAAAACATCTCGCCTCGAAATGCGGCGTAACTATAGC
GACTATTTTCTTACACACGCCTCCTGTGTCTCTCTCGCTCTCCGGCACGG
CAGGTGCCGGTACTAGCCGGCTCTGAAAATGTTCGACTTGATAGCGTCCA
AGCTTGAAGAAGCCCAAGCTTTTGCGGATGGCTTAGTGGTGAATCTGGAC
GTGATCAACATGGATAGGTGGGTAACAGTTTCGGAAGAATCGGAAAAGCG
GGGGATGCGCAGCACTGTTGCAAGTTCTCTCCCTCTCAGCGGAAGGAACG
AGCTCCCAGCGGTGGAGATGACGACACGCTTCTCTCTTTGGTCGATGGTA
TGAAATTTCTGTGTTGAGCTTCTTTGCATTAGCCCCTTTCACCAAGTTGA
CGCACAGCTAGCGTCCGGTTTCTCATTGCCCCGCAGGTGTGATGTTTCGT
ATGTTGGTCATGCGTGTCTCGCGGTCACGTACCTTCACCCTAGTGTGTGA
CTAGACCTATGAGCTCACTTTCCTTGAATACTGTTGTTCACTGCACCACC
CCACCACCCCACCTGCTGCACACGAGCACGCCTTTGGTAGGAATCCGAAT
ATAGACCTGTCTCGATTATTTCCGAGTAACTGCAGTTTCTCCGCGTCTGT
GCGCCCTCGCCTCTGTTCTCCGTTCCCGGTCTCAATGCAGATCCTACAAA
TCACAAATCTTGATGTACATTTTACCTCTTTATCTGCAACCATTAACCAA
CCGCCCTCTTAGCAGACTCCTGGAAGAGCAGGAGAGGGAGGAGAAGTCTA
AAGGCGAATCTCTTCGGCTTCTCAGAGATTCCGGTGACACGACGGATGCC
ACCTCCCGGGAATCCTCGGTAGTTGGAGTGGCGGCCGCAGCCGCGGGGAC
GGCAGAGAGGAAAGCCAACACCCGCAGCGGCGGCCGCGGGGCCCTCGGCG
AGATAGAGATCCCGCAGCTCCGGACAGACGTGGAACAGGAATACTTCCAG
CAACGCAGTCGCGCGTCTTCACCGCAAGGTGCCGTCAGCGAGAGGAGTTT
CGGCGACAGATTCGCATCCTTGGAAGAGAGCGGGGGCAACTTCGAGGACG
AGTTCGACCCCATCCTGGCGTCCATCCGCAGGCCTCCACAGCCGCAAAGA
CAAGAGCAAGGGAGCGAGGCGATGTCGAAACCCATACCACCGCCCCGTGC
CAGCGGGGAGCGAAAAGAGGATTCTCCTTTTCCTGCCCTCGAGTACGTCG
ACGCCGCGGCCAGGCCCACCGCGGGATCCACGTTCGCGGCTGGGTTTCTG
TCCATACTTCCCGGGGACATGCGGGCGAAGGCCGGAGCGGTAATGGCCCA
GTCGTCAGCGCGTATCTCCGAGTCGGCGAACGCGCTTCGGTCGGCCTTAG
ACCCGGGAGGCGCGTCGGCGACGGCATCGGCGACGGACAGGTTCAAGAGA
AGACAATCCGACCCCGCCGGCGGCGATGGGGCGTTGGAGCTTGAAGAGGG
GAGAGGGGACAACGGGGGTTGGGGGGGGAGGCGAGCGGCGGTGGGAGCGG
TGGACGAGGGGGAGGTTCGGTTGATGAATGTCAACGAGCTCTTGAGTGAG
GAAGAGGTGAACAGGAAGGACGTATTTTCGCTCCTCGCTTTCTTTACTCA
AGTGTGCCCAGTCTTCAAATTTTGACAGAGTATTTGTCGTGAAATCCTAA
TATAGAGCGTGGATGTACGTGAGTCTTTTCTGTGTGATGAGTGCAGTCCG
TAAGGGCCTTTGGGTAGCCTCAGCCTCGTCTGAAGCCCTGAAGGCGTTTT
TGTGACTAGAGAGTAGTCTGGGATGAGAATTCAGCTCACCTAGAGAGTGT
AGAGCCACTTGACGATAATAGCGTTCAACGAGGGCGGGGAGAAAAAGGGC
GACTGAGGGACACAGGTAGGGTTCGCCGCGAGAAGCCAGAGCGGGACGAA
CGCACTTCATCGCCTCCCCAAGCAAGAAATCCGAATTCTCGTTACGTGAT
GAGAGTTTCAATTACAAGTCTATATTTCATCGCAACAGATCTTGAAAACA
CGGAGGTAAAATCAACTGGAACGTGCGTTCCGACTGACCCTGGCCGCGGG
TCGGCAAGTCATTTTTTTTGTTGTTGGTTGATGTACGTTTAAGAGCAAGG
CGTTTTTCTTCGAAAATCACCAACGCTCAGCCGCTAGCGTTGGGGTTGTT
