mRNA_P-fluviatile_contig22.4764.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4764.1
Unique NamemRNA_P-fluviatile_contig22.4764.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4764.1 vs. uniprot
Match: D7G6Y5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 9.700e-38
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 3 
Query: 1659 MVRTLFVSVVALAASANAFLAPVPGYSLAQTSRASGVMQMVTSTAKVTPTTEGGKMQTSEATYTAALKKMEAECMADLEKAFDETAKKAKAESDKIWGDLEAEFAMDTD 1985
            MVRT FVSVVAL+ASANAFLAPVPGYSLA+TSRAS  +QMVTS      T EG KM ++E TYTAALKKMEAE +A+LEKAF+ETAKKAKAESDKIWGDLEAEFA D D
Sbjct:    1 MVRTAFVSVVALSASANAFLAPVPGYSLARTSRASAPIQMVTSATPAVSTGEG-KMVSNEETYTAALKKMEAESLAELEKAFEETAKKAKAESDKIWGDLEAEFAQDVD 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Y5_ECTSI9.700e-3877.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:478495..482862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011760.1
Exons2
Model size3131
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4764.1prot_P-fluviatile_contig22.4764.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 479629..481204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815966.4898748-UTR-P-fluviatile_contig22:478494..4796281622815966.4898748-UTR-P-fluviatile_contig22:478494..479628Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 478495..479628 -
1693563898.3408692-UTR-P-fluviatile_contig22:478494..4796281693563898.3408692-UTR-P-fluviatile_contig22:478494..479628Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 478495..479628 -
1622815966.5281012-UTR-P-fluviatile_contig22:481204..4828621622815966.5281012-UTR-P-fluviatile_contig22:481204..482862Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 481205..482862 -
1693563898.3794181-UTR-P-fluviatile_contig22:481204..4828621693563898.3794181-UTR-P-fluviatile_contig22:481204..482862Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 481205..482862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815966.5035722-CDS-P-fluviatile_contig22:479628..4798611622815966.5035722-CDS-P-fluviatile_contig22:479628..479861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 479629..479861 -
1693563898.3527224-CDS-P-fluviatile_contig22:479628..4798611693563898.3527224-CDS-P-fluviatile_contig22:479628..479861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 479629..479861 -
