mRNA_P-fluviatile_contig22.4735.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4735.1
Unique NamemRNA_P-fluviatile_contig22.4735.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 397 bits (1021), Expect = 1.780e-134
Identity = 200/235 (85.11%), Postives = 212/235 (90.21%), Query Frame = 1 
Query:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQGVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAGGYDWAWQKKAKALQEKAQAAESVGMSMEDRDAKAALKLSMDNILMGLVEKYIDGEGEGGG----ARAGQKRKS 693
            MEFPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDK CNNEQCRMQ VDPREGLLNLTGLEFMLV+LP EMSFL PGQPAP  P PRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQAPTVQKLIKSRL KFTHHLNNAFVE+SKLA+L DS GGYDWAWQK+AK LQEKA+AAE VG++ EDRDAKAALKLSMDNILMGLVEKYIDG+GEG      A  G KRK+
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKA 235
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 1.800e-92
Identity = 137/151 (90.73%), Postives = 141/151 (93.38%), Query Frame = 1 
Query:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQGVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEV 453
            M+FPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDK CNNEQCRMQGVDPREGLLNLTGLEFMLV+LP EMSFL PGQPAP  P PRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQAPTVQKLIKSRL KFTHHLNNAF E 
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGEA 151
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 162 bits (409), Expect = 4.380e-43
Identity = 94/216 (43.52%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:   22 EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQGV-DPREGLLNLTGLEFMLVDLPKEMSFL-QPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAGGYDWAWQKKAKALQEKAQAAESVGMSM-EDRDAKAALKLSMDNILMGLVEKYIDGEGEG 660
            ED  Q SF D +WL+ + LGPE A+DYFALSPFYD+  NNE CRMQG+ D    +  +TG+E+++ +LP E   L +PG P    P PR L VIKKQ RKS+T  EV+ +YY+M+G IYQAP+   LI SRL K    L+ +F  +  L   N + G YDW W  +A                  + + A +A++   D IL+ LV +Y   EGEG
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPAHN-ARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 127 bits (318), Expect = 5.040e-30
Identity = 78/219 (35.62%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQ--GVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAGGYDWAWQKKAKALQEKAQAAESVGMSMEDRDAKAALKLS----MDNILMGLVEKY 639
            ME    A+D    SF D VWLQ + L P+  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P   + LP++L+VI+KQ R SRT VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  ++     + + G   +AW   +K  +E    +E + + ++ +  K   +      +D+IL+ L++K+
Sbjct:    1 MEVAAHADD-YNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYELL-------------PNAAKQLPQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.090e-28
Identity = 70/154 (45.45%), Postives = 95/154 (61.69%), Query Frame = 1 
Query:   40 SFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQGVDPREGLLNLTGLEFMLVDLPKEMSF-LQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAGGYDW 498
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ +          GLE ML D+P  + + L P    PV      LF++ KQ R S+T V  QA+YY+++ VIYQAP++Q+LI +RL+K T+HL NAF ++ K A    S G + W
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG-FTW 200
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BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 118 bits (296), Expect = 5.270e-28
Identity = 64/150 (42.67%), Postives = 91/150 (60.67%), Query Frame = 1 
