mRNA_P-fluviatile_contig22.4729.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4729.1
Unique NamemRNA_P-fluviatile_contig22.4729.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Match: D7G6W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W5_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.660e-19
Identity = 68/139 (48.92%), Postives = 80/139 (57.55%), Query Frame = 1 
Query:    1 RVLVEATAVAELRARLYLLFGGEFDTSLPRRDALAGGHSKRSGTARGRMQGRKGEIPVPNRQRVEVRPDYGPRRPRRRLAASLAGLNSARVAQDDVV*KPPGSGPVPFHQDSASISKKVVP--NESVAMWIAADDCDPE 411
            RVL + T VA LR RL LLF GEFDT +   +        R    R  +   K +  V +   V +           RLAASLAG +SAR+AQDDVV KPPGSGPV +HQDSA IS++  P  N SV MWIA DDCD E
Sbjct:   40 RVLDDVT-VARLRVRLPLLFRGEFDTGVYPDEMHWREGISRDDAPREIVNAWKADRTVAS---VVLSEHLA------RLAASLAGWDSARIAQDDVVWKPPGSGPVGYHQDSAYISRQFTPRANNSVTMWIALDDCDRE 168
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BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Match: A0A7S1IUX8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IUX8_9EUGL)

HSP 1 Score: 62.0 bits (149), Expect = 6.680e-8
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  232 RLAASLAGLNSA-RVAQDDVV*KPPGSGPVPFHQDSASISKKVVP--NESVAMWIAADDCDPEVG 417
            R+AA L G     R+AQDDV+ KPP +  + FHQDSA IS +  P  + SV +WIA DD DPE G
Sbjct:   87 RMAAQLMGWEQGTRIAQDDVLWKPPKAKGIGFHQDSAYISTQFQPYLDNSVTIWIALDDADPETG 151
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BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Match: A0A7S4GPA4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GPA4_9EUGL)

HSP 1 Score: 62.8 bits (151), Expect = 1.510e-7
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  235 LAASLAGLNS-ARVAQDDVV*KPPGSGPVPFHQDSASISKKVVP--NESVAMWIAADDCDPEVGERAHEYA 438
            LA+ L G    AR+AQDDV+ KPPG+  + +HQDSA IS + +P  N SV +WIA D+  PE G  A EYA
Sbjct:  217 LASQLMGWEQGARIAQDDVLWKPPGARGIGYHQDSAYISTQFLPYENNSVTVWIALDEATPENG--AVEYA 285
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BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Match: A0A2R5GIF2_9STRA (Phytanoyl-CoA dioxygenase domain-containing protein 1-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIF2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.910e-7
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  232 RLAASLAGL-NSARVAQDDVV*KPPGSGPVPFHQDSASISKKVVP--NESVAMWIAADDCDPEVG 417
            +LA  L G  + AR+AQDDV+ KPP +G V FHQDSA IS +  P  N SV +WIA DD D + G
Sbjct:  120 KLATELMGWPHGARLAQDDVLWKPPLAGGVAFHQDSAYISAQFKPYENNSVTIWIALDDADQDTG 184
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BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Match: A0A7S2XS15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS15_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.530e-7
Identity = 35/74 (47.30%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  232 RLAASLAGLNSARVAQDDVV*KPPGSGP----------VPFHQDSASISKKVVP--NESVAMWIAADDCDPEVG 417
            +  AS+ G +S RVAQDD+V KPP S            V FHQDSA IS + VP  N SV +W+A D  D E G
Sbjct:   47 KFVASVMGWSSVRVAQDDLVWKPPSSDDDAEPKQRIDTVGFHQDSAYISAQFVPYDNNSVTVWMALDPADEETG 120
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BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Match: F0Y5P1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5P1_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.350e-6
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  232 RLAASLAGLNSARVAQDDVV*KPPGSGPVPFHQDSASISKKVVPNE--SVAMWIAADDCDPEVG 417
            R  A L G   AR+AQDDV+ KPPG+  V  H+D+  IS   VP E  SV +WIA DD D   G
Sbjct:  141 RRCAELMGWGGARLAQDDVLWKPPGAEGVAHHRDAPYISANFVPEERNSVTVWIALDDADEATG 204
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BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Match: A0A8J2SFD5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFD5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.250e-5