CGCGAATGTTCTAGGTCAGTCAGCTCGGACGATCGGCCGGTCAATCGTGG
CATGGTGGTAACGACATTATACGCGATTTCGCGGCAAAGTTCGCAAGGTC
GTCAACCGACACGGCGTGAAAATTTGAAGTTCTCAAGAGTTTGTGGAAAA
AACAGGCTTTCATTGGGTGTGATACACTTAGCTGAGGCTCTGGCGATGGC
AGGTCGCCTGCTGGCTGGCTGTCACATAAGATTTTCCGCATCCTGGCAGT
CTTAATTCATATTTTCCTCTCGATTGAGAACGATTGTTTCTGCCGTGATC
ACTACGGAGGCGCTTAGCGAGCGCCGCCCCAACAACTGTAGAGCTTGCTT
TGTCTCAATCGAACCCCCGATCGCTTTTGCTGCTCTGTGCTCGCTTCGTC
TGGGCAGCGGCAACAACTCGCATCGTTTTCTGGGGGCAGCGGCGGGGCAG
GGAGGTTTTGTGGCTGGAGACGGCTCCGAAAATACATCCCCATCGGCGTA
GGTGAGCAACGCGTGTGAGATTTGTTTCTGTGGATGGAGAGTTGCATGCG
CGGCGTCTGACAAGATTGCGCCGGAAGGGATGACCGCGTTCGTTGCTCTA
CAGATAGAAGCTCCGGCGTGTATGCTCTACACTGGCCTCGCTCGTGAAGA
AGGCTTGACAGATCTCTCCTCTCCCTGCCTTAATTATCGTGCGCGGCTCC
TCCGCAGGAATCGGGCTGCTCGGCTTGTTTTACCTCTGGAGATGGACGAC
CTTGCTTGTCGGCGACAGCGCAAACGAGATGGCTTCGTTAGGGTCCACGC
GGACATGACGCGGTCGGTCTCTCTCGGTGAATGTGTTGCGAGCTCCGCGG
CCCTTCTTGGATGAGATAATCATCTCTCCTTGAACGGTAACTTTGGCATT
CATTGTCCGGATACGTGATTATTCGTTGTCTTCGTGTTTCGGAATGGGTC
AGTCGAGCATATTTCGTTGTTGCGAACACAATTTACGTTTGTATCTTGTG
TAAGGAGGACGCTGGTTCGAAGGTGGCCGGGTTTGCTCGTTGACTTGCGC
GGAGAGCATGTGAGCTAACGCCTGCAACCCCGTGTATTTATTGGGCAGGA
ACACTCACGACGTTCAGAAGCATGTAACGGTGATTTAGGGGCGTTTTTAC
CACCGAGGAGTTAGGTGCTGACACCACAAGAGTCGGTTACTAATACAAAT
TATATGGACAAGACGGGGATGTTTCCCGCCGGACACTTCAGGCGTTTCAA
GAATTACCAAAATGTCCTCGACAGCACGCCTGCGTACAACGCTGACGTGC
ACTTGCTGATGGGCAAGCGGAGCATCACTTGGCTGGCGTCCACAAGCCGC
CCCCGACGAAACGTATGCAATCGCCCCGCGACCGCACAAAGATGAAAATG
TCGGAACGTGGCTTCACTGGGACAAGAAATCTCTGAGCTGCACGTTAATC
TCGTGCAGCTCCGACTTAGCCTCATGCCTCTCCAGCCCCTTGGCCGATCT
GAAGCCACGCCTGCAAACCCAACACACGTATCCGGGGCCTCCTGTCCCTT
CTGCCGGATCCGGACGACGATCCGGCGGCACAGCCCCTGCGCTAGCAATA
CCCTCTCGGCCCTCCTCTGCCCCACCCTTGACATTCACGTCCCCGCCGAC
AGTCACGTCCCCCCCCCGTTTTGCCTTTCC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig22:610178..614157+ >mRNA_P-fluviatile_contig22.4777.1 ID=mRNA_P-fluviatile_contig22.4777.1|Name=mRNA_P-fluviatile_contig22.4777.