Query:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQ--GVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAF 444
            ME  G  +D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P   + LP++L++I+KQ R  RT VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAF 133
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 120 bits (302), Expect = 6.570e-28
Identity = 73/211 (34.60%), Postives = 119/211 (56.40%), Query Frame = 1 
Query:   25 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQ--GVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAGGYDWAWQKKAKALQEKAQAAESVGMSMEDRDAKAALKLS----MDNILMGLVEKY 639
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P   + +P++LF+I+KQ R  RT VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  ++     + + G   +AW   +K  +E    +E + + ++ +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELL-------------PNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: A0A067CD87_SAPPC (Mediator of RNA polymerase II transcription subunit 6 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CD87_SAPPC)

HSP 1 Score: 119 bits (299), Expect = 1.170e-27
Identity = 74/200 (37.00%), Postives = 112/200 (56.00%), Query Frame = 1 
Query:   43 FIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQGVDPREGLLNLTGLEF-MLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAG-GYDWAWQKKAKALQEKAQAAESVGMSMEDRDAKAALKLSMDNILMGLVEK 636
            F D VWL  + L     L YFALSPFYDKNCNNE+ +MQ + P + L+N+ G+E+ +L +L K+              LP+ L++I+KQ R S+TSV+V AIYY ++  IYQAP    +I SRL K ++ +N AF  +S     + + G  +D++  +K + L    Q A  +    E  +        +D I++ LV+K
Sbjct:   20 FKDTVWLSTFELNFHTVLYYFALSPFYDKNCNNERLKMQRL-PLDQLVNMRGIEYELLPNLSKQ--------------LPQTLYIIRKQFRTSKTSVQVMAIYYCLDQTIYQAPNTFTMITSRLKKCSYRINKAFQALSAGVRFSPTEGYAWDFSTDEKKEPLIPSEQLALKLKRKQEKEEKTKQNSSRVDAIVLNLVKK 204
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 117 bits (294), Expect = 1.680e-27
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 1 
Query:   25 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQGVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAGGYDW 498
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   E L NL G+E+ L+             P   + LP++L++I+KQ R  RT VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  ++     + + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150
[Close]
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 117 bits (293), Expect = 1.940e-26
Identity = 70/211 (33.18%), Postives = 119/211 (56.40%), Query Frame = 1 
Query:   25 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQCRMQ--GVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIKKQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVEVSKLAELNDSAGGYDWAWQKKAKALQEKAQAAESVGMSMEDRDAKAALKLS----MDNILMGLVEKY 639
            D    SF D +WLQ + L  +  + YFALSPFYD++CNNE+ +MQ  G+D    L N+ G+E+ ++             P   + LP++LF+I+KQ R  RT VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  ++     + + G   +AW   +K  +E    +E + + ++ +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYEVL-------------PNTAKQLPQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG---YAWDFSSKDKKEPIIPSEQLQLKLKQKYEKIEKQREHSARVDSILIQLMKKH 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE1.780e-13485.11Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI1.800e-9290.73Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA4.380e-4343.52Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE5.040e-3035.62Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA2.090e-2845.45Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL5.270e-2842.67Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT6.570e-2834.60Mediator of RNA polymerase II transcription subuni... [more]