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:  238 AASLAGLNSARVAQDDVV*KPPGSGPVPFHQDSASISKKVVPNE--SVAMWIAADDCDPEVG 417
            AA L G   AR+AQDDV+ KPPG+  V +H D   IS   +P +  SV +WIA DD D   G
Sbjct:  111 AAELMGWRGARLAQDDVLWKPPGAQGVSYHTDGKYISDNFMPRDDNSVTVWIALDDADEASG 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G6W5_ECTSI6.660e-1948.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1IUX8_9EUGL6.680e-852.31Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4GPA4_9EUGL1.510e-752.11Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2R5GIF2_9STRA1.910e-753.85Phytanoyl-CoA dioxygenase domain-containing protei... [more]
A0A7S2XS15_9STRA8.530e-747.30Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
F0Y5P1_AURAN2.350e-650.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SFD5_9STRA1.250e-548.39Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:311496..313756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog2880.D7G6W5
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs2BUAT@1,2S22Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size836
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4729.1prot_P-fluviatile_contig22.4729.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 313219..313756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815963.1894069-UTR-P-fluviatile_contig22:311495..3116701622815963.1894069-UTR-P-fluviatile_contig22:311495..311670Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 311496..311670 +
1693563869.965761-UTR-P-fluviatile_contig22:311495..3116701693563869.965761-UTR-P-fluviatile_contig22:311495..311670Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 311496..311670 +
1622815963.20006-UTR-P-fluviatile_contig22:312090..3122781622815963.20006-UTR-P-fluviatile_contig22:312090..312278Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 312091..312278 +
1693563869.9770355-UTR-P-fluviatile_contig22:312090..3122781693563869.9770355-UTR-P-fluviatile_contig22:312090..312278Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 312091..312278 +
1622815963.2134538-UTR-P-fluviatile_contig22:312781..3128501622815963.2134538-UTR-P-fluviatile_contig22:312781..312850Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 312782..312850 +
1693563869.9851103-UTR-P-fluviatile_contig22:312781..3128501693563869.9851103-UTR-P-fluviatile_contig22:312781..312850Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 312782..312850 +
1622815963.223038-UTR-P-fluviatile_contig22:313060..3132181622815963.223038-UTR-P-fluviatile_contig22:313060..313218Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 313061..313218 +
1693563878.0336254-UTR-P-fluviatile_contig22:313060..3132181693563878.0336254-UTR-P-fluviatile_contig22:313060..313218Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 313061..313218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815963.234237-CDS-P-fluviatile_contig22:313218..3133771622815963.234237-CDS-P-fluviatile_contig22:313218..313377Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 313219..313377 +
1693563878.9522846-CDS-P-fluviatile_contig22:313218..3133771693563878.9522846-CDS-P-fluviatile_contig22:313218..313377Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 313219..313377 +
1622815963.24497-CDS-P-fluviatile_contig22:313669..3137561622815963.24497-CDS-P-fluviatile_contig22:313669..313756Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 313670..313756 +
1693563878.9633596-CDS-P-fluviatile_contig22:313669..3137561693563878.9633596-CDS-P-fluviatile_contig22:313669..313756Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 313670..313756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4729.1

>prot_P-fluviatile_contig22.4729.1 ID=prot_P-fluviatile_contig22.4729.1|Name=mRNA_P-fluviatile_contig22.4729.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=82bp