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2256bp|location=Sequence derived from alignment at P-fluviatile_contig22:610178..614157+ (Porterinema fluviatile SAG_2381) ATGTTCGACTTGATAGCGTCCAAGCTTGAAGAAGCCCAAGCTTTTGCGGA TGGCTTAGTGGTGAATCTGGACGTGATCAACATGGATAGATGTTCGACTT GATAGCGTCCAAGCTTGAAGAAGCCCAAGCTTTTGCGGATGGCTTAGTGG TGAATCTGGACGTGATCAACATGGATAGCAGACTCCTGGAAGAGCAGGAG AGGGAGGAGAAGTCTAAAGGCGAATCTCTTCGGCTTCTCAGAGATTCCGG TGACACGACGGATGCCACCTCCCGGGAATCCTCGGTAGTTGGAGTGGCGG CCGCAGCCGCGGGGACGGCAGAGAGGAAAGCCAACACCCGCAGCGGCGGC CGCGGGGCCCTCGGCGAGATAGAGATCCCGCAGCTCCGGACAGACGTGGA ACAGGAATACTTCCAGCAACGCAGTCGCGCGTCTTCACCGCAAGGTGCCG TCAGCGAGAGGAGTTTCGGCGACAGATTCGCATCCTTGGAAGAGAGCGGG GGCAACTTCGAGGACGAGTTCGACCCCATCCTGGCGTCCATCCGCAGGCC TCCACAGCCGCAAAGACAAGAGCAAGGGAGCGAGGCGATGTCGAAACCCA TACCACCGCCCCGTGCCAGCGGGGAGCGAAAAGAGGATTCTCCTTTTCCT GCCCTCGAGTACGTCGACGCCGCGGCCAGGCCCACCGCGGGATCCACGTT CGCGGCTGGGTTTCTGTCCATACTTCCCGGGGACATGCGGGCGAAGGCCG GAGCGGTAATGGCCCAGTCGTCAGCGCGTATCTCCGAGTCGGCGAACGCG CTTCGGTCGGCCTTAGACCCGGGAGGCGCGTCGGCGACGGCATCGGCGAC GGACAGGTTCAAGAGAAGACAATCCGACCCCGCCGGCGGCGATGGGGCGT TGGAGCTTGAAGAGGGGAGAGGGGACAACGGGGGTTGGGGGGGGAGGCGA GCGGCGGTGGGAGCGGTGGACGAGGGGGAGGTTCGGTTGATGAATGTCAA CGAGCTCTTGAGTGAGGAAGAGCAGACTCCTGGAAGAGCAGGAGAGGGAG GAGAAGTCTAAAGGCGAATCTCTTCGGCTTCTCAGAGATTCCGGTGACAC GACGGATGCCACCTCCCGGGAATCCTCGGTAGTTGGAGTGGCGGCCGCAG CCGCGGGGACGGCAGAGAGGAAAGCCAACACCCGCAGCGGCGGCCGCGGG GCCCTCGGCGAGATAGAGATCCCGCAGCTCCGGACAGACGTGGAACAGGA ATACTTCCAGCAACGCAGTCGCGCGTCTTCACCGCAAGGTGCCGTCAGCG AGAGGAGTTTCGGCGACAGATTCGCATCCTTGGAAGAGAGCGGGGGCAAC TTCGAGGACGAGTTCGACCCCATCCTGGCGTCCATCCGCAGGCCTCCACA GCCGCAAAGACAAGAGCAAGGGAGCGAGGCGATGTCGAAACCCATACCAC CGCCCCGTGCCAGCGGGGAGCGAAAAGAGGATTCTCCTTTTCCTGCCCTC GAGTACGTCGACGCCGCGGCCAGGCCCACCGCGGGATCCACGTTCGCGGC TGGGTTTCTGTCCATACTTCCCGGGGACATGCGGGCGAAGGCCGGAGCGG TAATGGCCCAGTCGTCAGCGCGTATCTCCGAGTCGGCGAACGCGCTTCGG TCGGCCTTAGACCCGGGAGGCGCGTCGGCGACGGCATCGGCGACGGACAG GTTCAAGAGAAGACAATCCGACCCCGCCGGCGGCGATGGGGCGTTGGAGC TTGAAGAGGGGAGAGGGGACAACGGGGGTTGGGGGGGGAGGCGAGCGGCG GTGGGAGCGGTGGACGAGGGGGAGGTTCGGTTGATGAATGTCAACGAGCT CTTGAGTGAGGAAGAGCGGCAACAACTCGCATCGTTTTCTGGGGGCAGCG GCGGGGCAGGGAGGTTTTGTGGCTGGAGACGGCTCCGAAAATACATCCCC ATCGGCGTAGCGGCAACAACTCGCATCGTTTTCTGGGGGCAGCGGCGGGG CAGGGAGGTTTTGTGGCTGGAGACGGCTCCGAAAATACATCCCCATCGGC GTAGGAATCGGGCTGCTCGGCTTGTTTTACCTCTGGAGATGGACGACCTT GCTTGTCGGCGACAGCGCAAACGAGATGGCTTCGTTAGGGTCCACGCGGA CATGAGAATCGGGCTGCTCGGCTTGTTTTACCTCTGGAGATGGACGACCT TGCTTGTCGGCGACAGCGCAAACGAGATGGCTTCGTTAGGGTCCACGCGG ACATGA back to top
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