A0A067CD87_SAPPC1.170e-2737.00Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC1.680e-2739.24Mediator of RNA polymerase II transcription subuni... [more]
K3WSB9_GLOUD1.940e-2633.18Mediator of RNA polymerase II transcription subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:343716..347251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.3
Seed ortholog evalue6.3e-74
Seed eggNOG ortholog2880.D7G6X0
Preferred nameMED6
KEGG koko:K01530,ko:K15128
GOsGO:0000151,GO:0000428,GO:0001128,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016043,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0022607,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051123,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
EggNOG free text desc.RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
EggNOG OGsCOG5097@1,KOG3169@2759
EC3.6.3.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med6
Ec32 orthologEc-01_011940.1
Exons5
Model size1378
Cds size843
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4735.1prot_P-fluviatile_contig22.4735.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 344251..347251 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815963.8386576-UTR-P-fluviatile_contig22:343715..3442501622815963.8386576-UTR-P-fluviatile_contig22:343715..344250Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 343716..344250 -
1693563880.10568-UTR-P-fluviatile_contig22:343715..3442501693563880.10568-UTR-P-fluviatile_contig22:343715..344250Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 343716..344250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815963.8546045-CDS-P-fluviatile_contig22:344250..3444721622815963.8546045-CDS-P-fluviatile_contig22:344250..344472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 344251..344472 -
1693563883.0427418-CDS-P-fluviatile_contig22:344250..3444721693563883.0427418-CDS-P-fluviatile_contig22:344250..344472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 344251..344472 -
1622815963.864432-CDS-P-fluviatile_contig22:344985..3451611622815963.864432-CDS-P-fluviatile_contig22:344985..345161Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 344986..345161 -
1693563884.3539538-CDS-P-fluviatile_contig22:344985..3451611693563884.3539538-CDS-P-fluviatile_contig22:344985..345161Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 344986..345161 -
1622815963.874558-CDS-P-fluviatile_contig22:345630..3457751622815963.874558-CDS-P-fluviatile_contig22:345630..345775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 345631..345775 -
1693563884.3669813-CDS-P-fluviatile_contig22:345630..3457751693563884.3669813-CDS-P-fluviatile_contig22:345630..345775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 345631..345775 -
1622815963.8846152-CDS-P-fluviatile_contig22:346458..3465551622815963.8846152-CDS-P-fluviatile_contig22:346458..346555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 346459..346555 -
1693563884.3775148-CDS-P-fluviatile_contig22:346458..3465551693563884.3775148-CDS-P-fluviatile_contig22:346458..346555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 346459..346555 -
1622815963.894372-CDS-P-fluviatile_contig22:347048..3472511622815963.894372-CDS-P-fluviatile_contig22:347048..347251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 347049..347251 -