1622815966.5178554-CDS-P-fluviatile_contig22:481098..4812041622815966.5178554-CDS-P-fluviatile_contig22:481098..481204Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 481099..481204 -
1693563898.367465-CDS-P-fluviatile_contig22:481098..4812041693563898.367465-CDS-P-fluviatile_contig22:481098..481204Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 481099..481204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4764.1

>prot_P-fluviatile_contig22.4764.1 ID=prot_P-fluviatile_contig22.4764.1|Name=mRNA_P-fluviatile_contig22.4764.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=113bp
MVRTLFVSVVALAASANAFLAPVPGYSLAQTSRASGVMQMVTSTAKVTPT
TEGGKMQTSEATYTAALKKMEAECMADLEKAFDETAKKAKAESDKIWGDL
EAEFAMDTDAQA*
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mRNA from alignment at P-fluviatile_contig22:478495..482862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4764.1 ID=mRNA_P-fluviatile_contig22.4764.1|Name=mRNA_P-fluviatile_contig22.4764.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4368bp|location=Sequence derived from alignment at P-fluviatile_contig22:478495..482862- (Porterinema fluviatile SAG_2381)
GCTGGAAGCCAAGGCAAGTTGCGATGACCTCGATCAAGCGCTATCATTGG
CGCATATCGCACGATATCGTCCGCCGAAGGAAACTCGCCGCCGTATTGTG
TCCCAAACTTTCGTTGAAAAGGTCCTTCTGGGTTCATATACATCTTTGTC
CCCGTTCCCTGAAGAAACGCCTGCTAAGTTCAGAAATGGCCCTCGCCCGA
CTGCCTAGCGCTCATCACCCTCGTCAAGCGCTCGTTACACAGCCAGCCAA
GGTATGTCGTGCCATTGGTTCCCGAAAAGAGGATCAGCGCTTACGTTTCT
TTCAACCGTTTCCATCGCAGAATATCGGTAGCACTGGTTGAAGGAGAGGT
ATTACGAAAATGTGTGACGTATCACGAGAAGTGTACCGGGTCAACCGGGT
GGAGGGCAGGAGAGATGTGGAGCTGGATGAGCTTGGGGACTTGAACCAAC
CTCAAACACAGGCATATGAAGAAGCTGTGTGTGTGGGGTTTGCTTTCAGG
GGATGTAAGAAGCGTTGTGTTGTGCGGTCGGTTGCATGAACGAACCCGGG
TCGAGCGCCGAACCACGTCGATCTGTGGACCGGCGACTGTAGCAGAGAGA
GAGGGCGAGAGATGGGGCTCGACAAAGCTGTAGCACGAATCACATCGACG
GCCCACCTAGCTGCTCGCTATCAAACTGGATTCTGTGCGTCTTGATGTGC
TTTTGGGGAGATTTGGACCAGCGCCAGAGTCAAGTAGTCGTTGGACAGCA
GTTGTGATACATTCGTAAAAAACAGTCGTCCGAAAATCGACCCTCCGCTG
CCGTGGCTGCTACAGTTCCTCTAGCCTCCAGGTGCATGTGCCAAAACACA
CTCACGTGCGGCAGGCATTTCCGTCGTCCCCCATCGGGTGGCTCGTGGTG
ATTGCCGTATGTTGTGACTGAATCCACGTGGCGCTTGGGGCGTTCGCTTT
GAGCCCTCTTCGCGGTTCAGCGTAAGAGAGGGGGCGGTATGCCTTGAGTC