MPSLCRLKGAWCTLWTAGMEAHPTSLLSGCHGRAIAVHFPTGAARFVDGH
SLQGTGGPSYLYSRCKRLDSNALPEEAFPFTY
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mRNA from alignment at P-fluviatile_contig22:311496..313756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4729.1 ID=mRNA_P-fluviatile_contig22.4729.1|Name=mRNA_P-fluviatile_contig22.4729.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2261bp|location=Sequence derived from alignment at P-fluviatile_contig22:311496..313756+ (Porterinema fluviatile SAG_2381)
CGTGTGCTCGTTGAAGCAACAGCAGTTGCAGAGCTTCGGGCAAGACTGTA
TCTGCTTTTCGGGGGCGAGTTCGACACAAGTTTACCCAGACGAGATGCAC
TGGCAGGAGGACATTCGAAGAGAAGCGGAACCGCGCGAGGAAGGATGCAA
GGACGCAAGGGGGAGATTCCTGTTCGTGAAATTTTGAATTTCGGGCTTGC
AGAGAGGCACGAGAAACATCATCGCACCGGCGTCAGGTGGCTCATGCAGT
GTATTGTCGTTTTTCTTAAAGTGATGATATCGCTTGTCAAGCAGACAAGA
GGGAAAGAAATATCACCTTTGGATGTGACATATCCTCACAAGCTACACAT
TTGGAATCCCTCCTGCAATCAGCCGTTCCTTGGCAAAATGCAATTGCACA
CCTTGACCATCGACATGATAGCTGTCCCACTGCTGGATCTTAAGGCCCAT
CACCCCCCCTGCCCATGCCAAGAGTTCCGCCTCCTCGAAATAAACGCGGT
AGTTCTTCTGAACGACTAAATACGCAACGGTTGTATTTTGTTTGGCCTAC
AATCGCACAGTTGATCAAATCGGTACGGCGCGTTTGCGCTGCGAGCAAAT
CGTCAACGCGTGGAAGTCAGACCGGACTATGGCCCCCGTCGTCCTCGGCG
GAGGCTTGCTGCTTCGCTTGCAGGATTGAATTCGGCTCGGGTGGCACAGG
ACGACGTCGTTTAGAAGCCCCCAGGCTCTGGGCCTGTTCCGTTCCATCAA
GATTCCGCTTCCATCAGCAAGAAAGTCGTCCCGGTGAGCGGGTTTGCATC
GAGCATGGATTGTTTTGTGCCTCGTGAACACAAACGATTGCTCGACCTAC
GATGGACCGTATATCAAGGTCGAAGCCGATGTGGGGGTTCCCAGATCACG
GGGACCGCTCATGCATAGCGGCTTCTGAGATGAAATGAAAGGAGACAAAG
TGTGTGTGGACTCGCGAAGAAGACCAACGGGTCTGCAAGCCCCAAAATTC
ATGGATTTCCTAATTCGACACAGAGATGATTCCCATGGCCTCAGAAAGTC
AAGTCAATGAACAAAAACCTTACAGCAAGCCAGCACTGGGAACGAGATAT
CCGAAGTTCCATTACACCGCTGTTACCCCGCATTTGACGCTCCATGGTGT
GTCGTGCAGCCCATTCTGGATTGTCTGACAAGAAGCACGGAATTTTCATC
GCTTGCATTAGCGCACCGTTGCCGGCCGCGACCCTTCTGCCCCGCTCGGC
CCAAGCGTTGTTTCGTGCTGTTCGGCACATGGAGAGAACGAATCGGTGGC
GATGTGGATCGCCGCAGATGATTGCGACCCGGAGGTGGGTGAGCGCGCGC
ACGAGGTCCGAGCGGTTTGCGTTGCCGGCCTCTACGTCGCCGCTAAATCG
CGATATTGGACTCGCACGTGTTGTGACACGCGAACGCGCGACTCGCCGCA
AAGATTGATTCGGCTGCGTGCAGGTGGGCATTACTCACGCAGGTTGCCAC
CAAAAGCAACAGAACCGTCGTCGCACTGCGACACAATGTCCTCACCGCCG
CCCGGGACGATCGAGTACGCCACCATGACCGAACCGCTGTCAGCCGGAAT
AGGCGATTTCGAACAAATTGTCAAGCCCCCTTCCCCACCCCTCCCTCCAC
GTAGCCAGCGCCCACAACCAGCGCGCTCTGGCAGAGGTGGCAGCTCTGAG
ACTCAGGCGCTAGGTTGAGTTCGATGCCGTCGCTGTGCCGCCTGAAGGGT
GCGTGGTGCACTTTGTGGACTGCTGGTATGGAAGCGCACCCAACGTCTCT
TTTATCCGGCTGCCACGGTCGAGCCATCGCGGTGCACTTCCCCACGGGGG
CAGCGAGATTCGTCGACGGGCACTCACTTCAGGTGCAGTCGCGATGATGC
GCTTGTCACTTGGGTAGTGTGTTTGCTACACTGGACATTCGGAACTCGAT
TTCATGTGCACCAGTGACACATCTACTTGTCCAACCATGAAGACCATAGA
GTGGAAGCACCGCGGAAACCCACGCCCTCGCACGTACCCCAAAACGTCGT
CGTATCGAACACCCCCTGGTTCGTCTATGCATTCATCGACTATATTAATG
CAATATCTGCCTTTTCCTTCTTTCCTCACCGTGACAAATGGCATGGAACT
TCCTCCACCCACCCTGTGCTTAAGGGGACCGGCGGCCCGTCCTACTTGTA
CAGCAGATGTAAGCGGCTGGACAGCAACGCGCTACCGGAAGAGGCTTTCC
CGTTCACATAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:311496..313756+

>mRNA_P-fluviatile_contig22.4729.1 ID=mRNA_P-fluviatile_contig22.4729.1|Name=mRNA_P-fluviatile_contig22.4729.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=492bp|location=Sequence derived from alignment at P-fluviatile_contig22:311496..313756+ (Porterinema fluviatile SAG_2381)
ATGCCGTCGCTGTGCCGCCTGAAGGGTGCGTGGTGCACTTTGTGGACTGC
TGGTATGGAAGCGCACCCAACGTCTCTTTTATCCGGCTGCCACGGTCGAG
CCATCGCGGTGCACTTCCCCACGGGGGCAGCGAGATTCGTCGACGGGCAC
TCACTTCAGATGCCGTCGCTGTGCCGCCTGAAGGGTGCGTGGTGCACTTT
GTGGACTGCTGGTATGGAAGCGCACCCAACGTCTCTTTTATCCGGCTGCC
ACGGTCGAGCCATCGCGGTGCACTTCCCCACGGGGGCAGCGAGATTCGTC
GACGGGCACTCACTTCAGGGGACCGGCGGCCCGTCCTACTTGTACAGCAG
ATGTAAGCGGCTGGACAGCAACGCGCTACCGGAAGAGGCTTTCCCGTTCA
CATACGGGACCGGCGGCCCGTCCTACTTGTACAGCAGATGTAAGCGGCTG
GACAGCAACGCGCTACCGGAAGAGGCTTTCCCGTTCACATAC
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