1693563884.3896773-CDS-P-fluviatile_contig22:347048..3472511693563884.3896773-CDS-P-fluviatile_contig22:347048..347251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 347049..347251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4735.1

>prot_P-fluviatile_contig22.4735.1 ID=prot_P-fluviatile_contig22.4735.1|Name=mRNA_P-fluviatile_contig22.4735.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=281bp
MEFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKNCNNEQC
RMQGVDPREGLLNLTGLEFMLVDLPKEMSFLQPGQPAPVEPLPRRLFVIK
KQVRKSRTSVEVQAIYYMMEGVIYQAPTVQKLIKSRLTKFTHHLNNAFVE
VSKLAELNDSAGGYDWAWQKKAKALQEKAQAAESVGMSMEDRDAKAALKL
SMDNILMGLVEKYIDGEGEGGGARAGQKRKSSTISSTAAGFSTGPSASAG
SAAGGAGSVPQAASEATTTAAAAAARKPDR*
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mRNA from alignment at P-fluviatile_contig22:343716..347251-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4735.1 ID=mRNA_P-fluviatile_contig22.4735.1|Name=mRNA_P-fluviatile_contig22.4735.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3536bp|location=Sequence derived from alignment at P-fluviatile_contig22:343716..347251- (Porterinema fluviatile SAG_2381)
ATGGAATTTCCTGGAGCAGCTGAAGACCCGGAGCAACGTTCGTTCATTGA
TCCGGTGTGGCTGCAACAGTGGGGTCTCGGTCCGGAGAACGCGTTGGACT
ACTTCGCGCTCAGCCCCTTCTACGACAAGAATTGCAACAACGAGCAGTGT
CGGATGCAGGGCGTGGATCCGAGAGAAGGCCTGTTGAACCTCACCGGTCT
CGAGTGAGTGAAACACCTCCCTTGCTTCTCTGTTTTTCCTTGCTGTTGCT
GTCCGAGTGTTAGGCGGCTGATCTTGCAAGAAGATCATGAGCTGTGGTGC
CCCTGCTACCTGCCGACGGGTTTTCGCGACGACGAACCCCTGTTTAAAAG
GATCGCGATCGATCGACAAATGATGGACGAGGGCTGAACCGTGGTCGGCG
CTAGTCAGGTTAGATTAAAACAAGTACTGCATGATATCTCCTGCACTTTT
GGTGCGATGGCGAACAGGATCCTGTGCTTGAGGTAGGCCGCAGGTGTGGC
AGCACGATCGACCCCAACACGTGCCCTAGAATGCCCCGCAACAAGGGCGT
CTTCTCTCATCATCCTGGGGGCTGTAGCAAGCGTTTTCGATCTGCACTTG
GCCTGACTTTTCTCTTTGCTCCATTGCTAATTCTTTGCACGCGTTCATTC
CATGGCGTGCCCCCACGTCTGTCTGCTGCTGGGCGACGCGCAACAGGTTC
ATGCTGGTGGACCTTCCGAAAGAGATGTCATTCTTGCAACCTGGACAGCC
AGCGCCCGTCGAACCTCTGCCTCGCCGCCTCTTCGTCATCAAGGTGACAA
TCCTTGCTCGAGTGCGGCATACCGTAGCTGCCTTCGCATATTTTTCGGCT
GCCGGGTTTCAGCCGCCCCCGGATGGATGTGATGATCGCATTATGAATGT
CGATATCGACACTCATTCCCCACCCTTGGGCAGATTGGAACCCGCAGATA
CTTTCGGTTTTCGCCCCCTACTTACCGCAGGTACGCAGTGGTAACTTGAA
TACTTCAACGGCATTCGAATACTTGAGTAGCCGCACATCAACTTTTGCGC
GAGCAGCGGAGCAATGGAGACAACGGAGAGTGGAAACACGATGATAGCAG
ACGATGCCTGCTGCAGCCGTGCAAGTGATCGTGGTGTGCCACCCCAACAG
CAGCCAACCACATACCTCCGGCGCGGCGCTTCTTTCACAGCAACAGCCCA
ACACGAGCGGTTCAGCACTGCCCGTAGATGGTGCTATTGGATAAATCTCC
GCTGCTGAGACACGTGCGCAGTTTGAAAACCTGGCCGCGAAGTATTGCAC
GGCAAAAGTATTTCCCAATGTCCCCCGGCGGGATTTCGGCTTGTTGTAAC
TACCGTGACGGCGCTACCATACCGTCAAGTTCGCCGCTCGGTGTTATTGT
TCCTGTTTCCACATTGAAAATCCGCTGTTTTCCGTGTTGGACTTGAATGT
TGGAAATGGGCTGCTGCCTTCACCAGAAACAAGTGCGCAAGAGCCGGACA
TCTGTGGAGGTCCAGGCAATTTACTACATGATGGAGGGAGTCATCTACCA
AGCCCCAACAGTGCAGAAGCTCATCAAGTCTCGCCTTACGAAGTTCACGC
ACCACCTCAACAATGCGTTTGGTGAGAGCGCCGGTGCGGTCTCGATGTTT
GCAAATTCAAGGCGCTGCTGTGGTGATCATGCTTTCGATGTCTTAGCGTG
GAAATTACGGCTCCGCCCTCGCCGGACGTTGGCGGTGGCCAACCCTTACA
CGGGTGTTTCCTCATGGGTCGTAATTTCCAAGAGAGAATCCGCAATAATT
TTTTTGCGCGTTACTCGTCAGATGGGTCCAGGACTGTAACGCTGAAACCT
GGCGTTAGTAGACTAGACTGGCTGGCGTGGGGAAGTTCCATCTAGCCCGT
GGCCTAATTTCCTCGTGGCTGTGCGCGCACCCGGCTCAAAGTAACGTCAA
AACATAGCAATCACTGCATGACACGTTGCTTTTAATGAAATTTGCGTTGC
CAAGGGGAGGTCCTTCGCTCTTCCCGTGACTATGAACTATTTCGAAGATT
TATTTGTGCTGACACCCGGGCTGCCTTGAAACTCCCCAAGTGGAAGTATC
CAAATTGGCGGAGCTAAATGACTCTGCCGGCGGCTATGACTGGGCGTGGC
AGAAGAAAGCGAAAGCACTGCAGGAGAAGGCGCAGGCAGCGGAAAGCGTC
GGGATGTCAATGGAGGACAGAGACGCCAAAGCGGCCCTGAAACTGTCCAT