GGAAACGCCAGTTTCGATGACGTCGTAGGAGTGCCCCCGCTCACACACGC
ACACTACGCTGTCGGTGTGTGAAGGCTTGGGTGCCCGTTGGTCCGGAAAC
GCCACCCCACAGCACACGAACGACATTTCGATGCTGATCATTTGCTGAAT
ACGATGAATAAATCGTGTACTTCAACCGTCAAATACGTCCTCCGCTGTTT
GCTGCCTAGCTAGTACTACGGAGTATGTCGCACCACCTCTTGCGATGCAG
ACTTGTGTTACTTGCGGGAGAGCCGTTGTTTGTGTGTTCTCAGGGCGTGT
TGATGTAGATGATCAATGTATTGTACGCATCTCTTGTTGCGGCGGAGTGC
CGTTAGTTCGGTCGTCGGTCGGTTTGTACTTTGTGTTGTACAAGTTTTGA
TAGCAAAGTCACGAAGGACATGGCAGCAGCACCCGGTTGCGTGAAACGGA
GATCACTCACACTCGTTATTTCGTGACTGTTTGACCGATCGATCTACCAT
CGCAGCCCCGGATCCCGCTTGCTCCTCGCACTCCATCGAACCGATCGATC
CATCCATTCCTTCATCTCTCCGTGCACGTTCCTCATACACCTGACACCCA
GAAACACCGCCCACTCACGCGCCCAACCAGCACAAGCACCAGCACCAGCA
CCAGCAGCATGGTTCGCACGTTGTTTGTTTCAGTGGTGGCGCTCGCGGCG
TCGGCGAACGCCTTCCTGGCGCCGGTGCCCGGGTATTCTCTCGCACAGAC
CTCGCGCGCGTCTGGTGAGCGTGTGAAAGCCTTATGTTTGATTTCGAGAG
CGTATAACTGGACAGGAAAATCTTGATGCTTTTGGTAGCCTGGTAACGCC
TCCCAAAGAATGGGCGGCGCCGGGTTTCGCGCTCTCTGGGTGTGTTCCGC
ACGACGCACTTGCTGACAGCAGTGGGTTGTGACCAGAGAAAACGACACAT
GTAGCACAGGTAATGGGTCTACCATGGAACTGCTCGTTTTGGATGTTGTT
GCGCGTTTGCTTCCAGTCGACTCGAGCGGTGATCGTGATCAACCTCGAAG
GTGACCTTACGTGGTGCCCTGTTGACGGTCGCTCGGATGTGGAGCCCAGT
CGAAATGACCCCGAATCTCACCAAGAAAGAAGCCGCCTTGATGGCCTCCA
ACTCCCGCGGTGCCGGCGTGGCTCGTGAATCGGTGTCTTCCGATCGATGT
TCTCGGCGGAAGTTGCTTCCCACAGCGTGTGATGCAGATTGCCGAAGCCT
TTGAGGCAGCTGTCCTCTGAGTGCTAGATGACTTGGGGTACTATACTCCG
AAGGCAGGCGCCGTGTTACCGTGCCTCAAAGGCACAGCTTTAACAGGGTG
TTGGCAAGTGAAGATTTGGTTGCGTTTTCTTCAATTGTGGGTGTTGTGAC
ATCACTGCTGCCGTGAGGACGACGACGTGCTGTGTGCGAGCGCTTTTGTT
TTTAGATCGAGTGTGACGTTTGTCTTATGCAGCAGCAGTGCCAATTCATT
TCGACACAAGTGCTGCTGCTGCTGCTTGTTGTTTCATTTTTCACGAAGTG
TCTATAGCGCAATAACTCGAAAAGGAAGGACCATCACTGCACCCAGTCTT
TCCACTCGAAACAGCAAACCCGCGAGGGCGTGCGGCGCATCGCACACCGG
TCGGGTGTGCCGTATCCACCTCAGGCTGTGCGATCGCAGAGGCAACGTGC
GCCTCCATTTCTTTTGCCGTCGGTATCGAACCTGTCGTCGCATTTTAGAT
GTTTCAAGAATCACAGTGGTGGCCATGTAAAGTTTTACCAGCACAGGTTT
TACCAGCAGAGCGCGGCCGAATCAGAGTGGACAACATGTGCCGCCGAACG
TGGCGCATGGGGTCTTTCTGAGGCAACCGTTACCCCACTGCCGTGCCAAT
GTTACTCTTGGCACGCACGACTCGGCCGGTGGCGTCGTGTCGCTCTCGTT
GTCTTGTCGTGATCTAGCCCTGTCTTGTGTGTGCTACCTCGGTCGGTGCA
GGCGTGATGCAGATGGTGACGAGCACCGCCAAGGTGACGCCGACAACAGA
GGGGGGCAAGATGCAGACCAGCGAGGCCACGTACACGGCGGCCTTGAAGA
AGATGGAGGCCGAGTGCATGGCGGACCTTGAGAAGGCGTTCGACGAGACG
GCTAAGAAGGCCAAGGCAGAGTCGGACAAGATATGGGGGGACCTCGAGGC
GGAGTTTGCCATGGACACGGACGCACAGGCGTGAGGAGGCCGCCAGCCCG