GGACAACATTCTGATGGTGAGCTGAACGTTAAAGTCATCCTACCCCGCTG
CACATGGCATTCACTATCTTTTTGTCCGTCTCTCGGATTGGCACTTCGGA
TGTCGTGAGCGGGGCGTTCGCTCTCGGCTTGGCGGCATGTCTCGTGGTCT
GGTGAGAAGTGCCGCTTCGTTTTGTGCGCTGTCGCTGTGTCAACATTTGC
TGGCGGCGGCAGCGGCATGTCTGCGACTTGTGTCTACAACATCCTCACCT
TTAATGAGCCCATGCCGCCCAAGCCAAAAGGTAGAACTGACTCCTCATCC
ATTGCTGTTCTGGTGGTTTTGCAAAGGGGGACTTCGAGCCGGGTTGCGTG
GCTAAATTGCGGAAGCGTGCTGGGTTGCCTGGCTTTATTGCGGAAGCGTG
CTCGGTTGCGCTTAAAGGGGCACGAATGCACACTATACGCAGCATACAAG
AACTCCCGTCTTGATACGTTTTTTTGCCAAATGTTGATCTCCAGGCCCAT
TCCCATTCATCCGTGTGACACTGTACTAGGGCTTGGTTGAGAAGTACATC
GACGGCGAAGGAGAGGGAGGAGGCGCGCGGGCTGGACAAAAGAGGAAGTC
AAGCACCATTAGCTCCACTGCCGCAGGATTCAGTACGGGCCCTTCTGCCA
GTGCTGGTAGTGCTGCAGGTGGTGCTGGTAGCGTCCCACAGGCAGCGAGT
GAAGCAACGACAACGGCGGCGGCCGCCGCGGCAAGGAAGCCCGACCGATG
ACATGCGTATTGAATTGACACCCGCCTTCAATCAGCATAATACCATGCTG
ATGAAGAGGCTCCTGCGGTATCCTCGTTCGTGCCATCGTGCATCTACCTA
ATTGTTCGTGCGATCGAGCATCTGTCCCTACTCGTCCGTGCGATCGTGTA
CCTGTCCCTTATTGTTTTTACAGTGTCATGATTTGATGTTCTTTTTTGTT
TTGCTCTTGAGGTTTAGAACGGGTTAGTCGCGCTTATTCCTTGTTTCCTG
TACAATGGGTGCGTAGTCTGAACTAAACTTTACAGCTGTTCGTCTTGACC
GTCTTGGTGATATGGTGTTTCTTGGGATTGCTTTGTCCAATCCCGTTGGA
CTTTTCGGGCAGATTACCTCGTCGTGCTTTCGCCAAACAACTTGATGCTT
TGGTGTGGTGATACGGTGAAGGGGTGCCGCGAGGTGGTGAAGCAGTTGCA
CCCATTACCCCGTTCGCCTCCTTGAGAAGCGTTTCGGTTGTTGAGTTTTC
GTTTGCAAATGGGAGGAGAGGGCCGCCGCAGCAGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:343716..347251-

>mRNA_P-fluviatile_contig22.4735.1 ID=mRNA_P-fluviatile_contig22.4735.1|Name=mRNA_P-fluviatile_contig22.4735.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1686bp|location=Sequence derived from alignment at P-fluviatile_contig22:343716..347251- (Porterinema fluviatile SAG_2381)
ATGGAATTTCCTGGAGCAGCTGAAGACCCGGAGCAACGTTCGTTCATTGA
TCCGGTGTGGCTGCAACAGTGGGGTCTCGGTCCGGAGAACGCGTTGGACT
ACTTCGCGCTCAGCCCCTTCTACGACAAGAATTGCAACAACGAGCAGTGT
CGGATGCAGGGCGTGGATCCGAGAGAAGGCCTGTTGAACCTCACCGGTCT
CGAATGGAATTTCCTGGAGCAGCTGAAGACCCGGAGCAACGTTCGTTCAT
TGATCCGGTGTGGCTGCAACAGTGGGGTCTCGGTCCGGAGAACGCGTTGG
ACTACTTCGCGCTCAGCCCCTTCTACGACAAGAATTGCAACAACGAGCAG
TGTCGGATGCAGGGCGTGGATCCGAGAGAAGGCCTGTTGAACCTCACCGG
TCTCGAGTTCATGCTGGTGGACCTTCCGAAAGAGATGTCATTCTTGCAAC
CTGGACAGCCAGCGCCCGTCGAACCTCTGCCTCGCCGCCTCTTCGTCATC
AAGGTTCATGCTGGTGGACCTTCCGAAAGAGATGTCATTCTTGCAACCTG
GACAGCCAGCGCCCGTCGAACCTCTGCCTCGCCGCCTCTTCGTCATCAAG
AAACAAGTGCGCAAGAGCCGGACATCTGTGGAGGTCCAGGCAATTTACTA
CATGATGGAGGGAGTCATCTACCAAGCCCCAACAGTGCAGAAGCTCATCA
AGTCTCGCCTTACGAAGTTCACGCACCACCTCAACAATGCGTTTGAAACA
AGTGCGCAAGAGCCGGACATCTGTGGAGGTCCAGGCAATTTACTACATGA
TGGAGGGAGTCATCTACCAAGCCCCAACAGTGCAGAAGCTCATCAAGTCT
CGCCTTACGAAGTTCACGCACCACCTCAACAATGCGTTTGTGGAAGTATC
CAAATTGGCGGAGCTAAATGACTCTGCCGGCGGCTATGACTGGGCGTGGC
AGAAGAAAGCGAAAGCACTGCAGGAGAAGGCGCAGGCAGCGGAAAGCGTC
GGGATGTCAATGGAGGACAGAGACGCCAAAGCGGCCCTGAAACTGTCCAT
GGACAACATTCTGATGTGGAAGTATCCAAATTGGCGGAGCTAAATGACTC
TGCCGGCGGCTATGACTGGGCGTGGCAGAAGAAAGCGAAAGCACTGCAGG
AGAAGGCGCAGGCAGCGGAAAGCGTCGGGATGTCAATGGAGGACAGAGAC
GCCAAAGCGGCCCTGAAACTGTCCATGGACAACATTCTGATGGGCTTGGT
TGAGAAGTACATCGACGGCGAAGGAGAGGGAGGAGGCGCGCGGGCTGGAC
AAAAGAGGAAGTCAAGCACCATTAGCTCCACTGCCGCAGGATTCAGTACG
GGCCCTTCTGCCAGTGCTGGTAGTGCTGCAGGTGGTGCTGGTAGCGTCCC
ACAGGCAGCGAGTGAAGCAACGACAACGGCGGCGGCCGCCGCGGCAAGGA
AGCCCGACCGATGAGGCTTGGTTGAGAAGTACATCGACGGCGAAGGAGAG
GGAGGAGGCGCGCGGGCTGGACAAAAGAGGAAGTCAAGCACCATTAGCTC
CACTGCCGCAGGATTCAGTACGGGCCCTTCTGCCAGTGCTGGTAGTGCTG
CAGGTGGTGCTGGTAGCGTCCCACAGGCAGCGAGTGAAGCAACGACAACG
GCGGCGGCCGCCGCGGCAAGGAAGCCCGACCGATGA
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