CCATTTTGCCCGTCTCTATTCGATCGATTGTCAGAATTCTTTCATTTTTT
TTTTTGTTTCTCCTCCCTTTAGGTCAGGAAGGTGGAATGGGTGTGTTCCC
GTCTCGTCATTGAACAGTAGAAGGGGCCGACCCCTTTTGATGTGACTCGA
TCGCTTGCCCAGGCCCAGGCCGTGCTCCCTTTAGTGTGATAGCTGCCGAC
GCTGATTTACCTGTCTTGGGACATCGTGGCAAGATGATTGTTCTCGTGAT
TCCGTCCGCGCGAGCGACGTTCGCGAAGCGGGTAAAGATTGGCGTAGAAT
CTGTGCAGATATTTTGGGTATGCCCAAAGGGGGTAGGAAAAGAGGATTGT
CTACGAGGCGCTGCCTATGCAGCTTAACTTTTTTTTGTCGCGCGGAAGCA
GGATGAAGCTGGCCTTCCCGCCCCCCGGCCCTTTCACCTTCTCCATTCCT
TCGAAACCCTCCGGAGTTTAGTAGTGAATGGAACATCGCCAACTTCTGGG
CTGTGGTTGAATTTCTGGCGTCCAATCGGGGTGTGTCAAGAGATTTTAAT
GTAGCCAGTCATCCGTGCGGCCGCCACGAATGTTTGATTTGTCTCAAAAG
CGGCGGGGATGGCGGACGGAAGCAACGCATTTGGGGAAGGGCGAGAGACC
TCGCCTCTAGTCCCTTCCATGCTTGGTCTCGTGCGTGTGGTCTTCGACGT
GGTTTTTGATGGTATCTCATTGAAAGGCGATCAAGGAAAGCCCGCGTTCC
CCCCCCCCCTCCGTTCACGATCTTTCGGTTGGTTCAAGTGATCGCTCCAT
ACAGGCAAGGAGGGAAGGTGGAACGACGAATTTTGCGGTCTTTGGTGTAC
CGAGCGAAATCTTGGGATAATGCTTTTATGTCCAGTCGTGCGTGGCTCAC
GGGATCATCGCTTAGACTCAAAAGGTAGAATACCTGCTGATGTTGGAGGG
GCGCAAACAGGCGGTTCGAGTGACGTGTTGTAGAGGTTTGTTTGGCAGTC
AGGGTCGGAGAATGTTGATCATCAGCGGCGAGGTTTAGAGTTTTTTTTCT
GTTTTTCTGCCCCGGATAACGCTCGGGTTAACCAGCTCGCTGCGCTCTCT
CTCGAACCTTTGTCCCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:478495..482862-

>mRNA_P-fluviatile_contig22.4764.1 ID=mRNA_P-fluviatile_contig22.4764.1|Name=mRNA_P-fluviatile_contig22.4764.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=678bp|location=Sequence derived from alignment at P-fluviatile_contig22:478495..482862- (Porterinema fluviatile SAG_2381)
ATGGTTCGCACGTTGTTTGTTTCAGTGGTGGCGCTCGCGGCGTCGGCGAA
CGCCTTCCTGGCGCCGGTGCCCGGGTATTCTCTCGCACAGACCTCGCGCG
CGTCTGATGGTTCGCACGTTGTTTGTTTCAGTGGTGGCGCTCGCGGCGTC
GGCGAACGCCTTCCTGGCGCCGGTGCCCGGGTATTCTCTCGCACAGACCT
CGCGCGCGTCTGGCGTGATGCAGATGGTGACGAGCACCGCCAAGGTGACG
CCGACAACAGAGGGGGGCAAGATGCAGACCAGCGAGGCCACGTACACGGC
GGCCTTGAAGAAGATGGAGGCCGAGTGCATGGCGGACCTTGAGAAGGCGT
TCGACGAGACGGCTAAGAAGGCCAAGGCAGAGTCGGACAAGATATGGGGG
GACCTCGAGGCGGAGTTTGCCATGGACACGGACGCACAGGCGTGAGCGTG
ATGCAGATGGTGACGAGCACCGCCAAGGTGACGCCGACAACAGAGGGGGG
CAAGATGCAGACCAGCGAGGCCACGTACACGGCGGCCTTGAAGAAGATGG
AGGCCGAGTGCATGGCGGACCTTGAGAAGGCGTTCGACGAGACGGCTAAG
AAGGCCAAGGCAGAGTCGGACAAGATATGGGGGGACCTCGAGGCGGAGTT
TGCCATGGACACGGACGCACAGGCGTGA
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